ARAG - ECOLI - GREMLIN Contacts

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ARAG - Arabinose import ATP-binding protein AraG

UniProt:	P0AAF3	Sequences: MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10058
Length:	504 (392)
Sequences:	2505 (1952)
Seq/√Len:	98.6

ECOLI - ARAG YTFR YPHE MGLA ALSA XYLG LSRA RBSA MACB
BACSU - RBSA YUFO YKPA YFMM TAGH YVRA
HALSA - Q9HR21 Q9HMX3 Q9HMW0
SULSO - Y2030 Y1893

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
63_S	70_E	4.951	1.00
34_Q	212_A	4.074	1.00
12_G	25_D	4.005	1.00
121_N	138_D	3.937	1.00
262_R	278_A	3.924	1.00
24_T	220_R	3.912	1.00
125_G	129_K	3.568	1.00
37_A	210_S	3.544	1.00
36_H	214_T	3.506	1.00
67_N	163_K	3.353	1.00
312_Q	319_P	3.317	1.00
300_K	306_T	3.258	1.00
264_D	312_Q	3.211	1.00
263_L	277_L	3.122	1.00
259_E	262_R	3.081	1.00
9_S	29_D	3.080	1.00
383_I	393_A	3.038	1.00
73_F	82_A	2.910	1.00
262_R	314_Y	2.888	1.00
35_V	186_I	2.882	1.00
265_A	274_P	2.847	1.00
119_L	123_E	2.836	1.00
123_E	126_L	2.833	1.00
12_G	27_S	2.805	1.00
223_K	239_A	2.795	1.00
238_Q	244_D	2.746	1.00
11_R	63_S	2.646	1.00
263_L	266_V	2.629	1.00
226_T	229_Q	2.597	1.00
21_K	24_T	2.582	1.00
10_F	53_L	2.544	1.00
187_R	208_A	2.533	1.00
122_Y	126_L	2.530	1.00
259_E	278_A	2.476	1.00
16_T	21_K	2.449	1.00
126_L	130_H	2.446	1.00
17_F	57_Y	2.432	1.00
210_S	227_D	2.429	1.00
180_D	208_A	2.428	1.00
370_I	375_E	2.410	1.00
258_E	281_S	2.279	1.00
139_T	143_Y	2.236	1.00
9_S	65_V	2.224	1.00
346_I	357_I	2.200	1.00
87_I	167_F	2.185	1.00
14_G	21_K	2.173	1.00
10_F	13_I	2.141	1.00
116_N	119_L	2.136	1.00
11_R	65_V	2.096	1.00
381_H	385_S	2.056	1.00
66_I	164_I	2.006	1.00
14_G	25_D	1.997	1.00
16_T	61_T	1.983	1.00
318_Q	331_A	1.944	1.00
56_N	88_Y	1.897	1.00
74_S	78_A	1.878	1.00
65_V	70_E	1.865	1.00
259_E	280_R	1.857	1.00
279_V	285_V	1.828	1.00
355_I	388_I	1.813	1.00
30_C	195_V	1.808	1.00
356_N	375_E	1.799	1.00
100_A	121_N	1.795	1.00
163_K	194_R	1.790	1.00
383_I	390_T	1.790	1.00
93_L	141_L	1.760	1.00
267_K	274_P	1.744	1.00
16_T	60_T	1.741	1.00
99_V	135_I	1.725	1.00
382_H	388_I	1.720	1.00
30_C	164_I	1.710	1.00
130_H	192_E	1.708	1.00
7_Y	195_V	1.695	1.00
129_K	134_D	1.681	1.00
323_R	327_H	1.658	1.00
50_L	86_I	1.656	1.00
136_D	139_T	1.640	1.00
8_L	66_I	1.587	1.00
264_D	314_Y	1.579	1.00
13_I	52_I	1.577	1.00
380_D	384_R	1.571	1.00
190_R	211_D	1.567	1.00
12_G	61_T	1.551	1.00
188_E	191_K	1.509	1.00
52_I	60_T	1.504	1.00
