MTR - ECOLI - GREMLIN Contacts

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MTR - Tryptophan-specific transport protein

UniProt:	P0AAD2	Sequences: MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIALILVFGVGNALVHILSSFNLLPVYQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10617
Length:	414 (379)
Sequences:	26894 (17948)
Seq/√Len:	921.9

ECOLI - MTR TNAB TYRP POTE PROY AROP YBAT GABP FRLA PHEP YIFK ANSP ADIC LYSP MMUP PUUP GADC PLAP CYCA YCAM YJEM YGJI CADB YJEH ARCD
BACSU - ASPP STET ROCC YVBW YTNA YBXG AAPA YBGF HUTM GABP YBEC YHDG YDGF YFNA ROCE YECA YNDE ARCD YCGH GERKB GERAB GERBB YDAO YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q7LXI7 Q97XM0 Q97ZB5 Q97WS3 Q97X49 Q97VA6 Q97Y76 Q97U33 Q97Z63 Q97WD4 Q97VA8 Q97VR4 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
323_L	326_A	4.340	1.00
322_R	325_T	3.691	1.00
322_R	326_A	3.477	1.00
369_A	373_R	3.156	1.00
314_G	317_D	3.072	1.00
391_I	395_G	2.951	1.00
12_S	219_G	2.900	1.00
52_W	237_L	2.848	1.00
317_D	321_G	2.843	1.00
317_D	320_V	2.828	1.00
220_K	223_K	2.690	1.00
80_K	88_N	2.517	1.00
218_Y	224_T	2.506	1.00
17_V	231_Y	2.494	1.00
223_K	227_K	2.476	1.00
360_A	366_L	2.425	1.00
319_A	322_R	2.385	1.00
92_G	312_L	2.369	1.00
281_S	285_L	2.334	1.00
13_L	231_Y	2.323	1.00
217_Y	307_D	2.319	1.00
171_L	246_A	2.294	1.00
169_G	173_G	2.291	1.00
271_Q	274_S	2.235	1.00
318_S	321_G	2.223	1.00
12_S	15_G	2.221	1.00
16_G	218_Y	2.216	1.00
323_L	327_L	2.207	1.00
13_L	17_V	2.196	1.00
13_L	224_T	2.194	1.00
389_A	393_V	2.151	1.00
17_V	235_M	2.122	1.00
344_F	348_I	2.112	1.00
140_F	144_L	2.107	1.00
220_K	224_T	2.098	1.00
324_K	327_L	2.095	1.00
227_K	231_Y	2.080	1.00
269_L	272_A	2.060	1.00
80_K	85_K	2.051	1.00
366_L	370_S	2.006	1.00
322_R	333_P	1.997	1.00
269_L	274_S	1.990	1.00
322_R	327_L	1.980	1.00
369_A	372_K	1.951	1.00
319_A	323_L	1.944	1.00
20_I	232_G	1.896	1.00
385_K	389_A	1.888	1.00
147_K	151_R	1.846	1.00
323_L	334_V	1.821	1.00
379_F	382_W	1.810	1.00
252_P	255_E	1.783	1.00
230_V	234_L	1.779	1.00
361_I	392_L	1.768	1.00
322_R	330_F	1.723	1.00
367_A	371_R	1.702	1.00
83_L	369_A	1.702	1.00
158_G	162_I	1.701	1.00
83_L	87_W	1.684	1.00
314_G	318_S	1.674	1.00
344_F	351_A	1.672	1.00
24_I	236_A	1.656	1.00
393_V	397_G	1.651	1.00
323_L	330_F	1.642	1.00
234_L	238_A	1.626	1.00
386_P	390_L	1.620	1.00
21_G	235_M	1.614	1.00
11_P	15_G	1.612	1.00
79_T	91_N	1.610	1.00
53_F	57_H	1.601	1.00
