FUCO - ECOLI - GREMLIN Contacts

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FUCO - Lactaldehyde reductase

UniProt:	P0A9S1	Sequences: MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10351
Length:	382 (364)
Sequences:	10577 (7305)
Seq/√Len:	382.9

ECOLI - FUCO ADHE EUTG ADH2 YQHD GLDA YBDH
BACSU - GBSB YUGK YUGJ G1PDH
HALSA - Q9HNB5 Q9HHR2 G1PDH
SULSO - Q97VW4 G1PDH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
354_Q	371_L	3.917	1.00
350_P	375_V	3.833	1.00
229_R	332_D	3.648	1.00
81_G	85_N	3.166	1.00
346_K	379_H	3.147	1.00
289_R	327_F	3.100	1.00
74_T	156_E	2.860	1.00
230_G	235_D	2.835	1.00
79_G	106_I	2.745	1.00
370_T	373_D	2.618	1.00
227_A	241_E	2.611	1.00
48_A	52_D	2.553	1.00
15_R	179_D	2.540	1.00
182_D	236_K	2.533	1.00
32_K	60_A	2.502	1.00
349_I	375_V	2.410	1.00
345_R	348_D	2.369	1.00
20_A	23_D	2.340	1.00
66_G	78_E	2.325	1.00
264_M	378_Y	2.322	1.00
219_K	222_E	2.254	1.00
338_H	341_D	2.243	1.00
375_V	379_H	2.242	1.00
33_A	90_Y	2.211	1.00
200_A	220_A	2.174	1.00
17_A	20_A	2.156	1.00
328_A	332_D	2.144	1.00
16_G	179_D	2.055	1.00
176_I	243_A	2.025	1.00
214_D	298_K	2.012	1.00
83_F	132_V	1.989	1.00
40_T	44_C	1.955	1.00
100_Q	136_A	1.948	1.00
189_K	239_G	1.946	1.00
371_L	375_V	1.941	1.00
51_T	55_D	1.931	1.00
91_L	103_C	1.918	1.00
62_A	86_S	1.885	1.00
196_A	224_I	1.864	1.00
197_L	221_I	1.859	1.00
353_A	375_V	1.855	1.00
225_A	306_M	1.844	1.00
376_E	380_T	1.831	1.00
191_A	278_V	1.815	1.00
83_F	110_S	1.780	1.00
48_A	51_T	1.775	1.00
325_A	328_A	1.759	1.00
291_N	365_N	1.753	1.00
265_A	279_A	1.745	1.00
352_L	378_Y	1.739	1.00
353_A	371_L	1.731	1.00
289_R	380_T	1.724	1.00
68_V	75_V	1.709	1.00
42_V	65_D	1.703	1.00
229_R	233_A	1.683	1.00
75_V	78_E	1.673	1.00
350_P	371_L	1.673	1.00
303_A	322_A	1.633	1.00
282_I	342_V	1.628	1.00
15_R	236_K	1.624	1.00
19_G	49_K	1.617	1.00
233_A	332_D	1.617	1.00
116_A	121_L	1.610	1.00
55_D	61_W	1.601	1.00
186_P	190_A	1.601	1.00
78_E	81_G	1.598	1.00
331_R	337_P	1.595	1.00
62_A	82_V	1.595	1.00
237_D	241_E	1.575	1.00
187_A	278_V	1.573	1.00
31_Q	89_D	1.563	1.00
22_T	53_K	1.558	1.00
82_V	86_S	1.555	1.00
93_A	134_I	1.542	1.00
235_D	238_A	1.535	1.00
221_I	302_I	1.522	1.00
271_F	351_A	1.509	1.00
181_M	239_G	1.504	1.00
52_D	56_A	1.494	1.00
