TYRP - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

TYRP - Tyrosine-specific transport protein

UniProt:	P0AAD4	Sequences: MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVMLVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFVMALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQFLIAAGLLPEVG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11041
Length:	403 (371)
Sequences:	29960 (19561)
Seq/√Len:	1015.6

ECOLI - TYRP TNAB MTR POTE YBAT PHEP GABP ANSP AROP FRLA PROY MMUP YIFK LYSP CYCA ADIC PUUP PLAP YJEM GADC YGJI CADB YJEH YCAM ARCD
BACSU - STET AAPA ASPP YBXG YHDG YBEC ROCC YBGF YVBW YTNA YDGF GABP YFNA YECA ROCE HUTM ARCD YNDE GERKB YCGH YDAO GERBB GERAB YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97XM0 Q97Y76 Q97WS3 Q97X49 Q7LXI7 Q97ZB5 Q97VA6 Q97Z63 Q97VA8 Q97U33 Q97WD4 Q97VR4 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
44_W	226_L	3.297	1.00
260_Q	263_R	2.823	1.00
132_G	320_L	2.822	1.00
358_Q	362_H	2.820	1.00
72_K	80_Q	2.817	1.00
207_M	213_K	2.749	1.00
9_V	220_I	2.684	1.00
306_N	309_G	2.664	1.00
212_R	216_W	2.650	1.00
380_V	384_G	2.609	1.00
312_L	315_G	2.467	1.00
270_H	274_A	2.459	1.00
216_W	220_I	2.459	1.00
308_V	312_L	2.422	1.00
209_G	212_R	2.369	1.00
84_G	301_L	2.312	1.00
309_G	312_L	2.271	1.00
72_K	77_R	2.229	1.00
356_T	360_R	2.221	1.00
151_S	155_I	2.193	1.00
133_G	137_V	2.185	1.00
162_V	166_P	2.167	1.00
213_K	216_W	2.156	1.00
355_L	359_S	2.137	1.00
206_Y	296_D	2.110	1.00
71_A	83_T	2.078	1.00
299_A	303_Q	2.077	1.00
374_R	378_V	2.055	1.00
358_Q	361_K	2.039	1.00
9_V	224_I	2.020	1.00
8_S	207_M	2.007	1.00
373_G	377_L	2.005	1.00
378_V	382_L	1.982	1.00
241_D	244_T	1.966	1.00
349_L	355_L	1.920	1.00
368_Y	371_K	1.905	1.00
308_V	311_R	1.897	1.00
75_L	79_G	1.859	1.00
386_A	390_V	1.849	1.00
305_S	308_V	1.792	1.00
304_R	314_T	1.784	1.00
349_L	353_S	1.764	1.00
169_H	173_L	1.754	1.00
350_I	381_F	1.745	1.00
140_S	144_L	1.744	1.00
380_V	383_C	1.737	1.00
307_T	311_R	1.737	1.00
12_V	221_G	1.728	1.00
102_A	127_F	1.718	1.00
205_S	303_Q	1.716	1.00
304_R	307_T	1.669	1.00
45_A	49_Y	1.669	1.00
258_L	261_A	1.668	1.00
219_I	223_A	1.665	1.00
382_L	386_A	1.658	1.00
155_I	159_V	1.656	1.00
260_Q	264_E	1.648	1.00
61_V	73_R	1.636	1.00
257_G	260_Q	1.633	1.00
307_T	312_L	1.633	1.00
375_P	379_V	1.630	1.00
306_N	313_Q	1.617	1.00
76_G	79_G	1.598	1.00
