GREMLIN Database
YNFG - Probable anaerobic dimethyl sulfoxide reductase chain YnfG
UniProt: P0AAJ1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13845
Length: 205 (175)
Sequences: 3343 (1884)
Seq/√Len: 142.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
76_T84_M3.0051.00
27_F131_S2.8711.00
78_V108_A2.8101.00
103_R116_Y2.7721.00
71_D180_N2.5311.00
139_P142_V2.4771.00
106_H123_M2.3821.00
84_M114_P2.3731.00
73_P86_K2.3051.00
7_F128_G2.2711.00
84_M94_V2.1591.00
130_Y134_A2.0531.00
142_V150_L1.9901.00
151_E161_K1.9021.00
6_G155_I1.8791.00
36_F124_T1.8761.00
132_R137_K1.8721.00
170_P173_R1.8171.00
87_R134_A1.7791.00
91_F128_G1.7631.00
28_K127_D1.7511.00
14_C20_C1.7261.00
14_C17_C1.6911.00
9_I150_L1.6861.00
78_V104_Y1.6801.00
79_C99_C1.6651.00
103_R106_H1.6631.00
85_H93_V1.6621.00
18_K21_E1.6531.00
17_C20_C1.6501.00
15_T147_L1.6361.00
79_C105_C1.6311.00
132_R143_E1.6291.00
117_N124_T1.6171.00
91_F133_V1.6091.00
27_F132_R1.6071.00
4_Q71_D1.6051.00
8_F162_H1.5981.00
138_Q143_E1.5851.00
72_D77_K1.5771.00
103_R118_A1.5731.00
155_I159_R1.5691.00
116_Y123_M1.5651.00
161_K164_T1.5511.00
99_C105_C1.5411.00
128_G181_I1.5311.00
87_R93_V1.5011.00
95_D98_V1.4801.00
76_T86_K1.4561.00
157_E160_Q1.4531.00
23_A144_S1.4481.00
85_H95_D1.4401.00
153_G157_E1.4071.00
114_P123_M1.4041.00
170_P178_K1.3751.00
14_C145_C1.3581.00
36_F39_I1.3551.00
117_N120_K1.3501.00
8_F184_K1.3471.00
161_K165_L1.3321.00
93_V130_Y1.3281.00
87_R91_F1.3091.00
12_S184_K1.2801.00
160_Q163_G1.2781.00
159_R164_T1.2661.00
66_S181_I1.2661.00
28_K131_S1.2631.00
53_V56_Q1.2631.00
154_P157_E1.2461.00
151_E165_L1.2451.00
17_C145_C1.2281.00
74_A177_T1.1981.00
73_P76_T1.1661.00
128_G133_V1.1611.00
99_C102_C1.1580.99
151_E162_H1.1480.99
9_I64_S1.1440.99
128_G152_F1.1420.99
6_G158_L1.1210.99
81_S84_M1.1000.99
19_T144_S1.0930.99
133_V152_F1.0880.99
4_Q180_N1.0530.99
20_C145_C1.0530.99
170_P182_V1.0430.99
172_P175_H1.0400.99
163_G167_A1.0290.99
66_S150_L1.0210.99
11_S64_S1.0140.99
72_D178_K1.0110.99
163_G166_A1.0050.99
74_A108_A1.0000.99
27_F140_I0.9920.98
7_F142_V0.9900.98
103_R123_M0.9860.98
39_I45_G0.9780.98
137_K143_E0.9780.98
83_A98_V0.9750.98
79_C102_C0.9740.98
170_P175_H0.9660.98
102_C105_C0.9610.98
65_I171_L0.9530.98
64_S150_L0.9380.98
104_Y107_M0.9310.98
81_S100_I0.9280.98
94_V123_M0.9270.98
38_R115_Q0.9230.97
96_E122_H0.9220.97
53_V57_N0.9150.97
93_V127_D0.9010.97
132_R140_I0.8990.97
176_F183_I0.8990.97
37_R150_L0.8870.97
166_A182_V0.8860.97
160_Q164_T0.8650.96
80_P105_C0.8640.96
171_L177_T0.8630.96
37_R42_Y0.8530.96
39_I42_Y0.8490.96
158_L163_G0.8460.96
28_K140_I0.8340.95
54_W57_N0.8300.95
168_V184_K0.8270.95
164_T167_A0.8250.95
41_E60_A0.8200.95
38_R43_A0.8180.95
86_K92_V0.8160.95
78_V107_M0.8140.95
41_E44_G0.8070.95
35_S38_R0.8050.94
37_R64_S0.8010.94
8_F165_L0.7980.94
37_R41_E0.7980.94
64_S183_I0.7970.94
127_D131_S0.7900.94
80_P99_C0.7860.94
89_D134_A0.7850.94