77_K	117_D	1.492	1.00
230_G	234_G	1.492	1.00
62_A	88_A	1.491	1.00
193_G	228_L	1.491	1.00
93_A	103_C	1.479	1.00
116_A	120_S	1.479	1.00
324_E	328_A	1.469	1.00
376_E	379_H	1.463	1.00
288_M	326_V	1.455	1.00
10_T	24_E	1.453	1.00
32_K	62_A	1.453	1.00
25_V	90_Y	1.451	1.00
15_R	240_E	1.432	1.00
351_A	355_A	1.432	1.00
292_A	320_N	1.417	1.00
348_D	351_A	1.416	1.00
24_E	27_R	1.410	1.00
33_A	92_I	1.407	1.00
51_T	61_W	1.397	1.00
76_V	153_I	1.384	1.00
82_V	85_N	1.381	1.00
218_I	301_D	1.380	1.00
111_N	130_P	1.380	1.00
179_D	236_K	1.374	1.00
80_L	109_I	1.373	1.00
73_I	77_K	1.363	1.00
264_M	283_L	1.363	1.00
36_V	106_I	1.347	1.00
274_T	279_A	1.340	1.00
227_A	230_G	1.328	1.00
289_R	320_N	1.321	1.00
354_Q	358_D	1.314	1.00
181_M	243_A	1.308	1.00
12_W	24_E	1.306	1.00
193_G	242_M	1.300	1.00
24_E	173_V	1.297	1.00
186_P	232_V	1.296	1.00
194_V	330_N	1.292	1.00
112_N	116_A	1.291	1.00
83_F	88_A	1.284	1.00
107_G	131_S	1.281	1.00
76_V	102_T	1.272	1.00
135_L	173_V	1.267	1.00
218_I	222_E	1.262	1.00
91_L	107_G	1.261	1.00
49_K	179_D	1.261	1.00
373_D	376_E	1.241	1.00
36_V	103_C	1.236	1.00
179_D	182_D	1.232	1.00
77_K	81_G	1.226	1.00
90_Y	135_L	1.223	1.00
320_N	324_E	1.222	1.00
226_G	241_E	1.221	1.00
36_V	67_V	1.216	1.00
68_V	72_T	1.213	1.00
11_A	247_Y	1.205	1.00
301_D	304_R	1.203	1.00
372_E	375_V	1.203	1.00
81_G	84_Q	1.201	1.00
34_L	82_V	1.201	1.00
290_Y	373_D	1.200	1.00
194_V	335_I	1.193	1.00
349_I	379_H	1.193	1.00
227_A	238_A	1.186	1.00
189_K	231_S	1.182	1.00
218_I	305_V	1.173	1.00
103_C	134_I	1.172	1.00
12_W	20_A	1.155	1.00
224_I	242_M	1.155	1.00
40_T	43_Q	1.150	1.00
18_V	137_I	1.145	1.00
351_A	354_Q	1.145	1.00
286_H	380_T	1.145	1.00
83_F	106_I	1.145	1.00
260_L	369_A	1.142	1.00
155_D	158_K	1.137	1.00
141_A	189_K	1.125	1.00
300_R	318_A	1.125	1.00
52_D	55_D	1.124	1.00
357_L	371_L	1.119	1.00
80_L	84_Q	1.112	1.00
34_L	83_F	1.111	1.00
17_A	175_F	1.105	1.00
215_A	219_K	1.103	1.00
21_L	50_V	1.100	1.00
321_A	324_E	1.099	1.00
184_M	188_L	1.098	1.00
15_R	182_D	1.097	1.00
32_K	86_S	1.089	1.00
50_V	94_I	1.089	1.00
302_I	322_A	1.083	1.00
18_V	49_K	1.082	1.00
35_I	61_W	1.081	1.00
219_K	223_I	1.079	1.00
34_L	88_A	1.079	1.00
203_G	252_G	1.079	1.00
372_E	376_E	1.073	1.00
178_A	240_E	1.069	1.00
