GREMLIN Database
NAPG - Ferredoxin-type protein NapG
UniProt: P0AAL3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12064
Length: 231 (195)
Sequences: 539 (408)
Seq/√Len: 29.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
47_R51_A5.5821.00
75_T97_I4.4251.00
54_E58_A3.6351.00
162_T182_H3.3381.00
136_Q142_F3.2261.00
47_R54_E2.8701.00
148_D152_R2.6451.00
108_A116_L2.5580.99
198_L202_A2.3560.99
15_L21_T2.3330.99
76_L92_F2.3080.99
135_D138_N2.2220.98
70_A106_P2.2130.98
95_R193_E2.0990.98
106_P109_K2.0890.98
22_A26_A2.0680.97
75_T92_F2.0570.97
75_T94_A2.0070.97
159_E185_A1.9950.97
54_E63_R1.9940.97
66_Q69_Q1.8790.95
112_P129_G1.8620.95
128_M187_T1.8010.94
35_Q39_A1.7700.94
47_R63_R1.7140.93
105_I120_I1.7080.92
10_G19_V1.7010.92
47_R89_T1.6800.92
101_M187_T1.6690.91
48_P188_G1.6440.91
101_M126_A1.6360.91
13_R23_G1.6150.90
122_S125_D1.5670.89
208_L212_K1.5570.88
52_I60_A1.5530.88
101_M123_I1.5390.88
62_V113_S1.4960.86
193_E205_V1.4960.86
18_V22_A1.4630.85
49_P190_G1.3730.81
48_P90_P1.3630.80
98_P194_K1.3310.79
126_A187_T1.3210.78
51_A116_L1.2850.76
137_E183_S1.2290.73
90_P205_V1.2260.73
186_C189_C1.2260.73
113_S131_A1.2260.73
149_V161_I1.2150.72
181_V193_E1.2010.71
68_V78_L1.1970.71
48_P179_P1.1740.69
80_T86_S1.1660.69
76_L100_E1.1490.68
82_A86_S1.1460.68
78_L88_G1.1280.66
119_E122_S1.1220.66
72_P190_G1.1110.65
106_P116_L1.1100.65
98_P187_T1.1000.64
161_I203_I1.0790.63
179_P189_C1.0780.63
45_R178_L1.0780.63
53_N184_D1.0760.63
13_R17_D1.0660.62
56_A113_S1.0610.61
108_A118_R1.0570.61
35_Q41_A1.0470.60
161_I182_H1.0470.60
17_D20_R1.0400.60
66_Q112_P1.0320.59
114_G132_V1.0220.58
141_N146_R1.0210.58
97_I116_L1.0010.57
193_E203_I0.9930.56
49_P90_P0.9850.56
99_C102_C0.9830.55
14_F17_D0.9820.55
29_G32_L0.9770.55
49_P116_L0.9760.55
26_A81_L0.9750.55
151_Y197_V0.9740.55
191_K195_V0.9430.52
9_N23_G0.9380.52
111_C192_C0.9330.52
61_C192_C0.9330.52
111_C154_C0.9330.52
61_C154_C0.9330.52
61_C196_C0.9330.52
67_C71_C0.9330.52
111_C196_C0.9330.52
111_C150_C0.9330.52
71_C139_C0.9330.52
71_C147_C0.9330.52
71_C150_C0.9330.52
71_C154_C0.9330.52
71_C192_C0.9330.52
71_C196_C0.9330.52
107_C192_C0.9330.52
107_C150_C0.9330.52
107_C139_C0.9330.52
107_C111_C0.9330.52
71_C111_C0.9330.52
71_C107_C0.9330.52
107_C196_C0.9330.52
111_C147_C0.9330.52
111_C139_C0.9330.52
67_C107_C0.9330.52
67_C111_C0.9330.52
67_C139_C0.9330.52
67_C147_C0.9330.52
67_C150_C0.9330.52
67_C154_C0.9330.52
107_C154_C0.9330.52
67_C196_C0.9330.52
67_C192_C0.9330.52
61_C150_C0.9330.52
61_C147_C0.9330.52
139_C192_C0.9330.52
154_C196_C0.9330.52
107_C147_C0.9330.52
154_C192_C0.9330.52
139_C196_C0.9330.52
139_C147_C0.9330.52
147_C192_C0.9330.52
139_C150_C0.9330.52
150_C196_C0.9330.52
139_C154_C0.9330.52
150_C192_C0.9330.52
150_C154_C0.9330.52
147_C196_C0.9330.52
61_C139_C0.9330.52
61_C111_C0.9330.52
192_C196_C0.9330.52
61_C107_C0.9330.52
147_C150_C0.9330.52
61_C71_C0.9330.52
147_C154_C0.9330.52
61_C67_C0.9330.52
90_P188_G0.9320.52
171_T174_H0.9320.52
143_Q146_R0.9290.51
48_P57_F0.9120.50
130_L212_K0.9120.50
19_V40_R0.9100.50
173_K210_L0.9080.50
50_G129_G0.9000.49
23_G27_A0.8770.47
48_P190_G0.8720.47
80_T84_G0.8610.46
129_G205_V0.8600.46
138_N200_Q0.8570.46