27_S	221_Y	1.466	1.00
18_P	21_K	1.463	1.00
69_Q	82_A	1.459	1.00
214_T	221_Y	1.454	1.00
118_S	122_Y	1.452	1.00
36_H	224_T	1.436	1.00
183_F	209_L	1.435	1.00
315_I	320_I	1.424	1.00
98_T	101_E	1.422	1.00
301_G	308_I	1.400	1.00
207_F	236_L	1.391	0.99
130_H	188_E	1.379	0.99
18_P	391_P	1.376	0.99
235_A	238_Q	1.336	0.99
225_F	230_Q	1.318	0.99
376_E	394_E	1.313	0.99
109_P	115_V	1.307	0.99
32_A	195_V	1.305	0.99
341_K	347_P	1.305	0.99
277_L	285_V	1.304	0.99
374_W	377_N	1.302	0.99
50_L	199_V	1.302	0.99
54_S	86_I	1.299	0.99
350_S	353_D	1.296	0.99
29_D	212_A	1.288	0.99
269_P	309_T	1.283	0.99
114_I	369_V	1.277	0.99
96_E	142_K	1.269	0.99
8_L	53_L	1.263	0.99
277_L	287_L	1.244	0.99
186_I	209_L	1.242	0.99
91_L	173_S	1.242	0.99
94_V	105_L	1.239	0.99
264_D	278_A	1.238	0.99
377_N	381_H	1.237	0.99
153_E	156_K	1.235	0.99
145_S	148_Q	1.233	0.99
7_Y	164_I	1.228	0.99
296_S	338_E	1.226	0.99
78_A	81_N	1.223	0.99
380_D	393_A	1.223	0.99
119_L	122_Y	1.212	0.99
225_F	229_Q	1.207	0.99
187_R	190_R	1.200	0.98
345_I	397_I	1.197	0.98
101_E	117_R	1.196	0.98
371_N	374_W	1.196	0.98
95_P	149_W	1.194	0.98
125_G	137_P	1.192	0.98
351_V	390_T	1.189	0.98
18_P	22_A	1.175	0.98
32_A	163_K	1.171	0.98
186_I	198_Y	1.167	0.98
123_E	161_N	1.147	0.98
268_A	309_T	1.140	0.98
256_Y	280_R	1.134	0.98
99_V	144_L	1.129	0.98
39_M	203_M	1.127	0.98
14_G	61_T	1.122	0.98
268_A	301_G	1.120	0.98
186_I	196_I	1.117	0.98
71_M	82_A	1.116	0.98
73_F	78_A	1.112	0.97
339_D	342_A	1.111	0.97
30_C	197_L	1.108	0.97
110_H	116_N	1.099	0.97
266_V	301_G	1.086	0.97
221_Y	224_T	1.084	0.97
162_A	165_I	1.077	0.97
352_R	376_E	1.074	0.97
225_F	239_A	1.068	0.97
122_Y	125_G	1.067	0.97
231_V	235_A	1.065	0.97
260_R	316_D	1.055	0.96
181_N	184_R	1.054	0.96
39_M	236_L	1.054	0.96
141_L	152_V	1.053	0.96
7_Y	66_I	1.053	0.96
300_K	343_E	1.051	0.96
259_E	264_D	1.048	0.96
314_Y	319_P	1.046	0.96
131_L	155_A	1.046	0.96
66_I	163_K	1.041	0.96
75_D	78_A	1.040	0.96
127_Q	159_A	1.035	0.96
100_A	137_P	1.031	0.96
204_E	232_D	1.028	0.96
103_I	152_V	1.023	0.96
10_F	28_F	1.021	0.96
25_D	220_R	1.010	0.96
85_A	162_A	1.007	0.95
132_G	188_E	1.005	0.95
236_L	240_M	0.999	0.95
92_H	167_F	0.997	0.95
188_E	192_E	0.994	0.95
263_L	302_M	0.993	0.95
31_Y	212_A	0.987	0.95
91_L	172_S	0.985	0.95
213_I	227_D	0.984	0.95
51_K	88_Y	0.979	0.95
25_D	61_T	0.979	0.95
262_R	317_Q	0.970	0.94
346_I	349_H	0.969	0.94
391_P	395_Q	0.968	0.94
99_V	139_T	0.966	0.94