314_G	319_A	1.590	1.00
224_T	227_K	1.581	1.00
175_V	249_G	1.577	1.00
34_V	37_S	1.567	1.00
324_K	328_L	1.563	1.00
84_G	87_W	1.553	1.00
322_R	329_T	1.546	1.00
162_I	166_L	1.540	1.00
388_I	391_I	1.538	1.00
397_G	401_V	1.537	1.00
362_V	366_L	1.535	1.00
110_S	291_N	1.534	1.00
15_G	150_S	1.515	1.00
132_F	136_L	1.514	1.00
51_T	201_C	1.508	1.00
383_G	387_M	1.489	1.00
47_A	197_T	1.488	1.00
15_G	154_A	1.480	1.00
323_L	333_P	1.452	1.00
126_P	129_A	1.441	1.00
358_W	366_L	1.434	1.00
320_V	323_L	1.421	1.00
237_L	241_T	1.421	1.00
360_A	364_A	1.417	1.00
16_G	228_C	1.374	1.00
180_L	184_A	1.371	1.00
384_G	388_I	1.358	1.00
388_I	392_L	1.357	1.00
327_L	331_A	1.353	1.00
360_A	363_P	1.351	1.00
161_V	165_F	1.347	1.00
11_P	16_G	1.340	1.00
168_F	242_I	1.340	1.00
323_L	331_A	1.335	1.00
255_E	276_V	1.334	1.00
322_R	331_A	1.332	1.00
364_A	391_I	1.331	1.00
357_I	360_A	1.329	1.00
172_L	176_Q	1.315	1.00
114_L	130_A	1.314	1.00
389_A	392_L	1.309	1.00
358_W	362_V	1.303	1.00
371_R	375_G	1.301	1.00
181_F	184_A	1.296	1.00
60_L	230_V	1.292	1.00
325_T	328_L	1.289	1.00
388_I	395_G	1.287	1.00
72_G	216_K	1.284	1.00
13_L	227_K	1.284	1.00
370_S	373_R	1.276	1.00
83_L	365_L	1.274	1.00
327_L	330_F	1.271	1.00
326_A	329_T	1.271	1.00
69_Y	81_D	1.264	1.00
64_E	371_R	1.261	1.00
107_I	135_A	1.257	1.00
284_L	288_V	1.219	1.00
45_M	245_L	1.218	1.00
142_V	299_L	1.213	1.00
267_D	271_Q	1.211	1.00
317_D	322_R	1.210	1.00
317_D	323_L	1.208	1.00
355_A	358_W	1.207	1.00
14_L	18_V	1.207	1.00
110_S	134_F	1.207	1.00
390_L	394_F	1.206	1.00
71_I	81_D	1.192	1.00
165_F	169_G	1.192	1.00
328_L	332_P	1.191	1.00
177_P	180_L	1.173	1.00
214_L	303_L	1.169	1.00
372_K	375_G	1.162	1.00
391_I	394_F	1.158	1.00
89_V	93_I	1.156	1.00
326_A	330_F	1.153	1.00
381_V	384_G	1.148	1.00
321_G	324_K	1.147	1.00
221_D	226_V	1.144	1.00
355_A	359_A	1.143	1.00
107_I	298_F	1.142	1.00
323_L	328_L	1.138	1.00
318_S	322_R	1.137	1.00
53_F	390_L	1.136	1.00
156_V	296_S	1.132	1.00
13_L	228_C	1.130	1.00
178_A	181_F	1.129	1.00
62_I	75_F	1.126	1.00
187_N	190_Y	1.122	1.00
387_M	391_I	1.120	1.00
56_L	230_V	1.117	1.00
314_G	321_G	1.117	1.00
395_G	398_N	1.113	1.00
338_L	341_P	1.111	1.00
270_V	273_L	1.110	1.00
172_L	246_A	1.109	1.00
366_L	373_R	1.095	1.00
322_R	332_P	1.094	1.00
365_L	369_A	1.092	1.00
56_L	60_L	1.091	1.00
220_K	227_K	1.085	1.00
266_I	269_L	1.084	1.00
392_L	395_G	1.079	1.00
238_A	242_I	1.070	1.00
360_A	370_S	1.066	1.00