351_I	355_L	1.597	1.00
164_L	235_A	1.596	1.00
307_T	310_G	1.567	1.00
13_A	224_I	1.563	1.00
306_N	312_L	1.562	1.00
52_L	219_I	1.561	1.00
347_L	351_I	1.556	1.00
375_P	378_V	1.551	1.00
309_G	313_Q	1.551	1.00
43_L	190_I	1.545	1.00
209_G	213_K	1.534	1.00
273_L	277_L	1.534	1.00
210_N	213_K	1.524	1.00
136_C	313_Q	1.510	1.00
223_A	227_V	1.507	1.00
333_F	337_L	1.505	1.00
370_V	373_G	1.491	1.00
377_L	380_V	1.487	1.00
161_L	231_F	1.486	1.00
306_N	310_G	1.482	1.00
174_L	177_P	1.481	1.00
39_L	186_A	1.480	1.00
125_L	327_L	1.475	1.00
16_T	225_P	1.470	1.00
129_F	320_L	1.466	1.00
45_A	379_V	1.463	1.00
317_I	321_P	1.449	1.00
312_L	316_A	1.449	1.00
361_K	364_P	1.444	1.00
99_I	287_F	1.444	1.00
119_S	122_A	1.441	1.00
7_G	147_R	1.441	1.00
75_L	358_Q	1.419	1.00
156_F	278_F	1.417	1.00
125_L	129_F	1.400	1.00
168_I	238_G	1.366	1.00
311_R	314_T	1.366	1.00
51_A	218_F	1.365	1.00
132_G	316_A	1.364	1.00
99_I	128_T	1.356	1.00
324_A	328_F	1.354	1.00
372_G	376_A	1.353	1.00
370_V	377_L	1.346	1.00
37_L	234_V	1.341	1.00
253_A	257_G	1.338	1.00
48_C	219_I	1.328	1.00
369_R	373_G	1.326	1.00
169_H	172_N	1.324	1.00
106_L	123_G	1.319	1.00
7_G	143_D	1.318	1.00
6_L	10_F	1.317	1.00
172_N	176_L	1.308	1.00
259_L	262_L	1.298	1.00
344_L	347_L	1.290	1.00
226_L	230_I	1.284	1.00
149_L	285_T	1.270	1.00
69_T	73_R	1.267	1.00
203_I	292_L	1.266	1.00
32_G	35_V	1.260	1.00
354_L	358_Q	1.260	1.00
385_I	389_G	1.258	1.00
166_P	170_K	1.241	1.00
258_L	263_R	1.241	1.00
311_R	315_G	1.241	1.00
377_L	381_F	1.239	1.00
376_A	380_V	1.230	1.00
348_A	352_P	1.230	1.00
383_C	387_V	1.228	1.00
131_A	287_F	1.227	1.00
242_S	245_F	1.225	1.00
269_P	273_L	1.220	1.00
316_A	319_F	1.217	1.00
26_L	29_A	1.213	1.00
371_K	375_P	1.213	1.00
160_M	164_L	1.209	1.00
353_S	356_T	1.200	1.00
102_A	280_D	1.191	1.00
347_L	355_L	1.188	1.00
71_A	79_G	1.188	1.00
323_L	327_L	1.187	1.00
107_A	111_S	1.186	1.00
125_L	324_A	1.181	1.00
257_G	263_R	1.181	1.00
98_Y	286_S	1.178	1.00
346_V	353_S	1.177	1.00
135_V	288_L	1.164	1.00
227_V	231_F	1.149	1.00
54_L	67_L	1.144	1.00
51_A	222_S	1.143	1.00
384_G	388_I	1.143	1.00
328_F	331_R	1.137	1.00
168_I	171_V	1.136	1.00
346_V	351_I	1.135	1.00
344_L	351_I	1.127	1.00
379_V	383_C	1.117	1.00
305_S	312_L	1.115	1.00
56_E	360_R	1.114	1.00
165_L	235_A	1.112	1.00
8_S	217_V	1.110	1.00
314_T	317_I	1.108	1.00
154_I	158_V	1.107	1.00
323_L	326_A	1.107	1.00
234_V	238_G	1.106	1.00