26_K	57_A	1.069	1.00
147_V	247_Y	1.062	1.00
14_G	17_A	1.058	1.00
42_V	47_V	1.057	1.00
39_K	66_G	1.053	1.00
72_T	75_V	1.050	1.00
150_N	165_V	1.041	1.00
32_K	87_G	1.041	1.00
261_V	284_L	1.040	1.00
39_K	65_D	1.037	1.00
74_T	157_E	1.034	1.00
264_M	374_I	1.030	1.00
293_D	367_R	1.029	1.00
230_G	237_D	1.026	1.00
292_A	319_R	1.025	1.00
16_G	19_G	1.021	1.00
261_V	280_N	1.019	1.00
25_V	135_L	1.017	1.00
133_P	172_Q	1.005	1.00
271_F	355_A	1.000	1.00
38_D	41_L	0.991	1.00
190_A	232_V	0.988	1.00
35_I	47_V	0.985	1.00
263_G	362_T	0.984	1.00
200_A	249_A	0.983	1.00
300_R	319_R	0.979	1.00
186_P	233_A	0.977	1.00
37_T	65_D	0.968	1.00
23_D	57_A	0.963	1.00
42_V	48_A	0.963	1.00
225_A	325_A	0.961	1.00
55_D	60_A	0.957	1.00
73_I	156_E	0.952	1.00
350_P	354_Q	0.951	1.00
194_V	281_A	0.949	1.00
204_Y	301_D	0.949	1.00
304_R	318_A	0.942	1.00
191_A	275_P	0.935	1.00
294_F	367_R	0.932	1.00
117_D	120_S	0.931	1.00
147_V	174_A	0.931	1.00
80_L	110_S	0.929	1.00
14_G	20_A	0.929	1.00
47_V	51_T	0.928	1.00
67_V	102_T	0.926	1.00
136_A	171_P	0.925	1.00
290_Y	367_R	0.925	1.00
230_G	238_A	0.918	1.00
16_G	177_D	0.914	1.00
41_L	44_C	0.908	1.00
260_L	287_V	0.905	1.00
187_A	191_A	0.905	1.00
337_P	341_D	0.904	1.00
39_K	43_Q	0.904	1.00
42_V	51_T	0.899	1.00
100_Q	138_P	0.899	1.00
49_K	53_K	0.899	1.00
10_T	27_R	0.896	1.00
33_A	89_D	0.893	1.00
265_A	269_G	0.891	1.00
22_T	56_A	0.888	1.00
93_A	136_A	0.887	1.00
20_A	24_E	0.886	1.00
18_V	180_M	0.883	1.00
222_E	226_G	0.883	1.00
223_I	245_G	0.881	1.00
70_N	273_N	0.881	1.00
355_A	358_D	0.877	1.00
232_V	334_G	0.874	1.00
64_Y	78_E	0.872	1.00
19_G	53_K	0.872	1.00
49_K	52_D	0.869	1.00
197_L	224_I	0.868	1.00
72_T	156_E	0.867	1.00
216_L	248_V	0.864	1.00
18_V	179_D	0.859	1.00
33_A	59_L	0.859	1.00
229_R	232_V	0.858	1.00
317_E	321_A	0.856	1.00
203_G	214_D	0.856	1.00
336_P	341_D	0.851	1.00
107_G	132_V	0.849	1.00
214_D	217_H	0.848	1.00
222_E	304_R	0.848	1.00
80_L	106_I	0.847	1.00
286_H	289_R	0.842	1.00
198_T	284_L	0.841	1.00
327_F	331_R	0.835	1.00
232_V	333_V	0.834	1.00
267_P	378_Y	0.831	1.00
76_V	105_A	0.830	1.00
41_L	46_V	0.826	1.00
215_A	222_E	0.826	1.00
223_I	241_E	0.824	1.00
201_I	302_I	0.820	1.00
35_I	51_T	0.820	1.00
118_V	121_L	0.817	1.00
353_A	357_L	0.813	1.00
308_V	321_A	0.813	1.00