392_L	396_V	1.063	1.00
396_V	400_L	1.059	1.00
370_S	375_G	1.058	1.00
153_T	299_L	1.052	1.00
171_L	250_N	1.049	1.00
163_T	289_F	1.045	1.00
128_R	132_F	1.043	1.00
106_Y	297_S	1.042	1.00
364_A	367_A	1.040	1.00
133_G	137_L	1.039	1.00
360_A	369_A	1.036	1.00
42_F	194_L	1.036	1.00
355_A	366_L	1.036	1.00
136_L	140_F	1.035	1.00
366_L	369_A	1.024	1.00
359_A	363_P	1.023	1.00
357_I	366_L	1.018	1.00
179_T	184_A	1.016	1.00
355_A	360_A	1.016	1.00
334_V	338_L	1.013	1.00
322_R	334_V	1.013	1.00
139_A	331_A	1.004	1.00
360_A	367_A	1.003	1.00
323_L	341_P	1.003	1.00
363_P	366_L	1.000	1.00
357_I	364_A	0.997	1.00
139_A	143_W	0.997	1.00
179_T	183_V	0.995	1.00
125_V	129_A	0.994	1.00
52_W	205_F	0.994	1.00
167_T	171_L	0.988	1.00
140_F	143_W	0.981	1.00
394_F	398_N	0.978	1.00
280_R	284_L	0.977	1.00
86_G	90_V	0.974	1.00
79_T	87_W	0.972	1.00
314_G	320_V	0.970	1.00
177_P	181_F	0.969	1.00
128_R	131_G	0.968	1.00
386_P	389_A	0.964	1.00
10_S	219_G	0.962	1.00
335_V	339_L	0.959	1.00
326_A	334_V	0.955	1.00
25_I	28_G	0.955	1.00
385_K	392_L	0.954	1.00
77_T	81_D	0.954	1.00
68_N	377_P	0.948	1.00
221_D	224_T	0.945	1.00
58_S	208_H	0.929	1.00
66_N	78_I	0.926	1.00
379_F	385_K	0.919	1.00
152_M	156_V	0.916	1.00
190_Y	193_Y	0.915	1.00
346_Y	349_G	0.911	1.00
385_K	388_I	0.907	1.00
129_A	133_G	0.906	1.00
96_A	309_L	0.905	1.00
270_V	274_S	0.904	1.00
381_V	388_I	0.904	1.00
17_V	228_C	0.903	1.00
71_I	77_T	0.900	1.00
334_V	337_G	0.897	1.00
59_G	233_T	0.896	1.00
49_I	241_T	0.895	1.00
318_S	323_L	0.894	1.00
355_A	362_V	0.894	1.00
330_F	334_V	0.893	1.00
354_A	357_I	0.891	1.00
357_I	362_V	0.884	1.00
132_F	338_L	0.884	1.00
325_T	333_P	0.878	1.00
191_A	195_L	0.878	1.00
40_W	43_W	0.875	1.00
136_L	139_A	0.873	1.00
18_V	154_A	0.870	1.00
61_M	364_A	0.867	1.00
380_R	384_G	0.865	1.00
11_P	150_S	0.861	1.00
337_G	341_P	0.859	1.00
59_G	229_L	0.858	1.00
168_F	246_A	0.858	1.00
57_H	61_M	0.855	1.00
367_A	370_S	0.854	1.00
34_V	38_G	0.852	1.00
185_E	188_A	0.852	1.00
380_R	385_K	0.850	1.00
383_G	388_I	0.849	1.00
362_V	369_A	0.848	1.00
399_A	403_I	0.848	1.00
357_I	361_I	0.847	1.00
166_L	170_S	0.845	1.00
219_G	224_T	0.844	1.00
326_A	333_P	0.843	1.00
395_G	399_A	0.843	1.00
26_G	240_Y	0.843	1.00
54_C	394_F	0.842	1.00
323_L	329_T	0.837	1.00
384_G	387_M	0.835	1.00
364_A	368_R	0.835	1.00
337_G	340_F	0.833	1.00
42_F	187_N	0.833	1.00
20_I	211_V	0.832	1.00
146_T	303_L	0.831	1.00
115_H	119_A	0.830	1.00