121_N	125_G	0.966	0.94
73_F	76_T	0.962	0.94
395_Q	398_M	0.960	0.94
352_R	394_E	0.960	0.94
179_I	202_R	0.959	0.94
8_L	164_I	0.959	0.94
226_T	230_Q	0.959	0.94
128_L	155_A	0.956	0.94
26_I	216_F	0.950	0.94
7_Y	30_C	0.945	0.94
348_V	398_M	0.944	0.94
363_H	378_N	0.943	0.94
47_S	51_K	0.935	0.93
365_L	368_C	0.934	0.93
214_T	224_T	0.934	0.93
215_V	239_A	0.933	0.93
173_S	291_V	0.932	0.93
109_P	120_L	0.929	0.93
167_F	196_I	0.926	0.93
14_G	24_T	0.917	0.93
326_S	330_A	0.915	0.92
52_I	59_P	0.911	0.92
240_M	243_R	0.911	0.92
212_A	226_T	0.911	0.92
53_L	64_V	0.909	0.92
328_A	333_M	0.906	0.92
128_L	133_M	0.904	0.92
247_D	250_G	0.891	0.91
7_Y	67_N	0.888	0.91
236_L	242_G	0.888	0.91
64_V	73_F	0.886	0.91
140_P	143_Y	0.884	0.91
237_V	240_M	0.882	0.91
125_G	138_D	0.882	0.91
352_R	375_E	0.881	0.91
11_R	27_S	0.879	0.91
18_P	24_T	0.877	0.91
126_L	129_K	0.877	0.91
268_A	272_R	0.875	0.91
270_G	273_T	0.874	0.91
261_L	266_V	0.870	0.90
355_I	378_N	0.867	0.90
109_P	123_E	0.859	0.90
325_P	328_A	0.857	0.90
35_V	190_R	0.846	0.89
381_H	384_R	0.845	0.89
133_M	151_M	0.845	0.89
210_S	213_I	0.841	0.89
364_V	378_N	0.840	0.89
241_V	245_I	0.833	0.88
257_G	281_S	0.832	0.88
77_T	81_N	0.827	0.88
265_A	310_A	0.827	0.88
237_V	242_G	0.826	0.88
251_W	254_R	0.825	0.88
365_L	371_N	0.824	0.88
396_L	399_N	0.822	0.88
110_H	113_G	0.821	0.88
299_M	335_L	0.817	0.88
324_K	327_H	0.816	0.87
225_F	235_A	0.815	0.87
104_Y	120_L	0.810	0.87
80_L	160_R	0.810	0.87
198_Y	202_R	0.809	0.87
22_A	391_P	0.805	0.87
180_D	184_R	0.804	0.87
230_Q	235_A	0.802	0.87
90_E	341_K	0.799	0.86
390_T	395_Q	0.796	0.86
303_F	335_L	0.795	0.86
58_A	72_S	0.793	0.86
206_I	227_D	0.793	0.86
322_I	327_H	0.793	0.86
268_A	271_V	0.792	0.86
212_A	224_T	0.790	0.86
322_I	328_A	0.784	0.85
237_V	241_V	0.782	0.85
146_I	173_S	0.782	0.85
198_Y	206_I	0.777	0.85
93_L	149_W	0.777	0.85
103_I	124_A	0.774	0.85
32_A	67_N	0.772	0.84
298_L	302_M	0.769	0.84
204_E	208_A	0.768	0.84
121_N	137_P	0.767	0.84
18_P	390_T	0.760	0.83
39_M	215_V	0.759	0.83
337_P	343_E	0.757	0.83
16_T	19_G	0.755	0.83
28_F	197_L	0.754	0.83
171_T	182_L	0.751	0.83
29_D	65_V	0.749	0.83
265_A	276_S	0.748	0.82
100_A	104_Y	0.747	0.82
78_A	82_A	0.745	0.82
16_T	22_A	0.739	0.82
267_K	310_A	0.739	0.82
49_L	216_F	0.738	0.82
229_Q	232_D	0.737	0.82
300_K	305_G	0.735	0.81
277_L	298_L	0.734	0.81
28_F	36_H	0.732	0.81
207_F	210_S	0.731	0.81
93_L	152_V	0.729	0.81
260_R	281_S	0.729	0.81