165_L	169_H	1.106	1.00
326_A	330_P	1.105	1.00
378_V	381_F	1.104	1.00
384_G	387_V	1.102	1.00
263_R	272_E	1.102	1.00
324_A	327_L	1.101	1.00
46_L	383_C	1.099	1.00
355_L	358_Q	1.096	1.00
344_L	348_A	1.089	1.00
64_D	205_S	1.085	1.00
306_N	311_R	1.081	1.00
353_S	380_V	1.074	1.00
315_G	319_F	1.069	1.00
63_A	69_T	1.063	1.00
132_G	136_C	1.061	1.00
78_Y	82_L	1.059	1.00
171_V	174_L	1.057	1.00
123_G	126_L	1.057	1.00
184_L	386_A	1.056	1.00
81_W	85_F	1.056	1.00
106_L	110_I	1.056	1.00
369_R	372_G	1.043	1.00
344_L	355_L	1.043	1.00
257_G	261_A	1.042	1.00
346_V	349_L	1.041	1.00
327_L	330_P	1.041	1.00
144_L	148_F	1.039	1.00
370_V	374_R	1.038	1.00
305_S	310_G	1.032	1.00
166_P	169_H	1.031	1.00
359_S	362_H	1.029	1.00
377_L	383_C	1.027	1.00
41_I	230_I	1.022	1.00
164_L	239_S	1.020	1.00
144_L	147_R	1.019	1.00
121_T	124_V	1.017	1.00
63_A	73_R	1.016	1.00
372_G	375_P	1.014	1.00
313_Q	317_I	1.013	1.00
158_V	162_V	1.011	1.00
173_L	177_P	1.011	1.00
122_A	126_L	1.011	1.00
352_P	355_L	1.009	1.00
381_F	385_I	1.008	1.00
270_H	273_L	1.008	1.00
344_L	349_L	1.007	1.00
267_A	271_V	1.006	1.00
210_N	215_R	1.005	1.00
314_T	318_T	1.004	1.00
137_V	309_G	1.003	1.00
75_L	354_L	1.000	1.00
387_V	391_Q	0.999	1.00
333_F	340_A	0.996	1.00
124_V	327_L	0.994	1.00
48_C	52_L	0.991	1.00
53_L	353_S	0.988	1.00
26_L	30_G	0.985	1.00
369_R	377_L	0.982	1.00
209_G	216_W	0.978	1.00
347_L	350_I	0.977	1.00
58_Y	70_L	0.976	1.00
178_L	181_G	0.975	1.00
374_R	377_L	0.973	1.00
368_Y	372_G	0.971	1.00
305_S	309_G	0.970	1.00
171_V	175_T	0.969	1.00
384_G	391_Q	0.966	1.00
244_T	264_E	0.965	1.00
83_T	351_I	0.964	1.00
383_C	386_A	0.964	1.00
355_L	362_H	0.959	1.00
360_R	364_P	0.958	1.00
364_P	367_G	0.957	1.00
327_L	331_R	0.957	1.00
88_M	298_L	0.954	1.00
126_L	130_V	0.952	1.00
170_K	173_L	0.951	1.00
350_I	354_L	0.941	1.00
185_S	189_V	0.939	1.00
49_Y	53_L	0.937	1.00
254_G	257_G	0.933	1.00
347_L	353_S	0.933	1.00
349_L	352_P	0.926	1.00
121_T	125_L	0.924	1.00
130_V	284_A	0.923	1.00
346_V	350_I	0.923	1.00
274_A	278_F	0.917	1.00
56_E	59_Q	0.912	1.00
10_F	147_R	0.910	1.00
208_D	213_K	0.908	1.00
6_L	9_V	0.908	1.00
294_L	319_F	0.907	1.00
356_T	359_S	0.905	1.00
92_Y	96_A	0.903	1.00
372_G	377_L	0.903	1.00
136_C	317_I	0.901	1.00
44_W	194_F	0.898	1.00
122_A	125_L	0.896	1.00
145_F	149_L	0.894	1.00
345_A	348_A	0.893	1.00
96_A	336_A	0.892	1.00
49_Y	379_V	0.890	1.00