381_V	385_K	0.826	1.00
366_L	371_R	0.826	1.00
278_N	282_L	0.824	1.00
104_Y	347_A	0.824	1.00
269_L	273_L	0.821	1.00
191_A	194_L	0.819	1.00
325_T	329_T	0.819	1.00
178_A	182_N	0.819	1.00
160_K	293_A	0.816	1.00
367_A	388_I	0.816	1.00
335_V	338_L	0.812	1.00
358_W	364_A	0.810	1.00
323_L	336_G	0.808	1.00
360_A	373_R	0.804	1.00
32_L	244_L	0.801	1.00
365_L	392_L	0.799	1.00
91_N	362_V	0.798	1.00
324_K	331_A	0.794	1.00
267_D	270_V	0.791	1.00
326_A	337_G	0.789	1.00
25_I	239_L	0.786	1.00
398_N	401_V	0.784	1.00
345_L	348_I	0.782	1.00
324_K	335_V	0.779	1.00
111_G	131_G	0.778	1.00
330_F	333_P	0.775	1.00
267_D	272_A	0.774	1.00
333_P	337_G	0.772	1.00
64_E	67_L	0.770	1.00
363_P	370_S	0.770	1.00
370_S	374_F	0.768	1.00
19_I	214_L	0.766	1.00
320_V	324_K	0.765	1.00
130_A	133_G	0.764	1.00
116_H	287_V	0.760	1.00
358_W	361_I	0.759	1.00
324_K	329_T	0.759	1.00
382_W	385_K	0.759	1.00
141_V	152_M	0.757	1.00
383_G	386_P	0.753	1.00
46_A	50_F	0.751	1.00
361_I	396_V	0.751	1.00
76_D	88_N	0.750	1.00
45_M	49_I	0.750	1.00
369_A	374_F	0.749	1.00
150_S	154_A	0.748	1.00
328_L	331_A	0.746	1.00
109_A	113_I	0.746	1.00
398_N	402_H	0.745	1.00
95_I	99_L	0.743	1.00
324_K	330_F	0.742	1.00
67_L	378_K	0.741	1.00
108_S	347_A	0.739	1.00
322_R	338_L	0.738	1.00
100_Y	104_Y	0.738	1.00
317_D	324_K	0.736	1.00
23_T	300_G	0.735	1.00
14_L	17_V	0.734	1.00
324_K	334_V	0.733	1.00
381_V	387_M	0.733	1.00
127_A	131_G	0.732	1.00
252_P	276_V	0.729	1.00
325_T	332_P	0.729	1.00
279_S	282_L	0.726	1.00
65_A	78_I	0.726	1.00
66_N	212_P	0.726	1.00
61_M	388_I	0.726	1.00
111_G	130_A	0.724	1.00
76_D	311_D	0.724	1.00
179_T	182_N	0.721	1.00
319_A	324_K	0.721	1.00
358_W	365_L	0.721	1.00
377_P	380_R	0.720	1.00
346_Y	350_Y	0.719	1.00
180_L	183_V	0.719	1.00
195_L	397_G	0.716	1.00
161_V	239_L	0.709	1.00
45_M	248_M	0.708	1.00
357_I	363_P	0.708	1.00
21_G	236_A	0.705	1.00
176_Q	179_T	0.703	1.00
87_W	90_V	0.703	1.00
373_R	377_P	0.703	1.00
245_L	249_G	0.702	1.00
173_G	176_Q	0.702	1.00
220_K	226_V	0.697	1.00
393_V	396_V	0.696	1.00
368_R	389_A	0.695	1.00
364_A	370_S	0.694	1.00
314_G	322_R	0.691	1.00
138_V	298_F	0.690	1.00
363_P	367_A	0.688	1.00
376_S	379_F	0.688	1.00
356_T	360_A	0.688	1.00
168_F	172_L	0.686	1.00
148_A	151_R	0.685	1.00
177_P	183_V	0.684	1.00
106_Y	298_F	0.681	1.00
114_L	118_F	0.681	1.00
151_R	155_I	0.680	1.00
364_A	371_R	0.680	1.00
76_D	92_G	0.679	1.00
368_R	372_K	0.677	1.00
327_L	334_V	0.676	1.00