355_I	379_A	0.728	0.81
207_F	213_I	0.728	0.81
376_E	380_D	0.728	0.81
187_R	191_K	0.727	0.81
287_L	299_M	0.727	0.81
359_A	363_H	0.726	0.81
230_Q	233_H	0.725	0.80
99_V	152_V	0.725	0.80
257_G	280_R	0.722	0.80
22_A	52_I	0.720	0.80
329_I	358_S	0.719	0.80
245_I	250_G	0.717	0.80
124_A	128_L	0.710	0.79
20_V	44_A	0.709	0.79
366_G	371_N	0.709	0.79
223_K	226_T	0.704	0.79
262_R	312_Q	0.704	0.79
91_L	146_I	0.703	0.78
259_E	314_Y	0.702	0.78
59_P	72_S	0.702	0.78
353_D	372_N	0.702	0.78
98_T	140_P	0.702	0.78
164_I	195_V	0.700	0.78
380_D	383_I	0.699	0.78
392_G	395_Q	0.699	0.78
66_I	82_A	0.697	0.78
157_A	167_F	0.696	0.78
240_M	245_I	0.695	0.78
149_W	172_S	0.694	0.78
207_F	231_V	0.687	0.77
325_P	335_L	0.686	0.77
308_I	321_D	0.685	0.77
225_F	228_M	0.684	0.76
139_T	148_Q	0.681	0.76
349_H	353_D	0.680	0.76
100_A	120_L	0.680	0.76
265_A	314_Y	0.679	0.76
156_K	339_D	0.679	0.76
373_G	377_N	0.677	0.76
31_Y	195_V	0.677	0.76
256_Y	259_E	0.677	0.76
287_L	298_L	0.677	0.76
64_V	71_M	0.675	0.76
51_K	56_N	0.675	0.76
30_C	36_H	0.674	0.75
137_P	140_P	0.673	0.75
147_G	151_M	0.672	0.75
290_L	293_A	0.672	0.75
35_V	187_R	0.671	0.75
87_I	149_W	0.669	0.75
242_G	245_I	0.669	0.75
23_L	52_I	0.668	0.75
232_D	235_A	0.668	0.75
223_K	229_Q	0.667	0.75
295_R	338_E	0.667	0.75
200_S	210_S	0.665	0.74
235_A	239_A	0.665	0.74
54_S	80_L	0.665	0.74
383_I	388_I	0.665	0.74
207_F	227_D	0.663	0.74
393_A	396_L	0.662	0.74
28_F	38_L	0.662	0.74
10_F	27_S	0.661	0.74
267_K	276_S	0.661	0.74
144_L	148_Q	0.659	0.74
327_H	330_A	0.658	0.74
167_F	182_L	0.654	0.73
175_S	178_E	0.653	0.73
51_K	92_H	0.652	0.73
377_N	380_D	0.652	0.73
291_V	295_R	0.652	0.73
157_A	165_I	0.650	0.73
111_K	116_N	0.649	0.73
28_F	195_V	0.646	0.72
121_N	124_A	0.646	0.72
23_L	128_L	0.643	0.72
100_A	109_P	0.640	0.72
289_G	292_G	0.640	0.72
351_V	383_I	0.638	0.71
359_A	362_K	0.636	0.71
103_I	159_A	0.636	0.71
100_A	138_D	0.634	0.71
175_S	349_H	0.633	0.71
11_R	29_D	0.630	0.70
125_G	134_D	0.629	0.70
243_R	249_Y	0.629	0.70
245_I	249_Y	0.628	0.70
30_C	66_I	0.627	0.70
239_A	242_G	0.626	0.70
261_L	279_V	0.625	0.70
53_L	166_A	0.625	0.70
54_S	87_I	0.625	0.70
16_T	27_S	0.623	0.70
393_A	397_I	0.623	0.70
226_T	233_H	0.623	0.70
289_G	340_R	0.623	0.70
41_E	243_R	0.620	0.69
52_I	57_Y	0.618	0.69
41_E	175_S	0.618	0.69
135_I	155_A	0.618	0.69
128_L	131_L	0.617	0.69
10_F	166_A	0.616	0.69
190_R	209_L	0.614	0.69
91_L	153_E	0.613	0.68
207_F	232_D	0.612	0.68
