TRXB - ECOLI - GREMLIN Contacts

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TRXB - Thioredoxin reductase

UniProt:	P0A9P4	Sequences: MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11032
Length:	321 (286)
Sequences:	60364 (42211)
Seq/√Len:	2496.0

ECOLI - TRXB AHPF STHA DLDH GSHR RCLA HCAD DHNA NORW PRET GLTD NIRB YGFT FADH AEGA YGFK
BACSU - DHNA TRXB DLDH3 DLDH2 DLDH1 FENR2 FENR1 YPDA YUMB YJLD CZCO YUTJ GLTB NASB NASD
HALSA - P82854 DLDH Q9HSN0 Q9HP48 Q9HR27 O54535
SULSO - Q97V69 Q97VD9 Q97W27 Q97WE3 FENR Q97XZ3 Q97WG1 Q97YT2 Q97Z19 Q97Z14 Q97Y24 Q97VJ3 Q97VQ4 Q97U72 Q97UV0 Q97UP4 Q97ZB4 Q980U1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
150_A	237_V	4.046	1.00
37_G	84_H	3.700	1.00
148_K	171_E	3.434	1.00
173_H	203_H	3.292	1.00
210_E	222_R	3.047	1.00
171_E	201_I	3.023	1.00
8_K	107_D	2.905	1.00
212_T	222_R	2.783	1.00
267_Q	276_Q	2.752	1.00
8_K	31_Q	2.514	1.00
225_D	233_E	2.506	1.00
148_K	238_A	2.448	1.00
150_A	175_I	2.397	1.00
123_P	210_E	2.367	1.00
203_H	233_E	2.346	1.00
21_A	110_I	2.331	1.00
222_R	234_S	2.264	1.00
10_L	35_I	2.260	1.00
33_V	81_I	2.257	1.00
9_L	25_A	2.255	1.00
258_E	265_K	2.253	1.00
118_R	247_S	2.241	1.00
212_T	220_G	2.236	1.00
10_L	97_L	2.221	1.00
35_I	104_Y	2.156	1.00
209_E	224_R	2.150	1.00
150_A	221_V	2.146	1.00
93_R	281_G	2.144	1.00
6_H	105_T	2.129	1.00
7_S	33_V	2.112	1.00
207_T	224_R	2.106	1.00
110_I	310_A	2.091	1.00
10_L	104_Y	2.047	1.00
96_R	103_E	2.046	1.00
148_K	173_H	2.042	1.00
192_M	196_E	1.952	1.00
209_E	222_R	1.910	1.00
220_G	234_S	1.871	1.00
6_H	107_D	1.853	1.00
177_R	207_T	1.811	1.00
90_L	279_I	1.807	1.00
8_K	33_V	1.797	1.00
17_A	285_A	1.761	1.00
212_T	234_S	1.748	1.00
127_A	213_G	1.714	1.00
99_G	102_G	1.709	1.00
148_K	236_D	1.707	1.00
106_C	109_L	1.693	1.00
108_A	281_G	1.658	1.00
31_Q	79_E	1.652	1.00
116_S	249_N	1.651	1.00
206_R	225_D	1.635	1.00
175_I	235_L	1.608	1.00
98_N	103_E	1.607	1.00
135_A	138_T	1.589	1.00
213_G	219_T	1.575	1.00
147_Q	238_A	1.555	1.00
148_K	170_S	1.552	1.00
116_S	247_S	1.546	1.00
220_G	236_D	1.544	1.00
260_E	263_Y	1.542	1.00
99_G	104_Y	1.535	1.00
173_H	201_I	1.532	1.00
223_L	235_L	1.497	1.00
87_K	98_N	1.495	1.00
116_S	251_A	1.491	1.00
223_L	226_T	1.490	1.00
211_V	240_L	1.483	1.00
307_A	311_E	1.483	1.00
110_I	285_A	1.479	1.00
10_L	106_C	1.477	1.00
61_T	64_L	1.477	1.00
96_R	105_T	1.473	1.00
10_L	33_V	1.473	1.00
89_D	92_N	1.451	1.00
258_E	278_S	1.439	1.00
306_A	310_A	1.426	1.00
303_G	307_A	1.415	1.00
203_H	206_R	1.390	1.00
11_I	18_G	1.379	1.00
90_L	282_V	1.363	1.00
11_I	22_A	1.355	1.00
149_V	165_L	1.352	1.00
89_D	96_R	1.351	1.00
113_T	288_V	1.325	1.00
84_H	100_D	1.315	1.00
22_A	34_L	1.298	1.00
206_R	223_L	1.293	1.00
67_E	71_E	1.284	1.00