154_A	158_G	0.675	1.00
322_R	335_V	0.673	1.00
103_T	302_T	0.670	1.00
124_N	127_A	0.669	1.00
176_Q	180_L	0.668	1.00
180_L	249_G	0.667	1.00
319_A	327_L	0.665	1.00
101_I	104_Y	0.665	1.00
369_A	375_G	0.664	1.00
29_M	243_W	0.664	1.00
346_Y	351_A	0.663	1.00
82_L	370_S	0.662	1.00
231_Y	235_M	0.662	1.00
336_G	340_F	0.661	1.00
22_G	157_L	0.661	1.00
49_I	53_F	0.660	1.00
217_Y	310_A	0.659	1.00
115_H	127_A	0.659	1.00
216_K	310_A	0.658	1.00
380_R	383_G	0.658	1.00
281_S	284_L	0.658	1.00
244_L	248_M	0.658	1.00
210_N	304_G	0.656	1.00
342_N	345_L	0.655	1.00
321_G	325_T	0.655	1.00
314_G	323_L	0.653	1.00
10_S	146_T	0.653	1.00
64_E	68_N	0.653	1.00
322_R	328_L	0.651	1.00
58_S	364_A	0.650	1.00
14_L	151_R	0.650	1.00
285_L	289_F	0.648	1.00
367_A	372_K	0.646	1.00
323_L	337_G	0.645	1.00
21_G	25_I	0.645	1.00
215_M	225_I	0.644	1.00
51_T	202_L	0.643	1.00
366_L	375_G	0.643	1.00
57_H	390_L	0.643	1.00
27_A	106_Y	0.642	1.00
356_T	359_A	0.642	1.00
362_V	365_L	0.640	1.00
348_I	352_G	0.638	1.00
68_N	375_G	0.638	1.00
186_S	190_Y	0.637	1.00
356_T	366_L	0.637	1.00
177_P	182_N	0.636	1.00
153_T	160_K	0.634	1.00
361_I	368_R	0.634	1.00
344_F	350_Y	0.633	1.00
209_G	213_S	0.632	1.00
400_L	403_I	0.631	1.00
355_A	369_A	0.630	1.00
391_I	397_G	0.629	1.00
35_V	39_A	0.628	1.00
319_A	325_T	0.628	1.00
180_L	248_M	0.625	1.00
329_T	333_P	0.625	1.00
274_S	283_D	0.623	1.00
178_A	183_V	0.623	1.00
151_R	154_A	0.622	1.00
175_V	246_A	0.622	1.00
394_F	397_G	0.621	1.00
344_F	349_G	0.621	1.00
246_A	249_G	0.619	1.00
336_G	339_L	0.618	1.00
321_G	326_A	0.617	1.00
138_V	299_L	0.617	1.00
55_M	58_S	0.616	1.00
356_T	364_A	0.614	1.00
178_A	184_A	0.614	1.00
57_H	387_M	0.612	1.00
39_A	42_F	0.612	1.00
105_A	203_A	0.608	1.00
397_G	400_L	0.607	1.00
322_R	337_G	0.607	1.00
298_F	333_P	0.605	1.00
139_A	327_L	0.605	1.00
100_Y	332_P	0.602	1.00
280_R	283_D	0.601	1.00
108_S	112_S	0.599	1.00
157_L	160_K	0.598	1.00
25_I	160_K	0.596	1.00
16_G	214_L	0.592	1.00
382_W	386_P	0.592	1.00
383_G	389_A	0.591	1.00
127_A	132_F	0.590	1.00
395_G	402_H	0.588	1.00
129_A	132_F	0.588	1.00
231_Y	234_L	0.587	1.00
86_G	89_V	0.587	1.00
235_M	239_L	0.587	1.00
35_V	38_G	0.586	1.00
46_A	194_L	0.585	1.00
368_R	373_R	0.581	1.00
117_T	291_N	0.580	1.00
382_W	388_I	0.579	1.00
10_S	14_L	0.578	1.00
41_F	45_M	0.578	1.00
361_I	365_L	0.578	1.00
354_A	366_L	0.577	1.00
348_I	351_A	0.576	1.00
226_V	229_L	0.576	1.00
196_M	200_F	0.575	1.00
