RARA - ECOLI - GREMLIN Contacts

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RARA - Replication-associated recombination protein A

UniProt:	P0AAZ4	Sequences: MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12690
Length:	447 (381)
Sequences:	8517 (5773)
Seq/√Len:	295.7

ECOLI - RARA DPO3X
BACSU - YRVN DPO3X
HALSA - RFCL
SULSO - RFCL

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
32_Q	169_D	5.161	1.00
175_T	194_D	3.431	1.00
404_V	408_P	3.401	1.00
171_E	198_R	3.362	1.00
42_P	46_E	3.224	1.00
166_S	169_D	3.220	1.00
175_T	197_R	3.184	1.00
32_Q	172_Q	3.156	1.00
266_V	298_I	3.121	1.00
176_Q	180_D	2.964	1.00
171_E	175_T	2.888	1.00
28_Y	66_L	2.805	1.00
233_K	236_L	2.705	1.00
319_D	323_R	2.691	1.00
234_P	238_T	2.655	1.00
28_Y	69_V	2.631	1.00
315_I	319_D	2.485	1.00
170_I	211_A	2.428	1.00
173_V	208_A	2.375	1.00
175_T	179_E	2.372	1.00
165_L	208_A	2.367	1.00
283_T	361_R	2.251	1.00
87_G	90_E	2.185	1.00
171_E	197_R	2.180	1.00
193_P	233_K	2.161	1.00
358_A	362_E	2.156	1.00
299_A	302_D	2.156	1.00
24_N	27_Q	2.132	1.00
359_D	363_R	2.122	1.00
193_P	231_V	2.116	1.00
254_R	257_D	2.099	1.00
28_Y	35_L	2.034	1.00
174_L	211_A	2.008	1.00
88_V	121_S	1.947	1.00
199_A	234_P	1.929	1.00
309_R	312_Q	1.921	1.00
352_A	356_A	1.896	1.00
68_E	80_R	1.882	1.00
201_A	211_A	1.875	1.00
89_K	93_E	1.869	1.00
251_K	254_R	1.865	1.00
77_D	106_R	1.826	1.00
26_A	42_P	1.823	1.00
190_I	219_A	1.821	1.00
317_A	336_A	1.818	1.00
299_A	306_A	1.804	1.00
235_E	239_E	1.797	1.00
302_D	306_A	1.783	1.00
93_E	97_R	1.764	1.00
204_V	211_A	1.757	1.00
390_R	395_E	1.704	1.00
173_V	176_Q	1.698	1.00
279_A	282_I	1.686	1.00
174_L	197_R	1.681	1.00
192_L	197_R	1.673	1.00
34_L	160_Y	1.656	1.00
319_D	322_T	1.650	1.00
14_Q	18_A	1.638	1.00
195_E	234_P	1.636	1.00
312_Q	316_A	1.629	1.00
266_V	269_S	1.597	1.00
353_F	357_L	1.569	1.00
356_A	360_A	1.569	1.00
318_W	323_R	1.567	1.00
317_A	321_F	1.563	1.00
377_T	380_M	1.555	1.00
376_P	380_M	1.547	1.00
247_R	251_K	1.544	1.00
276_Y	280_R	1.544	1.00
350_Y	354_K	1.541	1.00
315_I	318_W	1.530	1.00
167_T	201_A	1.520	1.00
193_P	196_T	1.514	1.00
307_D	343_A	1.510	1.00
318_W	322_T	1.503	1.00
115_V	137_F	1.502	1.00
330_E	334_A	1.498	1.00
167_T	198_R	1.493	1.00
376_P	379_L	1.491	1.00
170_I	208_A	1.489	1.00
260_S	263_H	1.481	1.00
55_L	162_L	1.478	1.00
318_W	325_G	1.476	1.00
167_T	202_E	1.461	1.00
171_E	201_A	1.456	1.00