108_A	310_A	1.283	1.00
14_S	36_T	1.279	1.00
206_R	233_E	1.268	1.00
283_F	309_D	1.264	1.00
173_H	237_V	1.250	1.00
108_A	283_F	1.248	1.00
9_L	110_I	1.240	1.00
24_Y	308_L	1.225	1.00
279_I	282_V	1.218	1.00
72_H	76_F	1.216	1.00
260_E	265_K	1.211	1.00
33_V	104_Y	1.208	1.00
179_D	205_N	1.197	1.00
121_G	125_E	1.187	1.00
88_V	109_L	1.184	1.00
159_V	174_L	1.160	1.00
70_H	74_T	1.158	1.00
146_N	170_S	1.154	1.00
252_I	255_G	1.151	1.00
112_A	285_A	1.150	1.00
24_Y	27_R	1.150	1.00
223_L	233_E	1.148	1.00
154_G	176_H	1.147	1.00
134_S	138_T	1.145	1.00
180_G	188_I	1.145	1.00
260_E	290_D	1.124	1.00
9_L	30_L	1.121	1.00
264_I	284_A	1.111	1.00
35_I	81_I	1.109	1.00
86_N	98_N	1.106	1.00
25_A	307_A	1.099	1.00
176_H	204_T	1.095	1.00
267_Q	274_A	1.089	1.00
152_I	240_L	1.087	1.00
51_E	55_G	1.087	1.00
305_M	309_D	1.077	1.00
185_K	189_K	1.070	1.00
194_K	197_N	1.070	1.00
166_S	200_I	1.067	1.00
145_R	170_S	1.063	1.00
276_Q	280_P	1.061	1.00
266_V	289_M	1.059	1.00
264_I	288_V	1.048	1.00
17_A	299_S	1.045	1.00
158_A	176_H	1.045	1.00
12_L	111_I	1.041	1.00
175_I	223_L	1.038	1.00
7_S	10_L	1.035	1.00
86_N	100_D	1.033	1.00
149_V	239_G	1.011	1.00
162_A	174_L	1.002	1.00
89_D	98_N	1.001	1.00
71_E	74_T	0.997	1.00
214_D	236_D	0.996	1.00
166_S	171_E	0.990	1.00
131_R	135_A	0.988	1.00
194_K	198_G	0.979	1.00
39_E	70_H	0.977	1.00
284_A	288_V	0.968	1.00
28_A	311_E	0.965	1.00
51_E	54_P	0.957	1.00
26_A	78_T	0.957	1.00
138_T	141_G	0.956	1.00
149_V	170_S	0.950	1.00
73_A	76_F	0.945	1.00
7_S	79_E	0.943	1.00
81_I	104_Y	0.943	1.00
285_A	306_A	0.941	1.00
7_S	31_Q	0.938	1.00
28_A	308_L	0.933	1.00
131_R	134_S	0.933	1.00
21_A	285_A	0.933	1.00
268_S	274_A	0.930	1.00
193_D	196_E	0.930	1.00
66_M	70_H	0.930	1.00
150_A	235_L	0.926	1.00
214_D	219_T	0.921	1.00
167_N	198_G	0.920	1.00
53_W	56_D	0.918	1.00
71_E	75_K	0.917	1.00
12_L	85_I	0.916	1.00
201_I	233_E	0.905	1.00
35_I	85_I	0.904	1.00
266_V	284_A	0.900	1.00
169_A	172_V	0.895	1.00
139_C	142_F	0.891	1.00
151_V	162_A	0.889	1.00
287_D	299_S	0.888	1.00
24_Y	28_A	0.886	1.00
136_C	139_C	0.882	1.00
25_A	30_L	0.877	1.00
189_K	192_M	0.877	1.00
259_L	265_K	0.876	1.00
52_N	56_D	0.876	1.00
21_A	303_G	0.872	1.00
299_S	303_G	0.868	1.00
8_K	30_L	0.868	1.00
208_L	221_V	0.866	1.00
267_Q	275_T	0.864	1.00
6_H	31_Q	0.863	1.00
276_Q	281_G	0.861	1.00
134_S	142_F	0.861	1.00
68_R	71_E	0.861	1.00
154_G	181_F	0.857	1.00
33_V	106_C	0.856	1.00
150_A	240_L	0.856	1.00
35_I	99_G	0.855	1.00
124_S	127_A	0.852	1.00
12_L	113_T	0.850	1.00
25_A	310_A	0.848	1.00
132_G	135_A	0.843	1.00
193_D	197_N	0.842	1.00
18_G	22_A	0.840	1.00
109_L	282_V	0.839	1.00
87_K	255_G	0.838	1.00
111_I	288_V	0.838	1.00
9_L	108_A	0.838	1.00
33_V	79_E	0.837	1.00
8_K	105_T	0.834	1.00