129_F	324_A	0.890	1.00
129_F	133_G	0.887	1.00
359_S	363_N	0.886	1.00
147_R	151_S	0.885	1.00
368_Y	374_R	0.881	1.00
326_A	329_Y	0.878	1.00
172_N	175_T	0.868	1.00
53_L	377_L	0.865	1.00
370_V	376_A	0.864	1.00
134_V	145_F	0.863	1.00
388_I	392_F	0.861	1.00
349_L	356_T	0.860	1.00
388_I	391_Q	0.858	1.00
255_L	258_L	0.857	1.00
141_L	144_L	0.856	1.00
356_T	377_L	0.853	1.00
373_G	376_A	0.851	1.00
133_G	136_C	0.848	1.00
139_T	292_L	0.847	1.00
51_A	197_H	0.843	1.00
9_V	217_V	0.842	1.00
146_N	288_L	0.842	1.00
108_S	276_H	0.841	1.00
377_L	384_G	0.840	1.00
88_M	319_F	0.832	1.00
159_V	163_L	0.831	1.00
387_V	390_V	0.830	1.00
167_H	170_K	0.827	1.00
352_P	359_S	0.827	1.00
131_A	288_L	0.817	1.00
103_G	123_G	0.816	1.00
169_H	177_P	0.813	1.00
320_L	324_A	0.807	1.00
60_H	366_A	0.805	1.00
118_M	122_A	0.804	1.00
204_V	214_L	0.803	1.00
102_A	284_A	0.800	1.00
350_I	385_I	0.795	1.00
386_A	389_G	0.794	1.00
321_P	325_F	0.793	1.00
352_P	356_T	0.791	1.00
335_M	338_G	0.789	1.00
263_R	269_P	0.787	1.00
199_S	293_G	0.784	1.00
111_S	117_S	0.780	1.00
344_L	353_S	0.778	1.00
325_F	328_F	0.777	1.00
380_V	391_Q	0.775	1.00
161_L	165_L	0.774	1.00
15_T	289_G	0.770	1.00
163_L	167_H	0.769	1.00
351_I	354_L	0.769	1.00
34_S	183_A	0.768	1.00
128_T	323_L	0.767	1.00
346_V	355_L	0.766	1.00
333_F	341_G	0.765	1.00
182_L	185_S	0.763	1.00
103_G	124_V	0.762	1.00
319_F	322_P	0.762	1.00
316_A	320_L	0.761	1.00
380_V	387_V	0.746	1.00
37_L	41_I	0.743	1.00
269_P	272_E	0.743	1.00
313_Q	316_A	0.742	1.00
68_G	84_G	0.741	1.00
77_R	81_W	0.738	1.00
258_L	262_L	0.737	1.00
43_L	191_F	0.734	1.00
233_Q	237_L	0.734	1.00
102_A	283_L	0.728	1.00
320_L	323_L	0.726	1.00
87_M	91_M	0.726	1.00
13_A	225_P	0.725	1.00
357_W	378_V	0.725	1.00
350_I	353_S	0.722	1.00
334_V	337_L	0.721	1.00
14_G	150_F	0.720	1.00
57_V	70_L	0.720	1.00
312_L	319_F	0.719	1.00
383_C	392_F	0.717	1.00
60_H	364_P	0.716	1.00
357_W	361_K	0.713	1.00
371_K	377_L	0.713	1.00
50_T	197_H	0.713	1.00
389_G	392_F	0.713	1.00
345_A	353_S	0.713	1.00
34_S	38_I	0.711	1.00
369_R	374_R	0.710	1.00
161_L	235_A	0.710	1.00
101_G	105_L	0.710	1.00
359_S	364_P	0.709	1.00
38_I	41_I	0.708	1.00
31_V	35_V	0.706	1.00
56_E	60_H	0.705	1.00
334_V	338_G	0.705	1.00
310_G	314_T	0.703	1.00
363_N	366_A	0.701	1.00
80_Q	84_G	0.700	1.00
348_A	351_I	0.700	1.00
371_K	374_R	0.698	1.00
308_V	315_G	0.697	1.00
79_G	82_L	0.697	1.00