261_A	265_S	1.451	1.00
260_S	264_K	1.449	1.00
301_E	304_G	1.445	1.00
317_A	325_G	1.438	1.00
27_Q	176_Q	1.435	1.00
315_I	320_C	1.429	1.00
178_M	192_L	1.419	1.00
54_I	157_A	1.412	1.00
309_R	313_V	1.401	1.00
395_E	400_A	1.400	1.00
170_I	201_A	1.390	1.00
265_S	269_S	1.387	1.00
235_E	238_T	1.382	1.00
349_V	356_A	1.377	1.00
91_I	95_I	1.375	1.00
354_K	357_L	1.368	1.00
77_D	101_N	1.360	1.00
23_E	27_Q	1.359	1.00
107_R	136_T	1.357	1.00
318_W	324_V	1.351	1.00
253_D	257_D	1.346	1.00
266_V	340_L	1.344	1.00
263_H	269_S	1.336	1.00
349_V	352_A	1.333	1.00
285_G	288_P	1.321	1.00
352_A	357_L	1.318	1.00
100_Q	103_N	1.316	1.00
363_R	366_Y	1.311	1.00
252_G	255_F	1.304	1.00
93_E	96_E	1.302	1.00
287_D	290_Y	1.302	1.00
347_N	351_T	1.299	1.00
300_S	335_Q	1.297	1.00
374_N	377_T	1.293	1.00
354_K	358_A	1.291	1.00
66_L	162_L	1.288	1.00
96_E	99_R	1.287	1.00
301_E	306_A	1.279	1.00
273_A	277_W	1.272	1.00
321_F	325_G	1.267	1.00
247_R	250_N	1.254	1.00
74_A	136_T	1.245	1.00
312_Q	315_I	1.244	1.00
295_C	337_I	1.242	1.00
177_A	212_L	1.237	1.00
56_W	161_L	1.235	1.00
299_A	303_V	1.234	1.00
314_A	320_C	1.233	1.00
315_I	323_R	1.230	1.00
234_P	237_L	1.229	1.00
316_A	320_C	1.228	1.00
291_V	295_C	1.220	1.00
191_V	225_D	1.219	1.00
33_H	163_K	1.219	1.00
314_A	317_A	1.211	1.00
19_R	181_K	1.201	1.00
355_A	359_D	1.200	1.00
305_N	335_Q	1.200	1.00
256_Y	263_H	1.198	1.00
178_M	215_L	1.195	1.00
203_L	241_A	1.183	1.00
317_A	320_C	1.178	1.00
321_F	329_G	1.176	1.00
29_I	173_V	1.174	1.00
242_G	245_S	1.169	1.00
172_Q	175_T	1.168	1.00
170_I	174_L	1.166	1.00
396_A	399_Y	1.160	1.00
91_I	118_F	1.154	1.00
318_W	321_F	1.146	1.00
168_E	172_Q	1.141	1.00
198_R	202_E	1.138	1.00
256_Y	260_S	1.136	1.00
353_F	356_A	1.132	1.00
356_A	359_D	1.127	1.00
255_F	258_L	1.120	1.00
289_L	322_T	1.113	1.00
329_G	332_A	1.113	1.00
357_L	361_R	1.109	1.00
79_E	97_R	1.107	1.00
20_M	181_K	1.105	1.00
320_C	325_G	1.101	1.00
257_D	263_H	1.098	1.00
143_E	147_F	1.097	1.00
23_E	72_R	1.097	1.00
88_V	119_N	1.087	1.00
111_F	140_A	1.082	1.00
368_V	373_R	1.075	1.00
380_M	385_Y	1.068	1.00
395_E	398_A	1.068	1.00
406_F	410_I	1.065	1.00
263_H	267_R	1.064	1.00
270_A	273_A	1.063	1.00
347_N	352_A	1.062	1.00
347_N	393_H	1.057	1.00
395_E	399_Y	1.057	1.00
282_I	326_P	1.057	1.00
277_W	282_I	1.054	1.00
257_D	261_A	1.052	1.00
222_A	236_L	1.048	1.00
389_Y	393_H	1.046	1.00
14_Q	19_R	1.041	1.00
