GREMLIN Database
YBEL - Uncharacterized protein YbeL
UniProt: P0AAT9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12851
Length: 160 (154)
Sequences: 263 (172)
Seq/√Len: 13.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
125_L142_L3.4650.99
120_V142_L3.2190.98
143_T146_P3.1310.98
116_S144_L3.1070.98
9_R139_P2.9750.97
144_L151_D2.8890.96
62_F90_L2.7730.96
87_W101_W2.6410.94
84_E96_K2.6120.94
95_D155_R2.3530.90
136_I143_T2.2680.88
78_F94_T2.2590.88
18_R56_R2.1060.83
116_S146_P2.0770.83
39_K42_E2.0570.82
13_A118_E1.9770.79
44_T63_A1.8620.75
50_E56_R1.7490.70
101_W107_D1.7450.70
91_A99_L1.7320.69
44_T53_R1.6570.66
58_D125_L1.6320.64
26_I88_Q1.6160.64
44_T47_E1.6050.63
98_Q107_D1.5950.63
134_L143_T1.5560.61
121_G139_P1.5420.60
15_L28_A1.5120.58
116_S139_P1.5000.58
114_Y155_R1.4990.58
90_L112_G1.4900.57
57_R83_K1.4850.57
42_E45_R1.4720.56
95_D114_Y1.4290.54
82_I99_L1.4040.53
10_E44_T1.3560.50
13_A64_M1.3550.50
103_E112_G1.3510.50
103_E107_D1.3370.49
13_A140_E1.2960.47
90_L99_L1.2900.46
81_V150_H1.2820.46
43_L150_H1.2780.46
121_G128_E1.2720.45
55_V82_I1.2460.44
128_E150_H1.2420.44
134_L146_P1.2200.43
116_S151_D1.2160.42
31_E55_V1.2150.42
50_E53_R1.2120.42
77_V124_N1.1910.41
95_D100_E1.1840.41
104_V108_L1.1840.41
38_I48_V1.1680.40
32_Q97_T1.1590.40
14_S118_E1.1520.39
35_E142_L1.1350.38
43_L62_F1.1220.38
123_G127_C1.1220.38
123_G145_C1.1220.38
130_C145_C1.1220.38
123_G148_C1.1220.38
127_C148_C1.1220.38
127_C145_C1.1220.38
127_C130_C1.1220.38
130_C148_C1.1220.38
123_G130_C1.1220.38
145_C148_C1.1220.38
100_E155_R1.1150.37
66_Y75_D1.1130.37
12_V45_R1.0810.36
87_W138_T1.0770.35
52_T56_R1.0690.35
116_S143_T1.0420.34
11_L48_V1.0400.34
78_F122_L1.0380.33
46_T108_L1.0340.33
42_E54_A1.0280.33
46_T49_D1.0230.33
33_A51_L1.0200.33
90_L110_H1.0180.33
41_G53_R1.0180.33
63_A136_I1.0070.32
62_F136_I1.0000.32
52_T55_V0.9890.31
34_R37_V0.9840.31
94_T103_E0.9800.31
17_E129_K0.9680.30
19_L59_L0.9630.30
94_T155_R0.9620.30
90_L107_D0.9560.30
34_R41_G0.9550.30
140_E143_T0.9530.30
19_L97_T0.9490.29
50_E93_I0.9400.29
120_V149_G0.9350.29
75_D80_R0.9260.28
57_R118_E0.9230.28
107_D119_V0.9200.28
76_S107_D0.9170.28
5_A146_P0.9100.28
51_L83_K0.9070.27
13_A142_L0.9060.27
24_R86_L0.9000.27
47_E155_R0.8910.27
50_E108_L0.8810.26
124_N139_P0.8800.26
119_V143_T0.8790.26
15_L41_G0.8780.26
42_E70_L0.8750.26
116_S149_G0.8730.26
43_L96_K0.8710.26
89_E97_T0.8670.26
76_S98_Q0.8610.26
115_H134_L0.8610.26
46_T53_R0.8530.25
36_R41_G0.8480.25
60_E89_E0.8410.25
45_R116_S0.8400.25
51_L136_I0.8310.24
12_V129_K0.8280.24
13_A67_E0.8230.24