298_L	315_G	0.695	1.00
153_K	282_A	0.695	1.00
317_I	320_L	0.694	1.00
12_V	200_V	0.694	1.00
95_T	291_A	0.693	1.00
50_T	353_S	0.693	1.00
356_T	361_K	0.691	1.00
380_V	386_A	0.690	1.00
65_T	69_T	0.686	1.00
305_S	311_R	0.682	1.00
97_A	192_T	0.681	1.00
102_A	106_L	0.677	1.00
224_I	228_A	0.676	1.00
137_V	141_L	0.674	1.00
173_L	176_L	0.674	1.00
12_V	16_T	0.674	1.00
346_V	352_P	0.673	1.00
370_V	380_V	0.673	1.00
31_V	34_S	0.671	1.00
339_Y	342_V	0.669	1.00
166_P	171_V	0.664	1.00
21_M	232_W	0.663	1.00
68_G	300_D	0.661	1.00
353_S	359_S	0.660	1.00
173_L	238_G	0.658	1.00
38_I	42_G	0.654	1.00
37_L	237_L	0.653	1.00
357_W	360_R	0.653	1.00
11_I	203_I	0.653	1.00
100_S	104_E	0.649	1.00
377_L	391_Q	0.648	1.00
168_I	172_N	0.648	1.00
268_S	271_V	0.648	1.00
337_L	341_G	0.644	1.00
381_F	390_V	0.644	1.00
47_M	197_H	0.642	1.00
143_D	147_R	0.642	1.00
17_I	228_A	0.640	1.00
33_F	237_L	0.635	1.00
33_F	37_L	0.634	1.00
373_G	380_V	0.634	1.00
216_W	219_I	0.633	1.00
198_G	202_S	0.630	1.00
381_F	384_G	0.630	1.00
96_A	99_I	0.629	1.00
48_C	222_S	0.628	1.00
8_S	203_I	0.628	1.00
86_S	90_L	0.628	1.00
355_L	360_R	0.628	1.00
321_P	324_A	0.627	1.00
68_G	72_K	0.627	1.00
349_L	359_S	0.626	1.00
135_V	292_L	0.626	1.00
74_Y	359_S	0.626	1.00
58_Y	201_P	0.625	1.00
307_T	314_T	0.624	1.00
287_F	322_P	0.623	1.00
220_I	223_A	0.622	1.00
147_R	150_F	0.621	1.00
380_V	392_F	0.620	1.00
348_A	355_L	0.620	1.00
98_Y	287_F	0.619	1.00
95_T	287_F	0.617	1.00
17_I	20_G	0.617	1.00
70_L	201_P	0.617	1.00
9_V	12_V	0.615	1.00
337_L	340_A	0.615	1.00
95_T	323_L	0.615	1.00
362_H	366_A	0.615	1.00
296_D	299_A	0.612	1.00
347_L	354_L	0.611	1.00
338_G	341_G	0.610	1.00
108_S	111_S	0.609	1.00
267_A	270_H	0.608	1.00
291_A	294_L	0.607	1.00
387_V	392_F	0.606	1.00
349_L	362_H	0.605	1.00
235_A	238_G	0.605	1.00
140_S	143_D	0.605	1.00
273_L	276_H	0.604	1.00
168_I	173_L	0.603	1.00
335_M	339_Y	0.602	1.00
172_N	177_P	0.601	1.00
127_F	131_A	0.601	1.00
312_L	326_A	0.599	1.00
376_A	383_C	0.594	1.00
78_Y	81_W	0.591	1.00
98_Y	101_G	0.590	1.00
373_G	378_V	0.586	1.00
345_A	349_L	0.586	1.00
179_Q	182_L	0.586	1.00
55_L	59_Q	0.585	1.00
49_Y	376_A	0.584	1.00
344_L	358_Q	0.584	1.00
11_I	14_G	0.584	1.00
349_L	358_Q	0.582	1.00
259_L	263_R	0.582	1.00
287_F	290_V	0.582	1.00
306_N	314_T	0.580	1.00
307_T	313_Q	0.578	1.00
347_L	359_S	0.578	1.00
296_D	302_F	0.577	1.00
360_R	363_N	0.574	1.00