290_L	295_R	0.610	0.68
145_S	175_S	0.609	0.68
51_K	157_A	0.609	0.68
100_A	124_A	0.609	0.68
352_R	379_A	0.608	0.68
184_R	188_E	0.606	0.67
200_S	206_I	0.606	0.67
111_K	114_I	0.606	0.67
292_G	354_N	0.605	0.67
153_E	199_V	0.601	0.67
339_D	345_I	0.601	0.67
33_G	38_L	0.601	0.67
376_E	393_A	0.600	0.67
93_L	165_I	0.600	0.67
31_Y	226_T	0.600	0.67
96_E	140_P	0.599	0.67
271_V	309_T	0.599	0.67
206_I	213_I	0.598	0.66
281_S	316_D	0.597	0.66
66_I	71_M	0.596	0.66
218_D	389_K	0.595	0.66
128_L	137_P	0.590	0.65
108_L	120_L	0.586	0.65
169_E	201_H	0.585	0.65
90_E	153_E	0.584	0.65
15_K	60_T	0.584	0.65
258_E	316_D	0.584	0.65
7_Y	34_Q	0.582	0.64
315_I	331_A	0.582	0.64
10_F	50_L	0.582	0.64
221_Y	239_A	0.581	0.64
107_Q	160_R	0.580	0.64
156_K	160_R	0.579	0.64
269_P	275_I	0.578	0.64
301_G	306_T	0.577	0.64
296_S	335_L	0.577	0.64
50_L	166_A	0.577	0.64
131_L	185_V	0.577	0.64
340_R	344_G	0.576	0.64
8_L	179_I	0.575	0.63
147_G	291_V	0.574	0.63
283_E	292_G	0.573	0.63
184_R	208_A	0.573	0.63
191_K	367_G	0.573	0.63
41_E	241_V	0.572	0.63
40_G	43_G	0.572	0.63
31_Y	34_Q	0.570	0.63
303_F	358_S	0.570	0.63
93_L	158_L	0.570	0.63
92_H	155_A	0.569	0.63
287_L	309_T	0.568	0.63
31_Y	35_V	0.567	0.62
203_M	236_L	0.567	0.62
103_I	127_Q	0.566	0.62
251_W	279_V	0.565	0.62
14_G	22_A	0.565	0.62
127_Q	131_L	0.565	0.62
73_F	84_V	0.564	0.62
314_Y	317_Q	0.564	0.62
150_Q	170_P	0.563	0.62
289_G	294_G	0.563	0.62
38_L	50_L	0.563	0.62
128_L	136_D	0.562	0.62
285_V	310_A	0.562	0.62
150_Q	202_R	0.561	0.62
106_G	206_I	0.560	0.61
337_P	342_A	0.559	0.61
23_L	90_E	0.558	0.61
183_F	216_F	0.557	0.61
260_R	266_V	0.557	0.61
38_L	354_N	0.556	0.61
272_R	301_G	0.556	0.61
132_G	184_R	0.556	0.61
337_P	344_G	0.555	0.61
391_P	399_N	0.555	0.61
330_A	361_R	0.554	0.61
263_L	313_V	0.554	0.61
45_G	62_G	0.553	0.60
282_G	292_G	0.552	0.60
13_I	50_L	0.552	0.60
286_G	289_G	0.551	0.60
167_F	198_Y	0.550	0.60
338_E	344_G	0.549	0.60
260_R	279_V	0.549	0.60
309_T	312_Q	0.548	0.60
41_E	153_E	0.548	0.60
135_I	139_T	0.548	0.60
206_I	221_Y	0.547	0.60
253_P	256_Y	0.546	0.60
258_E	384_R	0.545	0.59
282_G	290_L	0.545	0.59
82_A	164_I	0.542	0.59
99_V	186_I	0.542	0.59
213_I	236_L	0.542	0.59
351_V	388_I	0.542	0.59
14_G	27_S	0.540	0.59
146_I	175_S	0.539	0.59
7_Y	32_A	0.538	0.58
85_A	91_L	0.537	0.58
143_Y	148_Q	0.536	0.58
39_M	216_F	0.536	0.58
200_S	209_L	0.536	0.58
115_V	360_R	0.535	0.58
104_Y	160_R	0.534	0.58
236_L	239_A	0.533	0.58