264_K	267_R	1.034	1.00
300_S	303_V	1.033	1.00
99_R	132_D	1.032	1.00
292_A	296_L	1.031	1.00
88_V	92_R	1.029	1.00
48_G	74_A	1.027	1.00
368_V	375_A	1.019	1.00
300_S	304_G	1.019	1.00
96_E	100_Q	1.010	1.00
197_R	201_A	1.008	1.00
246_A	249_D	1.006	1.00
392_A	400_A	0.999	1.00
302_D	305_N	0.994	1.00
97_R	101_N	0.993	1.00
320_C	324_V	0.992	1.00
314_A	318_W	0.985	1.00
266_V	271_P	0.985	1.00
336_A	341_A	0.983	1.00
261_A	264_K	0.978	1.00
297_A	301_E	0.969	1.00
20_M	180_D	0.967	1.00
351_T	354_K	0.967	1.00
237_L	242_G	0.966	1.00
345_K	350_Y	0.965	1.00
112_V	126_F	0.963	1.00
377_T	383_M	0.962	1.00
260_S	267_R	0.960	1.00
257_D	260_S	0.960	1.00
321_F	324_V	0.959	1.00
259_I	263_H	0.959	1.00
293_R	296_L	0.958	1.00
267_R	270_A	0.953	1.00
351_T	355_A	0.945	1.00
164_S	205_N	0.943	1.00
95_I	129_H	0.937	1.00
379_L	385_Y	0.935	1.00
339_Y	343_A	0.934	1.00
168_E	171_E	0.933	1.00
78_V	111_F	0.932	1.00
277_W	281_I	0.932	1.00
315_I	325_G	0.929	1.00
293_R	297_A	0.928	1.00
374_N	380_M	0.926	1.00
314_A	321_F	0.925	1.00
36_A	42_P	0.925	1.00
256_Y	261_A	0.924	1.00
167_T	171_E	0.922	1.00
236_L	239_E	0.921	1.00
262_L	266_V	0.918	1.00
355_A	358_A	0.918	1.00
208_A	211_A	0.916	1.00
369_P	372_L	0.916	1.00
179_E	192_L	0.912	1.00
200_I	214_T	0.911	1.00
171_E	194_D	0.910	1.00
330_E	354_K	0.906	1.00
365_D	372_L	0.905	1.00
301_E	305_N	0.904	1.00
368_V	376_P	0.901	1.00
396_A	400_A	0.896	1.00
370_V	373_R	0.896	1.00
43_R	46_E	0.894	1.00
200_I	211_A	0.889	1.00
285_G	289_L	0.889	1.00
326_P	329_G	0.886	1.00
372_L	375_A	0.880	1.00
277_W	280_R	0.880	1.00
199_A	202_E	0.880	1.00
191_V	231_V	0.878	1.00
291_V	294_R	0.877	1.00
310_A	313_V	0.876	1.00
249_D	252_G	0.876	1.00
337_I	341_A	0.875	1.00
237_L	244_R	0.874	1.00
69_V	73_Y	0.873	1.00
266_V	295_C	0.867	1.00
88_V	125_A	0.867	1.00
148_E	250_N	0.867	1.00
283_T	357_L	0.866	1.00
274_A	337_I	0.865	1.00
262_L	265_S	0.864	1.00
284_A	288_P	0.861	1.00
369_P	379_L	0.848	1.00
375_A	380_M	0.846	1.00
377_T	381_K	0.843	1.00
390_R	400_A	0.842	1.00
391_Y	394_D	0.840	1.00
360_A	363_R	0.839	1.00
310_A	318_W	0.838	1.00
263_H	297_A	0.837	1.00
335_Q	339_Y	0.837	1.00
357_L	363_R	0.837	1.00
389_Y	392_A	0.835	1.00
367_D	370_V	0.835	1.00
322_T	325_G	0.832	1.00
303_V	307_D	0.831	1.00
292_A	302_D	0.830	1.00
51_H	136_T	0.830	1.00
293_R	302_D	0.828	1.00
164_S	207_D	0.826	1.00
378_K	381_K	0.826	1.00