107_A	120_A	0.573	1.00
348_A	353_S	0.572	1.00
207_M	217_V	0.571	1.00
291_A	295_F	0.571	1.00
319_F	323_L	0.570	1.00
184_L	188_P	0.566	1.00
268_S	272_E	0.566	1.00
82_L	86_S	0.565	1.00
346_V	359_S	0.561	1.00
64_D	299_A	0.559	1.00
350_I	384_G	0.559	1.00
132_G	317_I	0.559	1.00
141_L	145_F	0.554	1.00
344_L	357_W	0.554	1.00
150_F	153_K	0.554	1.00
130_V	133_G	0.550	1.00
207_M	214_L	0.549	1.00
58_Y	214_L	0.548	1.00
232_W	236_T	0.547	1.00
163_L	166_P	0.546	1.00
94_L	98_Y	0.546	1.00
371_K	376_A	0.545	1.00
154_I	228_A	0.544	1.00
77_R	80_Q	0.544	1.00
91_M	290_V	0.544	1.00
312_L	330_P	0.543	1.00
57_V	74_Y	0.542	1.00
383_C	391_Q	0.542	1.00
52_L	56_E	0.541	1.00
61_V	74_Y	0.540	1.00
351_I	358_Q	0.539	1.00
311_R	316_A	0.538	1.00
337_L	342_V	0.538	1.00
25_P	29_A	0.538	1.00
23_A	101_G	0.538	1.00
315_G	318_T	0.538	1.00
92_Y	322_P	0.536	1.00
368_Y	373_G	0.535	1.00
88_M	92_Y	0.535	1.00
132_G	291_A	0.532	1.00
322_P	326_A	0.530	1.00
71_A	355_L	0.530	1.00
99_I	102_A	0.530	1.00
381_F	388_I	0.528	1.00
294_L	298_L	0.525	1.00
168_I	235_A	0.524	1.00
348_A	356_T	0.524	1.00
304_R	313_Q	0.521	1.00
215_R	218_F	0.521	1.00
220_I	224_I	0.521	1.00
6_L	144_L	0.521	1.00
68_G	80_Q	0.520	1.00
41_I	226_L	0.520	1.00
106_L	127_F	0.518	1.00
142_V	146_N	0.518	1.00
350_I	357_W	0.517	1.00
43_L	46_L	0.516	1.00
106_L	280_D	0.516	1.00
47_M	50_T	0.515	1.00
209_G	215_R	0.515	1.00
354_L	381_F	0.514	1.00
107_A	123_G	0.513	1.00
41_I	45_A	0.512	1.00
40_L	233_Q	0.512	1.00
345_A	355_L	0.512	1.00
344_L	359_S	0.510	1.00
312_L	317_I	0.510	1.00
224_I	227_V	0.509	1.00
71_A	80_Q	0.509	1.00
205_S	299_A	0.508	1.00
87_M	90_L	0.508	1.00
242_S	246_M	0.508	1.00
246_M	253_A	0.506	1.00
354_L	357_W	0.505	1.00
224_I	231_F	0.503	1.00
39_L	183_A	0.503	1.00
27_A	30_G	0.503	1.00
165_L	231_F	0.502	1.00
170_K	174_L	0.502	1.00
117_S	120_A	0.501	1.00
146_N	153_K	0.501	1.00
263_R	266_V	0.500	1.00
71_A	351_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9429	100	0.356	Contact Map
3giaA	1	0.9578	100	0.404	Contact Map
4djkA	2	0.9578	100	0.437	Contact Map
2jlnA	1	0.9504	98.4	0.829	Contact Map
4wgvA	2	0.8958	98.4	0.833	Contact Map
3dh4A	3	0.9256	98.2	0.84	Contact Map
2xq2A	2	0.928	98	0.848	Contact Map
4xp4A	1	0.9702	96.7	0.88	Contact Map
2a65A	2	0.9777	96.3	0.884	Contact Map
4us3A	1	0.9404	96.2	0.886	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0123 seconds.