107_Q	159_A	0.533	0.58
124_A	137_P	0.533	0.58
156_K	195_V	0.533	0.58
100_A	125_G	0.533	0.58
109_P	113_G	0.532	0.58
237_V	243_R	0.532	0.58
20_V	391_P	0.531	0.57
80_L	88_Y	0.531	0.57
71_M	74_S	0.531	0.57
372_N	375_E	0.531	0.57
38_L	178_E	0.531	0.57
104_Y	123_E	0.530	0.57
141_L	165_I	0.530	0.57
197_L	213_I	0.529	0.57
227_D	230_Q	0.529	0.57
104_Y	124_A	0.528	0.57
98_T	105_L	0.527	0.57
270_G	309_T	0.527	0.57
263_L	276_S	0.526	0.57
32_A	191_K	0.526	0.57
73_F	79_A	0.526	0.57
91_L	151_M	0.525	0.57
41_E	202_R	0.524	0.56
167_F	179_I	0.524	0.56
80_L	107_Q	0.523	0.56
23_L	216_F	0.522	0.56
258_E	262_R	0.521	0.56
11_R	25_D	0.521	0.56
147_G	150_Q	0.520	0.56
303_F	334_M	0.519	0.56
186_I	346_I	0.519	0.56
91_L	341_K	0.518	0.56
359_A	385_S	0.518	0.56
86_I	160_R	0.517	0.55
39_M	291_V	0.517	0.55
335_L	386_L	0.517	0.55
146_I	172_S	0.516	0.55
11_R	84_V	0.516	0.55
236_L	241_V	0.514	0.55
233_H	244_D	0.514	0.55
276_S	311_G	0.513	0.55
91_L	141_L	0.513	0.55
263_L	268_A	0.513	0.55
40_G	45_G	0.512	0.55
284_I	287_L	0.512	0.55
162_A	178_E	0.512	0.55
182_L	186_I	0.512	0.55
283_E	289_G	0.511	0.55
66_I	85_A	0.511	0.55
44_A	153_E	0.511	0.55
170_P	178_E	0.511	0.55
327_H	331_A	0.511	0.55
341_K	345_I	0.511	0.55
183_F	210_S	0.510	0.54
257_G	262_R	0.510	0.54
282_G	289_G	0.510	0.54
292_G	304_G	0.509	0.54
40_G	46_K	0.509	0.54
254_R	257_G	0.509	0.54
124_A	127_Q	0.509	0.54
81_N	111_K	0.508	0.54
67_N	70_E	0.508	0.54
21_K	61_T	0.507	0.54
23_L	26_I	0.507	0.54
288_F	292_G	0.507	0.54
54_S	88_Y	0.507	0.54
120_L	131_L	0.507	0.54
54_S	147_G	0.507	0.54
288_F	294_G	0.506	0.54
51_K	57_Y	0.506	0.54
149_W	165_I	0.506	0.54
222_V	225_F	0.505	0.54
124_A	159_A	0.504	0.54
17_F	178_E	0.504	0.54
92_H	160_R	0.503	0.53
54_S	57_Y	0.503	0.53
64_V	181_N	0.502	0.53
289_G	304_G	0.502	0.53
312_Q	321_D	0.501	0.53
40_G	62_G	0.501	0.53
34_Q	68_G	0.501	0.53
30_C	60_T	0.501	0.53
10_F	26_I	0.500	0.53

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4q9hA	1	0.9603	100	0.408	Contact Map
4finA	2	0.8929	100	0.442	Contact Map
4f4cA	1	0.9484	100	0.446	Contact Map
3ux8A	2	0.8591	100	0.474	Contact Map
1yqtA	1	0.9028	100	0.476	Contact Map
3bk7A	1	0.9226	100	0.488	Contact Map
3ozxA	1	0.8909	100	0.496	Contact Map
2iw3A	2	0.8948	100	0.499	Contact Map
3j16B	1	0.9107	100	0.517	Contact Map
3tuiC	2	0.631	100	0.517	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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