68_V	78_E	0.810	1.00
93_A	100_Q	0.810	1.00
41_L	47_V	0.810	1.00
224_I	245_G	0.809	1.00
112_N	129_K	0.809	1.00
272_Y	348_D	0.807	1.00
110_S	132_V	0.806	1.00
290_Y	369_A	0.804	1.00
244_L	248_V	0.803	1.00
32_K	89_D	0.799	1.00
72_T	273_N	0.797	1.00
222_E	301_D	0.797	1.00
36_V	99_P	0.792	1.00
231_S	238_A	0.789	1.00
136_A	174_A	0.787	1.00
141_A	243_A	0.787	1.00
77_K	80_L	0.782	1.00
102_T	106_I	0.782	1.00
100_Q	145_A	0.782	1.00
64_Y	79_G	0.782	1.00
209_A	214_D	0.781	1.00
49_K	180_M	0.779	1.00
357_L	374_I	0.779	1.00
107_G	134_I	0.777	1.00
230_G	233_A	0.776	1.00
197_L	201_I	0.775	1.00
328_A	331_R	0.774	1.00
201_I	221_I	0.772	1.00
267_P	355_A	0.771	1.00
203_G	217_H	0.771	1.00
205_I	288_M	0.768	1.00
134_I	172_Q	0.766	1.00
190_A	335_I	0.765	1.00
74_T	78_E	0.761	1.00
108_I	169_D	0.760	1.00
220_A	249_A	0.756	1.00
149_I	167_P	0.755	1.00
207_R	368_E	0.754	1.00
12_W	17_A	0.754	1.00
159_R	273_N	0.753	1.00
260_L	374_I	0.752	1.00
51_T	63_I	0.752	1.00
18_V	177_D	0.751	1.00
262_H	276_H	0.749	1.00
200_A	217_H	0.746	1.00
33_A	61_W	0.746	1.00
302_I	326_V	0.740	1.00
227_A	242_M	0.739	1.00
227_A	237_D	0.738	1.00
21_L	137_I	0.737	1.00
38_D	44_C	0.735	1.00
288_M	299_Y	0.734	1.00
184_M	192_T	0.734	1.00
18_V	50_V	0.732	1.00
350_P	353_A	0.731	1.00
186_P	334_G	0.730	1.00
181_M	189_K	0.725	1.00
78_E	82_V	0.725	1.00
283_L	377_L	0.723	1.00
53_K	56_A	0.721	1.00
225_A	229_R	0.720	1.00
26_K	31_Q	0.715	1.00
13_F	240_E	0.715	1.00
37_T	63_I	0.712	1.00
289_R	323_V	0.712	1.00
25_V	92_I	0.707	1.00
227_A	231_S	0.702	1.00
105_A	153_I	0.701	1.00
226_G	230_G	0.700	1.00
46_V	94_I	0.700	1.00
31_Q	60_A	0.698	0.99
268_L	279_A	0.698	0.99
141_A	181_M	0.695	0.99
24_E	28_R	0.692	0.99
111_N	132_V	0.692	0.99
308_V	325_A	0.691	0.99
45_G	48_A	0.691	0.99
288_M	323_V	0.689	0.99
22_T	57_A	0.688	0.99
204_Y	298_K	0.687	0.99
336_P	342_V	0.687	0.99
289_R	292_A	0.686	0.99
19_G	56_A	0.686	0.99
204_Y	218_I	0.686	0.99
237_D	240_E	0.684	0.99
300_R	304_R	0.683	0.99
327_F	337_P	0.683	0.99
349_I	378_Y	0.680	0.99
208_G	257_G	0.678	0.99
18_V	53_K	0.678	0.99
195_D	276_H	0.678	0.99
265_A	280_N	0.678	0.99
209_A	298_K	0.677	0.99
329_L	333_V	0.677	0.99
331_R	341_D	0.676	0.99
219_K	248_V	0.674	0.99
285_P	330_N	0.666	0.99
292_A	296_G	0.666	0.99