76_A	107_R	0.825	1.00
237_L	240_I	0.823	1.00
341_A	344_P	0.821	1.00
298_I	302_D	0.820	1.00
64_T	113_D	0.815	1.00
278_Y	337_I	0.813	1.00
369_P	375_A	0.812	1.00
138_I	143_E	0.810	1.00
253_D	256_Y	0.806	1.00
56_W	159_V	0.806	1.00
369_P	383_M	0.806	1.00
68_E	132_D	0.805	1.00
320_C	323_R	0.805	1.00
265_S	268_G	0.803	1.00
254_R	258_L	0.802	1.00
347_N	350_Y	0.792	0.99
274_A	281_I	0.788	0.99
286_G	290_Y	0.788	0.99
296_L	323_R	0.787	0.99
177_A	181_K	0.786	0.99
40_P	160_Y	0.786	0.99
283_T	288_P	0.785	0.99
356_A	363_R	0.785	0.99
79_E	108_T	0.782	0.99
339_Y	344_P	0.782	0.99
302_D	310_A	0.780	0.99
214_T	241_A	0.777	0.99
336_A	340_L	0.773	0.99
174_L	201_A	0.772	0.99
266_V	303_V	0.768	0.99
177_A	180_D	0.766	0.99
53_M	160_Y	0.761	0.99
314_A	324_V	0.760	0.99
268_G	405_Y	0.760	0.99
296_L	315_I	0.759	0.99
271_P	274_A	0.757	0.99
70_I	138_I	0.756	0.99
255_F	263_H	0.750	0.99
334_A	338_V	0.746	0.99
311_M	314_A	0.745	0.99
328_E	331_R	0.743	0.99
298_I	340_L	0.739	0.99
353_F	363_R	0.738	0.99
296_L	299_A	0.734	0.99
390_R	393_H	0.733	0.99
392_A	405_Y	0.732	0.99
314_A	325_G	0.731	0.99
292_A	295_C	0.730	0.99
85_T	129_H	0.730	0.99
81_I	95_I	0.729	0.99
35_L	42_P	0.729	0.99
194_D	198_R	0.728	0.99
320_C	332_A	0.727	0.99
61_T	162_L	0.727	0.99
311_M	317_A	0.725	0.99
372_L	379_L	0.725	0.99
381_K	386_G	0.724	0.99
326_P	331_R	0.724	0.99
332_A	335_Q	0.723	0.99
256_Y	266_V	0.722	0.99
338_V	342_C	0.722	0.99
137_F	145_P	0.719	0.99
117_R	124_D	0.718	0.99
406_F	409_E	0.717	0.99
86_S	90_E	0.716	0.99
384_G	389_Y	0.715	0.99
303_V	340_L	0.713	0.99
292_A	299_A	0.713	0.99
315_I	322_T	0.711	0.99
275_L	352_A	0.710	0.99
142_T	145_P	0.707	0.99
317_A	324_V	0.706	0.99
324_V	332_A	0.706	0.99
275_L	279_A	0.705	0.99
266_V	270_A	0.705	0.99
196_T	234_P	0.704	0.99
305_N	313_V	0.704	0.99
366_Y	409_E	0.703	0.99
303_V	306_A	0.702	0.99
264_K	269_S	0.701	0.99
274_A	277_W	0.695	0.99
295_C	298_I	0.694	0.99
58_P	61_T	0.692	0.99
98_A	102_R	0.692	0.99
384_G	387_Q	0.692	0.99
218_M	240_I	0.691	0.99
333_I	340_L	0.689	0.99
255_F	260_S	0.688	0.99
100_Q	104_A	0.688	0.99
403_E	406_F	0.688	0.99
169_D	172_Q	0.685	0.98
388_E	393_H	0.685	0.98
350_Y	357_L	0.683	0.98
255_F	259_I	0.682	0.98
298_I	303_V	0.681	0.98
313_V	320_C	0.681	0.98
402_G	408_P	0.681	0.98
329_G	336_A	0.681	0.98
380_M	383_M	0.681	0.98
263_H	268_G	0.680	0.98
404_V	409_E	0.678	0.98
294_R	297_A	0.675	0.98