21_A	306_A	0.829	1.00
206_R	224_R	0.829	1.00
192_M	204_T	0.826	1.00
85_I	97_L	0.826	1.00
83_D	101_N	0.820	1.00
7_S	108_A	0.814	1.00
289_M	302_T	0.814	1.00
173_H	235_L	0.814	1.00
175_I	206_R	0.807	1.00
52_N	55_G	0.805	1.00
283_F	310_A	0.803	1.00
137_A	141_G	0.795	1.00
276_Q	279_I	0.792	1.00
62_G	69_M	0.786	1.00
124_S	210_E	0.785	1.00
23_V	27_R	0.784	1.00
211_V	221_V	0.779	1.00
175_I	203_H	0.778	1.00
67_E	70_H	0.778	1.00
152_I	242_V	0.774	1.00
275_T	306_A	0.774	1.00
91_Q	96_R	0.774	1.00
203_H	235_L	0.773	1.00
189_K	193_D	0.773	1.00
237_V	240_L	0.772	1.00
9_L	310_A	0.770	1.00
11_I	21_A	0.767	1.00
251_A	254_E	0.765	1.00
152_I	244_I	0.762	1.00
24_Y	304_C	0.761	1.00
22_A	78_T	0.760	1.00
275_T	305_M	0.759	1.00
22_A	32_P	0.758	1.00
147_Q	170_S	0.753	1.00
275_T	289_M	0.753	1.00
26_A	32_P	0.737	1.00
7_S	107_D	0.735	1.00
285_A	310_A	0.733	1.00
152_I	208_L	0.732	1.00
148_K	237_V	0.728	1.00
18_G	112_A	0.727	1.00
306_A	309_D	0.727	1.00
83_D	100_D	0.724	1.00
192_M	202_L	0.715	1.00
8_K	104_Y	0.714	1.00
284_A	289_M	0.711	1.00
140_D	144_Y	0.710	1.00
98_N	101_N	0.710	1.00
110_I	306_A	0.707	1.00
136_C	140_D	0.707	1.00
180_G	185_K	0.706	1.00
155_G	245_G	0.705	1.00
69_M	72_H	0.701	1.00
64_L	67_E	0.701	1.00
8_K	106_C	0.700	1.00
196_E	201_I	0.698	1.00
73_A	78_T	0.694	1.00
188_I	192_M	0.692	1.00
139_C	143_F	0.691	1.00
59_D	62_G	0.688	1.00
181_F	204_T	0.687	1.00
298_T	302_T	0.686	1.00
20_T	303_G	0.684	1.00
30_L	311_E	0.678	1.00
14_S	34_L	0.675	1.00
134_S	143_F	0.675	1.00
285_A	303_G	0.674	1.00
212_T	215_Q	0.673	1.00
14_S	40_K	0.672	1.00
62_G	66_M	0.671	1.00
190_R	194_K	0.669	1.00
135_A	143_F	0.667	1.00
122_L	125_E	0.666	1.00
136_C	143_F	0.659	1.00
304_C	308_L	0.659	1.00
115_A	246_H	0.659	1.00
184_E	187_L	0.655	1.00
166_S	198_G	0.653	1.00
135_A	140_D	0.653	1.00
187_L	190_R	0.652	1.00
25_A	32_P	0.651	1.00
256_Q	259_L	0.651	1.00
162_A	200_I	0.650	1.00
176_H	179_D	0.647	1.00
40_K	82_F	0.646	1.00
134_S	239_G	0.644	1.00
63_P	67_E	0.642	1.00
120_L	242_V	0.640	1.00
30_L	107_D	0.638	1.00
147_Q	239_G	0.637	1.00
205_N	226_T	0.637	1.00
274_A	277_T	0.637	1.00
153_G	245_G	0.636	1.00
166_S	199_N	0.634	1.00
214_D	220_G	0.633	1.00
174_L	202_L	0.631	1.00
68_R	72_H	0.631	1.00
120_L	125_E	0.623	1.00
125_E	242_V	0.620	1.00
275_T	309_D	0.620	1.00
35_I	106_C	0.620	1.00
139_C	165_L	0.617	1.00
190_R	193_D	0.616	1.00
137_A	140_D	0.615	1.00
186_I	190_R	0.614	1.00
302_T	306_A	0.612	1.00
132_G	242_V	0.611	1.00
11_I	112_A	0.611	1.00
119_Y	126_E	0.611	1.00
119_Y	242_V	0.610	1.00
134_S	137_A	0.610	1.00
180_G	192_M	0.608	1.00
140_D	143_F	0.608	1.00
181_F	188_I	0.607	1.00
136_C	142_F	0.601	1.00
30_L	310_A	0.598	1.00
17_A	112_A	0.594	1.00
120_L	244_I	0.593	1.00
21_A	307_A	0.592	1.00