11_S63_L0.7760.93
5_Y152_F0.7750.93
9_I66_S0.7710.93
116_Y120_K0.7700.93
40_Y44_G0.7700.93
106_H118_A0.7690.93
30_L36_F0.7650.93
176_F179_P0.7640.93
91_F130_Y0.7630.93
80_P100_I0.7620.93
87_R130_Y0.7590.93
13_R149_A0.7570.92
139_P150_L0.7520.92
6_G180_N0.7510.92
38_R42_Y0.7500.92
36_F43_A0.7460.92
19_T22_L0.7450.92
94_V114_P0.7450.92
37_R66_S0.7440.92
81_S85_H0.7430.92
104_Y108_A0.7400.92
5_Y133_V0.7320.91
23_A140_I0.7320.91
10_D13_R0.7320.91
167_A174_A0.7300.91
71_D178_K0.7300.91
89_D93_V0.7300.91
159_R163_G0.7280.91
169_A173_R0.7250.91
71_D86_K0.7230.91
76_T85_H0.7200.91
173_R176_F0.7190.90
78_V84_M0.7130.90
35_S39_I0.7070.90
126_C129_C0.7040.90
116_Y121_G0.6990.89
39_I43_A0.6910.89
43_A60_A0.6900.89
15_T146_P0.6870.88
138_Q151_E0.6820.88
38_R45_G0.6810.88
118_A121_G0.6810.88
172_P176_F0.6790.88
5_Y91_F0.6790.88
162_H165_L0.6770.88
19_T26_D0.6630.87
117_N121_G0.6560.86
45_G56_Q0.6510.86
5_Y89_D0.6480.85
81_S94_V0.6460.85
158_L162_H0.6350.84
19_T140_I0.6340.84
35_S40_Y0.6320.84
81_S102_C0.6310.84
4_Q86_K0.6250.83
86_K91_F0.6250.83
100_I104_Y0.6250.83
82_G98_V0.6240.83
10_D165_L0.6240.83
125_K129_C0.6230.83
165_L184_K0.6230.83
34_V37_R0.6220.83
138_Q142_V0.6170.82
27_F127_D0.6160.82
8_F160_Q0.6120.82
81_S98_V0.6100.82
4_Q156_E0.6080.81
25_K30_L0.6000.81
148_R151_E0.5990.80
9_I181_I0.5980.80
45_G58_V0.5960.80
115_Q124_T0.5950.80
171_L175_H0.5930.80
66_S128_G0.5920.80
26_D143_E0.5900.79
174_A178_K0.5880.79
112_G115_Q0.5870.79
73_P114_P0.5870.79
96_E120_K0.5860.79
38_R65_I0.5850.79
19_T146_P0.5850.79
64_S68_N0.5840.79
45_G55_H0.5820.79
37_R44_G0.5810.78
100_I105_C0.5700.77
36_F41_E0.5690.77
16_G20_C0.5680.77
68_N113_A0.5670.77
37_R43_A0.5660.77
7_F64_S0.5610.76
65_I68_N0.5600.76
175_H178_K0.5580.76
44_G61_Y0.5560.75
5_Y154_P0.5560.75
111_Y179_P0.5540.75
124_T127_D0.5540.75
24_C129_C0.5530.75
69_H133_V0.5520.75
55_H58_V0.5510.75
134_A137_K0.5490.74
159_R167_A0.5460.74
153_G158_L0.5430.74
16_G62_Y0.5410.73
87_R133_V0.5380.73
39_I44_G0.5380.73
16_G149_A0.5370.73
169_A172_P0.5370.73
158_L161_K0.5350.73
12_S182_V0.5320.72
103_R124_T0.5310.72
103_R107_M0.5260.71
162_H166_A0.5250.71
7_F66_S0.5230.71
169_A184_K0.5230.71
33_E36_F0.5220.71
80_P102_C0.5210.71
85_H98_V0.5210.71
15_T18_K0.5130.69
179_P183_I0.5110.69
69_H92_V0.5070.69
35_S42_Y0.5070.69
9_I183_I0.5040.68
16_G19_T0.5040.68
31_G34_V0.5040.68
52_G55_H0.5000.68
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2ivfB 1 0.9902 100 0.349 Contact Map
1ti6B 2 0.9463 100 0.362 Contact Map
1kqfB 3 0.9902 100 0.403 Contact Map
2vpzB 2 0.922 100 0.408 Contact Map
1h0hB 1 0.9512 100 0.423 Contact Map
1q16B 2 1 100 0.436 Contact Map
4z3xE 2 0.8049 100 0.579 Contact Map
3mm5B 2 0.9756 99.8 0.684 Contact Map
1jnrB 1 0.678 99.5 0.761 Contact Map
3or1B 2 0.9463 99.4 0.771 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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