241_A	245_S	0.674	0.98
399_Y	402_G	0.673	0.98
295_C	299_A	0.670	0.98
263_H	266_V	0.668	0.98
129_H	132_D	0.665	0.98
264_K	268_G	0.664	0.98
86_S	118_F	0.662	0.98
304_G	308_P	0.662	0.98
248_F	251_K	0.661	0.98
348_A	352_A	0.659	0.98
384_G	388_E	0.658	0.98
69_V	72_R	0.656	0.98
365_D	368_V	0.655	0.98
319_D	325_G	0.655	0.98
300_S	306_A	0.654	0.98
353_F	359_D	0.654	0.98
79_E	101_N	0.654	0.98
272_D	276_Y	0.653	0.98
349_V	353_F	0.652	0.98
389_Y	394_D	0.652	0.98
304_G	307_D	0.651	0.98
20_M	177_A	0.649	0.98
333_I	337_I	0.647	0.98
79_E	94_A	0.646	0.98
398_A	402_G	0.641	0.98
199_A	237_L	0.641	0.98
334_A	337_I	0.640	0.98
95_I	135_I	0.639	0.98
371_H	376_P	0.638	0.98
335_Q	341_A	0.636	0.98
379_L	383_M	0.633	0.97
396_A	406_F	0.632	0.97
265_S	271_P	0.628	0.97
232_L	237_L	0.626	0.97
377_T	385_Y	0.626	0.97
288_P	291_V	0.625	0.97
259_I	290_Y	0.624	0.97
165_L	169_D	0.621	0.97
256_Y	267_R	0.621	0.97
367_D	373_R	0.620	0.97
138_I	145_P	0.620	0.97
337_I	343_A	0.617	0.97
370_V	388_E	0.614	0.97
377_T	387_Q	0.614	0.97
144_N	147_F	0.614	0.97
204_V	207_D	0.612	0.97
240_I	244_R	0.612	0.97
331_R	350_Y	0.612	0.97
315_I	324_V	0.611	0.97
369_P	373_R	0.611	0.97
336_A	343_A	0.609	0.97
327_A	331_R	0.609	0.97
281_I	286_G	0.608	0.97
262_L	269_S	0.608	0.97
298_I	301_E	0.606	0.97
283_T	287_D	0.605	0.97
372_L	376_P	0.603	0.97
329_G	344_P	0.599	0.96
152_A	156_R	0.599	0.96
353_F	360_A	0.598	0.96
87_G	91_I	0.597	0.96
92_R	96_E	0.597	0.96
314_A	322_T	0.596	0.96
236_L	240_I	0.595	0.96
248_F	281_I	0.592	0.96
295_C	303_V	0.592	0.96
271_P	275_L	0.591	0.96
172_Q	176_Q	0.591	0.96
218_M	222_A	0.590	0.96
337_I	342_C	0.590	0.96
86_S	95_I	0.590	0.96
130_I	157_A	0.589	0.96
310_A	325_G	0.588	0.96
297_A	302_D	0.587	0.96
366_Y	370_V	0.585	0.96
258_L	262_L	0.585	0.96
55_L	66_L	0.583	0.96
271_P	279_A	0.583	0.96
255_F	266_V	0.582	0.96
334_A	341_A	0.582	0.96
81_I	112_V	0.581	0.96
407_P	410_I	0.580	0.96
225_D	236_L	0.576	0.96
326_P	333_I	0.576	0.96
211_A	215_L	0.575	0.96
95_I	99_R	0.574	0.96
17_A	68_E	0.574	0.96
296_L	306_A	0.574	0.96
386_G	393_H	0.571	0.95
310_A	314_A	0.571	0.95
42_P	45_I	0.571	0.95
234_P	240_I	0.569	0.95
246_A	258_L	0.568	0.95
306_A	309_R	0.568	0.95
268_G	271_P	0.567	0.95
238_T	242_G	0.567	0.95
383_M	387_Q	0.566	0.95
200_I	237_L	0.565	0.95
252_G	258_L	0.565	0.95
237_L	241_A	0.565	0.95
286_G	289_L	0.564	0.95
86_S	122_Q	0.563	0.95