309_K	318_A	0.665	0.99
221_I	225_A	0.660	0.99
193_G	333_V	0.657	0.99
303_A	308_V	0.657	0.99
38_D	43_Q	0.655	0.99
19_G	179_D	0.653	0.99
296_G	319_R	0.653	0.99
77_K	109_I	0.652	0.99
25_V	54_M	0.651	0.99
288_M	322_A	0.650	0.99
93_A	99_P	0.650	0.99
22_T	26_K	0.642	0.99
34_L	86_S	0.641	0.99
32_K	88_A	0.639	0.99
278_V	336_P	0.639	0.99
76_V	106_I	0.635	0.99
198_T	280_N	0.635	0.99
235_D	239_G	0.633	0.99
105_A	151_Y	0.632	0.99
324_E	327_F	0.632	0.99
318_A	321_A	0.632	0.99
109_I	113_P	0.630	0.99
321_A	325_A	0.630	0.99
55_D	58_G	0.629	0.99
367_R	373_D	0.625	0.99
209_A	213_T	0.624	0.99
48_A	55_D	0.623	0.99
23_D	26_K	0.619	0.99
290_Y	370_T	0.618	0.99
369_A	374_I	0.616	0.99
305_V	308_V	0.615	0.99
12_W	173_V	0.613	0.99
240_E	244_L	0.612	0.99
295_T	299_Y	0.612	0.99
135_L	175_F	0.611	0.99
195_D	262_H	0.611	0.99
231_S	242_M	0.610	0.99
257_G	364_G	0.610	0.99
369_A	377_L	0.609	0.99
108_I	127_T	0.609	0.99
236_K	240_E	0.609	0.99
281_A	330_N	0.608	0.99
266_H	359_D	0.606	0.99
198_T	261_V	0.606	0.99
117_D	121_L	0.605	0.99
176_I	247_Y	0.605	0.99
274_T	342_V	0.604	0.99
34_L	62_A	0.603	0.99
301_D	305_V	0.603	0.99
296_G	300_R	0.602	0.98
222_E	305_V	0.602	0.98
205_I	299_Y	0.600	0.98
218_I	304_R	0.600	0.98
201_I	284_L	0.599	0.98
182_D	239_G	0.598	0.98
369_A	373_D	0.597	0.98
23_D	27_R	0.596	0.98
275_P	278_V	0.595	0.98
11_A	174_A	0.595	0.98
302_I	306_M	0.594	0.98
268_L	378_Y	0.593	0.98
285_P	327_F	0.593	0.98
130_P	168_H	0.592	0.98
74_T	77_K	0.591	0.98
83_F	91_L	0.591	0.98
113_P	121_L	0.589	0.98
70_N	98_S	0.588	0.98
263_G	361_C	0.584	0.98
199_H	249_A	0.584	0.98
201_I	322_A	0.583	0.98
21_L	53_K	0.583	0.98
19_G	52_D	0.582	0.98
13_F	244_L	0.581	0.98
224_I	228_L	0.579	0.98
151_Y	164_C	0.577	0.98
207_R	364_G	0.572	0.98
226_G	229_R	0.572	0.98
280_N	283_L	0.570	0.98
161_K	276_H	0.567	0.98
268_L	339_L	0.566	0.98
299_Y	303_A	0.566	0.98
344_V	349_I	0.564	0.98
326_V	330_N	0.563	0.98
304_R	307_G	0.561	0.98
178_A	236_K	0.560	0.98
193_G	224_I	0.558	0.98
138_P	246_Q	0.557	0.98
111_N	131_S	0.557	0.98
37_T	99_P	0.556	0.97
216_L	220_A	0.556	0.97
50_V	53_K	0.555	0.97
147_V	251_M	0.555	0.97
289_R	324_E	0.554	0.97
68_V	273_N	0.553	0.97
204_Y	214_D	0.553	0.97
285_P	323_V	0.552	0.97
278_V	335_I	0.551	0.97