26_A33_G0.8500.45
120_I124_D0.8420.44
52_I56_A0.8390.44
14_F18_V0.8340.44
49_P76_L0.8310.44
62_V66_Q0.8290.43
156_K185_A0.8260.43
130_L208_L0.8260.43
70_A109_K0.8250.43
84_G140_L0.8090.42
153_E195_V0.8060.42
49_P188_G0.8050.42
52_I121_E0.8040.42
165_L180_T0.8040.42
127_R130_L0.8010.41
152_R193_E0.7980.41
146_R177_F0.7950.41
146_R153_E0.7910.41
146_R174_H0.7820.40
108_A120_I0.7770.40
125_D173_K0.7760.39
137_E182_H0.7720.39
149_V153_E0.7700.39
37_Q184_D0.7690.39
151_Y159_E0.7690.39
181_V188_G0.7640.39
63_R181_V0.7600.38
19_V87_A0.7590.38
78_L123_I0.7570.38
51_A88_G0.7550.38
9_N31_A0.7540.38
90_P179_P0.7520.38
50_G72_P0.7490.37
121_E184_D0.7460.37
45_R68_V0.7430.37
16_R30_V0.7340.36
50_G179_P0.7330.36
164_E180_T0.7320.36
35_Q38_T0.7300.36
14_F41_A0.7190.35
131_A190_G0.7160.35
59_S63_R0.7140.35
95_R181_V0.7140.35
156_K159_E0.7090.35
9_N14_F0.7050.34
11_R19_V0.7020.34
64_C107_C0.7010.34
64_C139_C0.7010.34
61_C64_C0.7010.34
64_C147_C0.7010.34
64_C150_C0.7010.34
64_C154_C0.7010.34
64_C71_C0.7010.34
64_C192_C0.7010.34
64_C67_C0.7010.34
64_C196_C0.7010.34
64_C111_C0.7010.34
27_A43_G0.6990.34
76_L90_P0.6990.34
90_P190_G0.6970.34
79_A128_M0.6930.33
143_Q148_D0.6920.33
131_A181_V0.6920.33
101_M105_I0.6920.33
67_C99_C0.6900.33
99_C192_C0.6900.33
71_C99_C0.6900.33
61_C99_C0.6900.33
99_C107_C0.6900.33
99_C111_C0.6900.33
99_C196_C0.6900.33
99_C154_C0.6900.33
99_C150_C0.6900.33
99_C147_C0.6900.33
99_C139_C0.6900.33
54_E141_N0.6900.33
57_F108_A0.6870.33
16_R25_L0.6840.33
101_M106_P0.6760.32
51_A128_M0.6750.32
141_N148_D0.6750.32
9_N17_D0.6720.32
105_I108_A0.6590.31
148_D191_K0.6550.31
28_V31_A0.6530.31
151_Y163_L0.6520.31
116_L190_G0.6440.30
9_N96_D0.6380.30
141_N176_R0.6370.30
18_V164_E0.6350.30
30_V33_G0.6350.30
38_T85_L0.6340.29
93_V96_D0.6300.29
42_S201_P0.6290.29
72_P188_G0.6290.29
140_L146_R0.6160.28
97_I194_K0.6150.28
62_V112_P0.6150.28
98_P116_L0.6140.28
13_R31_A0.6110.28
124_D130_L0.6060.28
72_P163_L0.6040.28
69_Q149_V0.6010.27
25_L87_A0.5950.27
28_V39_A0.5890.27
22_A82_A0.5890.27
162_T174_H0.5840.26
134_V156_K0.5820.26
28_V93_V0.5790.26
8_Q16_R0.5770.26
8_Q93_V0.5760.26
24_G87_A0.5740.26
26_A31_A0.5700.25
132_V183_S0.5660.25
19_V24_G0.5620.25
82_A142_F0.5540.25
22_A39_A0.5490.24
173_K177_F0.5470.24
48_P128_M0.5440.24
17_D25_L0.5440.24
181_V205_V0.5400.24
25_L81_L0.5380.24
73_Y101_M0.5350.23
11_R51_A0.5340.23
159_E178_L0.5330.23
110_V206_L0.5330.23
141_N177_F0.5280.23
93_V200_Q0.5270.23
49_P57_F0.5240.23
105_I123_I0.5220.23
151_Y164_E0.5220.23
106_P117_D0.5150.22
148_D151_Y0.5100.22
63_R89_T0.5090.22
77_K93_V0.5080.22
123_I126_A0.5060.22
40_R44_V0.5060.22
97_I206_L0.5050.22
17_D85_L0.5010.22
16_R29_G0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1kqfB 3 0.7706 99.9 0.609 Contact Map
2ivfB 1 0.6667 99.9 0.619 Contact Map
1h0hB 1 0.6623 99.9 0.622 Contact Map
1ti6B 2 0.6537 99.9 0.633 Contact Map
2vpzB 2 0.658 99.9 0.656 Contact Map
1q16B 2 0.6797 99.8 0.698 Contact Map
4z3xE 2 0.6234 99.8 0.698 Contact Map
2c42A 2 0.8745 99.3 0.784 Contact Map
3mm5B 2 0.8355 99.2 0.789 Contact Map
2fgoA 1 0.3247 99.1 0.801 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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