45_I	70_I	0.562	0.95
289_L	318_W	0.562	0.95
348_A	351_T	0.561	0.95
174_L	215_L	0.561	0.95
295_C	302_D	0.560	0.95
130_I	149_L	0.558	0.95
293_R	299_A	0.556	0.95
294_R	298_I	0.556	0.95
280_R	283_T	0.555	0.95
326_P	332_A	0.553	0.95
395_E	403_E	0.553	0.95
400_A	403_E	0.553	0.95
306_A	310_A	0.552	0.94
368_V	371_H	0.552	0.94
394_D	397_N	0.551	0.94
346_S	349_V	0.548	0.94
336_A	339_Y	0.545	0.94
308_P	312_Q	0.544	0.94
356_A	361_R	0.542	0.94
276_Y	279_A	0.542	0.94
376_P	383_M	0.541	0.94
197_R	211_A	0.541	0.94
258_L	261_A	0.540	0.94
261_A	271_P	0.540	0.94
275_L	282_I	0.539	0.94
65_T	69_V	0.538	0.94
119_N	122_Q	0.538	0.94
116_H	142_T	0.538	0.94
305_N	338_V	0.538	0.94
404_V	407_P	0.537	0.94
94_A	98_A	0.537	0.94
258_L	268_G	0.535	0.94
346_S	356_A	0.535	0.94
248_F	255_F	0.534	0.93
246_A	251_K	0.530	0.93
402_G	406_F	0.529	0.93
256_Y	265_S	0.529	0.93
128_P	132_D	0.529	0.93
372_L	380_M	0.528	0.93
199_A	238_T	0.528	0.93
310_A	324_V	0.528	0.93
85_T	125_A	0.527	0.93
262_L	337_I	0.527	0.93
352_A	363_R	0.526	0.93
310_A	317_A	0.526	0.93
81_I	91_I	0.526	0.93
231_V	236_L	0.525	0.93
284_A	289_L	0.524	0.93
333_I	341_A	0.524	0.93
219_A	222_A	0.523	0.93
279_A	356_A	0.522	0.93
370_V	378_K	0.521	0.93
216_E	220_D	0.521	0.93
299_A	305_N	0.521	0.93
248_F	258_L	0.520	0.93
367_D	371_H	0.519	0.92
393_H	398_A	0.519	0.92
299_A	307_D	0.519	0.92
375_A	381_K	0.518	0.92
303_V	310_A	0.515	0.92
281_I	285_G	0.514	0.92
346_S	350_Y	0.514	0.92
260_S	266_V	0.512	0.92
84_V	125_A	0.512	0.92
392_A	395_E	0.512	0.92
338_V	341_A	0.512	0.92
279_A	360_A	0.508	0.92
32_Q	168_E	0.508	0.92
346_S	353_F	0.508	0.92
269_S	272_D	0.507	0.92
335_Q	338_V	0.506	0.92
136_T	143_E	0.505	0.91
99_R	129_H	0.504	0.91
111_F	122_Q	0.504	0.91
44_A	53_M	0.503	0.91
282_I	285_G	0.503	0.91
58_P	207_D	0.503	0.91
101_N	106_R	0.502	0.91
355_A	360_A	0.502	0.91
196_T	237_L	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pvsA	4	0.9709	100	0.386	Contact Map
4rh7A	1	0.9195	100	0.393	Contact Map
3vkgA	2	0.8859	100	0.47	Contact Map
4akgA	2	0.6264	100	0.556	Contact Map
1sxjD	1	0.6801	100	0.579	Contact Map
1iqpA	5	0.698	100	0.602	Contact Map
2chqA	3	0.6711	100	0.604	Contact Map
1sxjC	1	0.689	100	0.61	Contact Map
1sxjE	1	0.6577	100	0.623	Contact Map
3u61B	3	0.7002	100	0.636	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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