88_Q92_D0.8180.24
97_T114_Y0.8130.24
92_D96_K0.8090.23
14_S139_P0.8090.23
90_L101_W0.8080.23
45_R53_R0.8070.23
99_L102_R0.8050.23
107_D114_Y0.7910.23
51_L157_P0.7830.22
21_N61_E0.7700.22
55_V91_A0.7680.22
118_E144_L0.7670.22
54_A97_T0.7670.22
67_E132_F0.7630.22
85_S101_W0.7590.22
46_T54_A0.7510.21
17_E62_F0.7480.21
57_R120_V0.7440.21
20_R154_Q0.7400.21
23_E33_A0.7210.20
9_R30_V0.7160.20
30_V107_D0.7150.20
25_D121_G0.7140.20
94_T121_G0.7040.20
91_A109_N0.7020.20
67_E82_I0.7020.20
17_E30_V0.7010.20
109_N152_Q0.6970.19
28_A31_E0.6950.19
113_V128_E0.6790.19
98_Q101_W0.6700.19
49_D53_R0.6660.18
47_E95_D0.6600.18
133_H152_Q0.6570.18
47_E88_Q0.6560.18
54_A146_P0.6560.18
47_E157_P0.6540.18
99_L131_H0.6540.18
111_H116_S0.6510.18
62_F120_V0.6470.18
48_V86_L0.6460.18
43_L72_E0.6450.18
39_K104_V0.6440.18
36_R50_E0.6420.18
83_K119_V0.6370.17
97_T136_I0.6340.17
76_S87_W0.6300.17
113_V152_Q0.6270.17
84_E107_D0.6260.17
31_E76_S0.6230.17
45_R49_D0.6230.17
20_R72_E0.6220.17
34_R134_L0.6200.17
55_V74_S0.6150.17
82_I135_P0.6140.17
40_T43_L0.6120.17
99_L106_Q0.6060.17
19_L134_L0.6040.16
93_I112_G0.6030.16
16_S99_L0.5970.16
54_A143_T0.5930.16
32_Q51_L0.5840.16
148_C153_F0.5810.16
130_C153_F0.5810.16
123_G153_F0.5810.16
127_C153_F0.5810.16
145_C153_F0.5810.16
21_N129_K0.5770.16
41_G104_V0.5740.16
109_N154_Q0.5730.16
6_Q89_E0.5720.16
29_L70_L0.5710.16
33_A116_S0.5690.15
87_W98_Q0.5640.15
20_R120_V0.5610.15
73_E106_Q0.5600.15
126_V154_Q0.5590.15
54_A58_D0.5580.15
15_L35_E0.5570.15
28_A128_E0.5550.15
103_E110_H0.5540.15
85_S122_L0.5540.15
120_V140_E0.5540.15
6_Q26_I0.5520.15
35_E154_Q0.5510.15
21_N65_S0.5460.15
36_R82_I0.5440.15
85_S89_E0.5420.15
17_E71_K0.5420.15
31_E152_Q0.5410.15
121_G140_E0.5410.15
87_W107_D0.5360.15
30_V50_E0.5310.14
14_S29_L0.5310.14
15_L52_T0.5290.14
90_L93_I0.5250.14
40_T61_E0.5160.14
55_V138_T0.5150.14
146_P152_Q0.5080.14
14_S23_E0.5050.14
101_W108_L0.5040.14
117_G130_C0.5030.14
117_G145_C0.5030.14
117_G127_C0.5030.14
117_G123_G0.5030.14
117_G148_C0.5030.14
119_V129_K0.5020.14
46_T58_D0.5000.14
26_I156_R0.5000.14
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4aybP 1 0.2188 93.3 0.902 Contact Map
3wwlA 1 0.2313 92.2 0.906 Contact Map
4qiwP 1 0.2125 92.1 0.906 Contact Map
3pwfA 4 0.9187 92 0.906 Contact Map
1vd4A 1 0.3125 91.9 0.906 Contact Map
1yc5A 1 0.775 91.1 0.908 Contact Map
2lcqA 1 0.8438 90.8 0.909 Contact Map
1m2kA 1 0.8438 90.3 0.91 Contact Map
1lkoA 3 0.9187 89 0.912 Contact Map
4twjA 1 0.7875 88.2 0.913 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0068 seconds.