GREMLIN Database
YBAV - Uncharacterized protein YbaV
UniProt: P0AAR8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13250
Length: 123 (102)
Sequences: 1677 (1558)
Seq/√Len: 154.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
83_K86_A4.6261.00
68_S71_E4.4811.00
102_D105_Q3.8781.00
69_A85_Q3.6101.00
85_Q89_S3.3881.00
104_K111_N3.3831.00
104_K114_V2.9151.00
77_N120_V2.8331.00
83_K113_L2.4801.00
89_S93_E2.1641.00
63_S66_N1.9991.00
90_Y105_Q1.9861.00
114_V118_L1.9511.00
76_M121_L1.8251.00
76_M120_V1.7951.00
69_A88_V1.7531.00
100_V114_V1.7441.00
99_T102_D1.6411.00
79_V83_K1.6141.00
69_A81_L1.5641.00
113_L116_R1.5151.00
76_M117_N1.5071.00
111_N115_E1.4951.00
103_L121_L1.4371.00
64_I121_L1.4211.00
98_K102_D1.3801.00
89_S92_E1.3651.00
86_A113_L1.3011.00
63_S122_T1.3001.00
94_Y102_D1.2751.00
109_M114_V1.2181.00
115_E118_L1.2171.00
100_V118_L1.2111.00
18_G22_S1.2061.00
14_L18_G1.2011.00
61_R122_T1.1431.00
112_S115_E1.1411.00
17_A21_H1.1361.00
110_G113_L1.1271.00
101_E118_L1.1050.99
67_A72_L1.1020.99
82_K86_A1.0850.99
101_E114_V1.0320.99
61_R119_A1.0300.99
62_V75_A1.0280.99
113_L117_N1.0260.99
97_F106_V1.0140.99
103_L114_V1.0110.99
83_K108_G0.9950.99
80_G106_V0.9520.98
86_A89_S0.9260.98
86_A107_P0.9000.98
101_E104_K0.8720.97
72_L91_R0.8710.97
82_K85_Q0.8690.97
86_A116_R0.8600.97
79_V113_L0.8510.97
77_N117_N0.8380.96
13_S16_C0.8150.96
78_G116_R0.8150.96
44_A48_A0.7990.95
100_V121_L0.7980.95
16_C19_M0.7930.95
110_G115_E0.7930.95
14_L21_H0.7890.95
80_G83_K0.7690.94
22_S25_A0.7680.94
117_N120_V0.7650.94
77_N86_A0.7490.94
67_A91_R0.7430.93
15_A24_L0.7290.93
106_V110_G0.7290.93
64_I96_P0.7240.92
107_P112_S0.7200.92
114_V121_L0.7170.92
18_G21_H0.7160.92
87_I97_F0.7130.92
83_K110_G0.7110.92
92_E96_P0.6970.91
17_A20_S0.6930.91
12_L16_C0.6910.91
64_I114_V0.6910.91
64_I100_V0.6900.90
69_A89_S0.6890.90
47_K50_V0.6860.90
67_A108_G0.6860.90
48_A55_S0.6760.90
81_L85_Q0.6600.88
79_V109_M0.6550.88
80_G108_G0.6480.87
48_A51_P0.6460.87
12_L46_S0.6460.87
90_Y94_Y0.6430.87
80_G84_A0.6420.87
80_G87_I0.6370.87
63_S96_P0.6210.85
80_G109_M0.6160.85
103_L110_G0.6160.85
42_P49_A0.6080.84
91_R108_G0.6050.84
67_A71_E0.5980.83
112_S116_R0.5960.83
51_P54_A0.5950.83
79_V117_N0.5940.83
25_A54_A0.5850.82
103_L117_N0.5830.81
66_N75_A0.5760.81
19_M22_S0.5750.81
17_A22_S0.5730.80
91_R106_V0.5730.80
63_S68_S0.5730.80
72_L122_T0.5710.80
10_I46_S0.5700.80
11_T16_C0.5690.80
67_A87_I0.5600.79
67_A97_F0.5550.78
107_P116_R0.5550.78
96_P116_R0.5540.78
83_K106_V0.5510.78
71_E75_A0.5510.78
107_P113_L0.5510.78
54_A57_E0.5480.77
8_L26_A0.5440.77
21_H24_L0.5440.77
99_T106_V0.5430.77
42_P45_Q0.5430.77
16_C21_H0.5420.77
42_P50_V0.5420.77
29_V42_P0.5410.76
43_A50_V0.5370.76
64_I94_Y0.5370.76
80_G110_G0.5340.75
22_S26_A0.5340.75
107_P110_G0.5340.75
86_A106_V0.5320.75
44_A56_D0.5300.75
28_S48_A0.5280.75
7_A43_A0.5270.75
7_A11_T0.5240.74
76_M111_N0.5210.74
82_K117_N0.5200.74
44_A54_A0.5180.73
53_K60_T0.5130.73
80_G88_V0.5110.72
53_K56_D0.5110.72
27_A49_A0.5090.72
11_T23_A0.5080.72
82_K108_G0.5080.72
19_M27_A0.5070.72
15_A23_A0.5060.72
84_A88_V0.5050.71
45_Q50_V0.5020.71
95_G103_L0.5000.71
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4pj0U 1 0.5935 99.6 0.484 Contact Map
3psiA 1 0.8618 99.6 0.51 Contact Map
3psfA 1 0.8618 99.5 0.528 Contact Map
3wu2U 1 0.6016 99.4 0.558 Contact Map
3bzcA 1 0.8618 99.3 0.573 Contact Map
2i5hA 1 0.9187 99.3 0.574 Contact Map
3ci0K 1 0.748 99.3 0.589 Contact Map
2duyA 1 0.5285 99.2 0.6 Contact Map
2eduA 1 0.748 99.2 0.608 Contact Map
2bcqA 1 0.7236 98.5 0.692 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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