GREMLIN Database
YBAA - Uncharacterized protein YbaA
UniProt: P0AAQ6 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11099
Length: 117 (115)
Sequences: 591 (432)
Seq/√Len: 40.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
75_S78_V5.2471.00
37_R72_E4.6561.00
32_E91_R4.2881.00
13_A65_E3.5241.00
5_D79_R3.3831.00
15_K18_A3.2211.00
35_A71_I2.8431.00
84_Q88_S2.4911.00
17_D21_E2.2961.00
78_V82_A2.0130.99
53_D56_M1.9840.99
43_A65_E1.9230.99
73_Y82_A1.8430.98
14_D63_N1.8410.98
9_V22_M1.7520.97
6_G68_F1.7060.97
20_R24_A1.7030.97
13_A63_N1.6890.97
74_P78_V1.6010.96
8_V107_I1.5960.95
48_D55_R1.5490.95
52_T56_M1.5450.95
17_D20_R1.5210.94
26_A30_F1.5160.94
81_A85_K1.5010.94
44_S112_E1.4900.93
16_K42_W1.4260.92
12_P15_K1.3950.91
49_G52_T1.3930.91
56_M59_K1.3920.91
46_V52_T1.3810.90
53_D60_A1.3150.88
4_V41_C1.2790.87
20_R114_I1.2490.85
20_R115_I1.2320.85
32_E89_D1.2270.84
29_L91_R1.1630.81
33_F86_M1.1430.80
39_V70_W1.1410.80
44_S79_R1.1170.78
7_F104_K1.1080.78
7_F40_E1.1040.77
5_D35_A1.0980.77
5_D71_I1.0950.77
38_I73_Y1.0770.76
58_V107_I1.0690.75
93_K96_G1.0480.74
37_R53_D1.0430.73
43_A46_V1.0410.73
83_N86_M1.0300.72
49_G58_V1.0150.71
48_D56_M1.0010.70
46_V49_G0.9960.70
21_E25_K0.9850.69
43_A47_P0.9690.68
79_R110_G0.9600.67
10_A107_I0.9600.67
21_E24_A0.9560.66
56_M60_A0.9520.66
19_Y22_M0.9290.64
60_A65_E0.9250.64
30_F38_I0.9200.63
51_V104_K0.9160.63
27_A38_I0.9150.63
73_Y83_N0.9130.63
5_D83_N0.9130.63
29_L86_M0.9040.62
23_A115_I0.8950.61
33_F81_A0.8900.61
4_V44_S0.8790.60
48_D76_K0.8650.59
19_Y27_A0.8430.57
48_D60_A0.8430.57
35_A38_I0.8360.56
3_Y44_S0.8320.56
30_F86_M0.8240.55
57_A107_I0.8240.55
51_V56_M0.8030.53
82_A86_M0.7980.53
74_P82_A0.7980.53
45_D79_R0.7970.52
52_T58_V0.7890.52
41_C83_N0.7880.52
26_A87_M0.7710.50
7_F110_G0.7580.49
42_W73_Y0.7580.49
103_G107_I0.7540.49
9_V108_Y0.7490.48
87_M92_M0.7480.48
89_D92_M0.7410.47
49_G107_I0.7350.47
28_P31_K0.7270.46
6_G54_F0.7220.46
19_Y33_F0.7210.45
93_K97_E0.7160.45
50_K104_K0.7080.44
79_R83_N0.7070.44
72_E113_S0.6930.43
61_E104_K0.6920.43
85_K92_M0.6640.40
54_F68_F0.6640.40
42_W82_A0.6630.40
82_A87_M0.6590.40
47_P107_I0.6580.40
36_L72_E0.6580.40
47_P56_M0.6500.39
23_A26_A0.6460.39
55_R60_A0.6440.39
7_F83_N0.6440.39
47_P52_T0.6350.38
33_F108_Y0.6300.37
25_K62_E0.6270.37
13_A43_A0.6260.37
33_F82_A0.6250.37
30_F73_Y0.6160.36
5_D110_G0.6120.36
52_T57_A0.6120.36
38_I82_A0.6110.36
4_V68_F0.6070.35
71_I106_M0.6000.35
3_Y19_Y0.5990.35
11_V42_W0.5950.34
25_K28_P0.5940.34
49_G57_A0.5920.34
19_Y40_E0.5880.34
38_I69_S0.5870.34
94_E98_S0.5860.34
41_C54_F0.5760.33
30_F42_W0.5750.33
25_K94_E0.5750.33
81_A84_Q0.5710.32
94_E97_E0.5690.32
16_K73_Y0.5690.32
23_A114_I0.5670.32
83_N108_Y0.5620.32
1_M103_G0.5600.32
52_T107_I0.5590.31
49_G103_G0.5560.31
27_A31_K0.5550.31
22_M26_A0.5540.31
29_L32_E0.5480.31
32_E85_K0.5460.30
73_Y94_E0.5460.30
77_E97_E0.5420.30
20_R44_S0.5390.30
12_P102_D0.5390.30
6_G69_S0.5370.30
53_D57_A0.5370.30
16_K65_E0.5360.30
21_E62_E0.5340.30
80_D90_P0.5290.29
7_F71_I0.5280.29
8_V76_K0.5270.29
55_R65_E0.5270.29
19_Y83_N0.5270.29
24_A28_P0.5230.29
18_A96_G0.5220.29
14_D61_E0.5220.29
33_F85_K0.5210.29
24_A115_I0.5210.29
26_A39_V0.5210.29
28_P112_E0.5180.28
76_K80_D0.5160.28
42_W74_P0.5110.28
7_F54_F0.5080.28
15_K83_N0.5060.27
19_Y39_V0.5050.27
99_M103_G0.5050.27
73_Y78_V0.5020.27
88_S92_M0.5010.27
90_P93_K0.5010.27
4_V65_E0.5000.27
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2okqA 3 1 100 0.008 Contact Map
2fiuA 2 0.7863 51.3 0.935 Contact Map
1vqyA 6 0.7521 17.6 0.949 Contact Map
3lo3A 3 0.7778 15.5 0.951 Contact Map
3hx9A 2 0.7863 14 0.951 Contact Map
3hhlA 3 0.7607 11.6 0.953 Contact Map
1vqsA 6 0.8291 11.3 0.953 Contact Map
4noxA 1 0 9.8 0.955 Contact Map
2zdoA 2 0.8376 9.5 0.955 Contact Map
1ytmA 1 0.3162 7.3 0.957 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0058 seconds.