259_G	266_H	0.551	0.97
117_D	122_E	0.549	0.97
201_I	288_M	0.546	0.97
206_T	209_A	0.546	0.97
92_I	135_L	0.546	0.97
225_A	228_L	0.546	0.97
206_T	364_G	0.545	0.97
21_L	175_F	0.545	0.97
43_Q	48_A	0.545	0.97
137_I	175_F	0.544	0.97
194_V	333_V	0.543	0.97
131_S	172_Q	0.543	0.97
46_V	180_M	0.541	0.97
346_K	349_I	0.541	0.97
199_H	276_H	0.541	0.97
253_F	258_L	0.540	0.97
119_R	122_E	0.539	0.97
118_V	122_E	0.538	0.97
113_P	116_A	0.538	0.97
25_V	59_L	0.537	0.97
138_P	176_I	0.537	0.97
148_T	250_G	0.536	0.97
15_R	237_D	0.535	0.97
260_L	365_N	0.535	0.97
44_C	47_V	0.535	0.97
47_V	94_I	0.534	0.97
67_V	70_N	0.533	0.97
28_R	135_L	0.532	0.97
112_N	131_S	0.531	0.97
330_N	335_I	0.530	0.97
34_L	64_Y	0.530	0.97
283_L	287_V	0.530	0.97
292_A	299_Y	0.529	0.97
35_I	94_I	0.528	0.97
349_I	353_A	0.528	0.97
91_L	106_I	0.528	0.97
26_K	59_L	0.527	0.97
36_V	79_G	0.526	0.97
353_A	374_I	0.526	0.97
12_W	175_F	0.525	0.96
340_R	346_K	0.524	0.96
54_M	61_W	0.524	0.96
62_A	85_N	0.524	0.96
241_E	244_L	0.523	0.96
198_T	259_G	0.521	0.96
239_G	243_A	0.520	0.96
223_I	227_A	0.518	0.96
120_S	125_S	0.516	0.96
356_A	378_Y	0.516	0.96
113_P	117_D	0.515	0.96
193_G	232_V	0.512	0.96
166_D	169_D	0.512	0.96
286_H	377_L	0.512	0.96
156_E	159_R	0.512	0.96
260_L	263_G	0.511	0.96
40_T	99_P	0.511	0.96
298_K	301_D	0.509	0.96
112_N	128_N	0.508	0.96
60_A	86_S	0.508	0.96
22_T	25_V	0.506	0.96
223_I	248_V	0.506	0.96
259_G	364_G	0.506	0.96
278_V	342_V	0.506	0.96
266_H	269_G	0.505	0.96
339_L	344_V	0.505	0.96
186_P	189_K	0.505	0.96
90_Y	133_P	0.505	0.96
149_I	254_S	0.504	0.96
330_N	333_V	0.503	0.96
70_N	269_G	0.503	0.96
264_M	267_P	0.501	0.95
75_V	102_T	0.501	0.95
210_W	213_T	0.501	0.95
282_I	285_P	0.501	0.95
46_V	49_K	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1rrmA	2	0.9974	100	0.078	Contact Map
3bfjA	5	0.9921	100	0.086	Contact Map
3ox4A	2	0.9948	100	0.088	Contact Map
4fr2A	2	0.9921	100	0.105	Contact Map
1vljA	2	0.9869	100	0.116	Contact Map
3zdrA	2	0.9764	100	0.137	Contact Map
4qgsA	2	0.9686	100	0.144	Contact Map
1o2dA	1	0.9346	100	0.152	Contact Map
3w5sA	2	0.8874	100	0.188	Contact Map
3jzdA	3	0.8979	100	0.189	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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