GREMLIN Database
YBAN - Inner membrane protein YbaN
UniProt: P0AAR5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12843
Length: 125 (115)
Sequences: 1447 (1104)
Seq/√Len: 103.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
71_R117_V2.9631.00
11_W39_F2.8491.00
10_G39_F2.8411.00
78_I113_W2.5831.00
14_V32_I2.4391.00
104_I108_L2.3811.00
48_A52_Y2.3061.00
61_R65_K2.1641.00
47_H51_L2.0911.00
45_R49_W2.0531.00
47_H64_Q2.0281.00
9_I38_C1.9991.00
6_L42_S1.9931.00
26_L30_P1.9921.00
7_I42_S1.8831.00
82_L109_L1.8771.00
18_T22_V1.7461.00
30_P34_L1.7401.00
19_L23_L1.7341.00
15_V19_L1.6981.00
44_P48_A1.6751.00
30_P33_L1.6421.00
17_G32_I1.5881.00
14_V35_A1.5461.00
10_G38_C1.5251.00
18_T21_V1.5201.00
32_I56_F1.5151.00
6_L38_C1.4831.00
94_M97_V1.4381.00
19_L26_L1.4101.00
87_I91_F1.3911.00
40_A47_H1.3911.00
9_I13_A1.3660.99
69_M112_M1.3300.99
13_A35_A1.3080.99
49_W53_R1.2830.99
93_Q98_R1.2700.99
81_I109_L1.2190.99
70_P73_V1.2160.99
16_L26_L1.2010.99
11_W15_V1.1960.99
99_I103_V1.1810.99
19_L28_T1.1730.98
18_T32_I1.1700.98
85_F105_L1.1660.98
103_V107_C1.1650.98
13_A34_L1.1510.98
34_L38_C1.1390.98
81_I105_L1.1360.98
52_Y61_R1.1310.98
53_R56_F1.1250.98
35_A39_F1.1220.98
4_I8_I1.1150.98
26_L31_F1.1060.98
69_M114_R1.0900.97
85_F101_L1.0570.97
74_K117_V1.0530.97
36_A40_A1.0520.97
16_L31_F1.0490.97
108_L112_M1.0470.97
67_H115_I1.0340.97
78_I109_L1.0200.96
107_C111_Y0.9940.96
95_P99_I0.9900.96
67_H116_P0.9820.95
89_L98_R0.9770.95
93_Q97_V0.9640.95
110_F114_R0.9560.95
95_P98_R0.9510.94
108_L111_Y0.9430.94
72_G76_R0.9330.94
100_M104_I0.9310.94
36_A60_L0.9240.94
82_L105_L0.9150.93
75_P79_L0.9080.93
83_L87_I0.9080.93
21_V28_T0.8960.93
97_V100_M0.8730.92
51_L64_Q0.8660.91
11_W14_V0.8580.91
79_L83_L0.8400.90
43_S46_F0.8290.89
37_W41_R0.8220.89
69_M73_V0.8160.89
85_F98_R0.8120.88
14_V39_F0.8080.88
13_A38_C0.8020.88
86_A90_W0.7980.87
94_M98_R0.7870.87
71_R75_P0.7830.86
6_L37_W0.7800.86
54_S58_S0.7680.85
82_L86_A0.7680.85
28_T60_L0.7640.85
76_R80_L0.7640.85
7_I11_W0.7630.85
3_R44_P0.7600.85
28_T32_I0.7530.84
85_F92_V0.7460.84
58_S62_F0.7450.84
69_M115_I0.7400.83
88_S101_L0.7350.83
25_V30_P0.7350.83
7_I46_F0.7270.82
51_L60_L0.7240.82
50_L56_F0.7220.82
100_M103_V0.7210.82
36_A51_L0.7190.81
23_L38_C0.7180.81
68_A117_V0.7140.81
39_F42_S0.6930.79
81_I84_T0.6890.79
10_G88_S0.6880.78
75_P78_I0.6760.77
101_L108_L0.6750.77
92_V98_R0.6720.77
107_C110_F0.6700.77
29_T66_H0.6700.77
57_G60_L0.6680.76
85_F89_L0.6680.76
88_S91_F0.6630.76
44_P47_H0.6620.76
29_T105_L0.6530.75
96_W100_M0.6500.74
22_V28_T0.6460.74
80_L84_T0.6310.72
5_I9_I0.6280.72
96_W103_V0.6240.71
103_V110_F0.6220.71
16_L23_L0.6160.70
105_L109_L0.6130.70
56_F59_Y0.6090.70
13_A30_P0.5970.68
92_V97_V0.5960.68
7_I43_S0.5940.68
82_L85_F0.5890.67
6_L46_F0.5880.67
96_W99_I0.5840.66
25_V34_L0.5840.66
19_L96_W0.5780.66
81_I108_L0.5710.65
39_F88_S0.5700.65
20_G23_L0.5640.64
84_T88_S0.5630.64
99_I102_L0.5620.63
63_W82_L0.5610.63
36_A73_V0.5580.63
88_S93_Q0.5570.63
11_W46_F0.5540.62
59_Y62_F0.5520.62
109_L113_W0.5470.61
14_V18_T0.5400.60
22_V25_V0.5360.60
98_R102_L0.5330.59
82_L89_L0.5290.59
71_R87_I0.5260.58
61_R90_W0.5260.58
88_S105_L0.5210.58
93_Q101_L0.5180.57
29_T33_L0.5180.57
73_V77_A0.5170.57
16_L19_L0.5160.57
4_I15_V0.5130.57
96_W106_A0.5120.56
83_L86_A0.5110.56
3_R7_I0.5090.56
12_L98_R0.5090.56
74_K112_M0.5090.56
57_G61_R0.5060.56
84_T108_L0.5060.56
63_W66_H0.5050.55
89_L101_L0.5000.55
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2rddB 1 0.256 44.7 0.92 Contact Map
2i68A 2 0.592 40.6 0.922 Contact Map
4xnjA 1 0.872 15.5 0.937 Contact Map
4tphA 2 0.816 14.6 0.938 Contact Map
3tx3A 2 0.864 14.4 0.938 Contact Map
2cfqA 1 0.88 13.3 0.939 Contact Map
3o7qA 1 0.912 12.3 0.94 Contact Map
4j05A 3 0.96 10.4 0.941 Contact Map
1pw4A 1 0.896 9.2 0.943 Contact Map
3wajA 1 0.776 7 0.946 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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