376_S	380_R	0.575	1.00
365_L	368_R	0.573	1.00
56_L	233_T	0.571	1.00
79_T	362_V	0.571	1.00
193_Y	196_M	0.570	1.00
55_M	208_H	0.570	1.00
59_G	208_H	0.568	1.00
73_S	77_T	0.568	1.00
307_D	310_A	0.564	1.00
15_G	151_R	0.564	1.00
60_L	64_E	0.563	1.00
113_I	290_S	0.563	1.00
319_A	326_A	0.561	1.00
23_T	210_N	0.560	1.00
347_A	351_A	0.560	1.00
27_A	203_A	0.558	1.00
102_L	105_A	0.558	1.00
35_V	43_W	0.556	1.00
96_A	100_Y	0.555	1.00
398_N	403_I	0.553	1.00
79_T	88_N	0.553	1.00
302_T	306_F	0.552	1.00
327_L	337_G	0.552	1.00
399_A	402_H	0.552	1.00
134_F	138_V	0.549	1.00
364_A	392_L	0.547	1.00
361_I	364_A	0.547	1.00
36_M	40_W	0.546	1.00
255_E	258_G	0.545	1.00
329_T	332_P	0.545	1.00
323_L	332_P	0.544	1.00
76_D	80_K	0.543	1.00
206_G	209_G	0.542	1.00
85_K	88_N	0.542	1.00
39_A	43_W	0.541	1.00
357_I	370_S	0.537	1.00
334_V	339_L	0.537	1.00
132_F	142_V	0.536	1.00
110_S	294_V	0.535	1.00
68_N	378_K	0.535	1.00
359_A	366_L	0.534	1.00
323_L	339_L	0.533	1.00
331_A	335_V	0.533	1.00
345_L	349_G	0.532	1.00
358_W	370_S	0.530	1.00
10_S	147_K	0.529	1.00
149_V	153_T	0.528	1.00
204_S	240_Y	0.526	1.00
359_A	367_A	0.526	1.00
137_L	140_F	0.526	1.00
106_Y	109_A	0.525	1.00
242_I	246_A	0.525	1.00
78_I	212_P	0.524	1.00
159_A	163_T	0.524	1.00
148_A	152_M	0.523	1.00
88_N	92_G	0.523	1.00
65_A	82_L	0.522	1.00
253_R	256_F	0.521	1.00
266_I	270_V	0.521	1.00
103_T	298_F	0.521	1.00
195_L	199_P	0.520	1.00
359_A	362_V	0.520	1.00
139_A	330_F	0.519	1.00
355_A	370_S	0.518	1.00
85_K	89_V	0.518	1.00
391_I	399_A	0.518	1.00
23_T	301_V	0.516	1.00
162_I	165_F	0.515	1.00
107_I	110_S	0.515	1.00
133_G	136_L	0.514	1.00
172_L	242_I	0.510	1.00
327_L	339_L	0.507	1.00
104_Y	107_I	0.506	1.00
35_V	40_W	0.506	1.00
144_L	148_A	0.505	1.00
170_S	279_S	0.504	1.00
381_V	391_I	0.503	1.00
48_L	244_L	0.503	1.00
170_S	174_H	0.502	1.00
271_Q	276_V	0.502	1.00
364_A	369_A	0.501	1.00
218_Y	228_C	0.501	1.00
118_F	124_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9324	100	0.354	Contact Map
3giaA	1	0.942	100	0.409	Contact Map
4djkA	2	0.9203	100	0.445	Contact Map
2jlnA	1	0.9589	99.1	0.794	Contact Map
4wgvA	2	0.8889	98.6	0.822	Contact Map
3dh4A	3	0.9155	98.5	0.83	Contact Map
2xq2A	2	0.9155	98.4	0.836	Contact Map
4us3A	1	0.93	98.3	0.84	Contact Map
2a65A	2	0.9638	98	0.851	Contact Map
4xp4A	1	0.9614	97.8	0.858	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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