147_Q	171_E	0.592	1.00
127_A	131_R	0.591	1.00
162_A	172_V	0.591	1.00
87_K	90_L	0.591	1.00
257_L	279_I	0.590	1.00
9_L	307_A	0.590	1.00
64_L	68_R	0.589	1.00
149_V	241_F	0.588	1.00
265_K	278_S	0.588	1.00
211_V	219_T	0.587	1.00
131_R	137_A	0.587	1.00
85_I	99_G	0.586	1.00
163_L	167_N	0.586	1.00
40_K	80_I	0.586	1.00
61_T	68_R	0.584	1.00
135_A	139_C	0.583	1.00
215_Q	234_S	0.582	1.00
60_L	64_L	0.581	1.00
203_H	223_L	0.580	1.00
205_N	225_D	0.578	1.00
134_S	139_C	0.577	1.00
72_H	75_K	0.577	1.00
274_A	278_S	0.576	1.00
26_A	77_E	0.576	1.00
119_Y	135_A	0.573	1.00
219_T	222_R	0.570	1.00
257_L	264_I	0.570	1.00
118_R	244_I	0.569	1.00
61_T	65_L	0.568	1.00
259_L	264_I	0.567	1.00
11_I	32_P	0.567	1.00
277_T	284_A	0.566	1.00
65_L	68_R	0.566	1.00
183_A	186_I	0.566	1.00
158_A	177_R	0.565	1.00
26_A	31_Q	0.565	1.00
45_T	48_T	0.564	1.00
183_A	190_R	0.563	1.00
134_S	140_D	0.562	1.00
26_A	79_E	0.561	1.00
131_R	138_T	0.561	1.00
72_H	77_E	0.561	1.00
132_G	138_T	0.560	1.00
20_T	24_Y	0.560	1.00
254_E	259_L	0.558	1.00
11_I	34_L	0.557	1.00
161_E	241_F	0.556	1.00
131_R	136_C	0.555	1.00
136_C	141_G	0.553	1.00
308_L	312_R	0.553	1.00
133_V	211_V	0.551	1.00
85_I	90_L	0.550	1.00
134_S	141_G	0.549	1.00
89_D	93_R	0.549	1.00
159_V	202_L	0.548	1.00
184_E	188_I	0.544	1.00
131_R	143_F	0.543	1.00
301_G	304_C	0.542	1.00
175_I	237_V	0.542	1.00
184_E	190_R	0.539	1.00
51_E	56_D	0.538	1.00
207_T	226_T	0.537	1.00
151_V	158_A	0.537	1.00
109_L	281_G	0.537	1.00
69_M	73_A	0.536	1.00
36_T	80_I	0.536	1.00
61_T	69_M	0.535	1.00
122_L	211_V	0.534	1.00
38_M	47_T	0.534	1.00
290_D	302_T	0.533	1.00
161_E	243_A	0.532	1.00
119_Y	125_E	0.531	1.00
196_E	199_N	0.531	1.00
283_F	306_A	0.530	1.00
62_G	65_L	0.529	1.00
20_T	300_A	0.528	1.00
36_T	82_F	0.521	1.00
63_P	66_M	0.521	1.00
150_A	173_H	0.520	1.00
131_R	142_F	0.520	1.00
93_R	96_R	0.519	1.00
20_T	23_V	0.519	1.00
276_Q	309_D	0.519	1.00
24_Y	307_A	0.517	1.00
21_A	310_A	0.516	1.00
184_E	191_L	0.515	1.00
121_G	126_E	0.514	1.00
295_Q	298_T	0.513	1.00
50_V	54_P	0.513	1.00
186_I	189_K	0.512	1.00
275_T	278_S	0.511	1.00
183_A	187_L	0.511	1.00
92_N	96_R	0.511	1.00
301_G	305_M	0.511	1.00
142_F	239_G	0.509	1.00
132_G	136_C	0.508	1.00
127_A	210_E	0.505	1.00
195_V	202_L	0.505	1.00
261_N	290_D	0.504	1.00
34_L	78_T	0.502	1.00
138_T	142_F	0.501	1.00
66_M	69_M	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1trbA	2	0.9844	100	0.226	Contact Map
2q0lA	2	0.9439	100	0.254	Contact Map
2a87A	2	0.9688	100	0.254	Contact Map
2q7vA	2	0.9533	100	0.254	Contact Map
3r9uA	2	0.9439	100	0.264	Contact Map
4jnqA	2	0.9626	100	0.266	Contact Map
1vdcA	2	0.9502	100	0.27	Contact Map
4up3A	2	0.9439	100	0.274	Contact Map
3ctyA	2	0.9439	100	0.274	Contact Map
1fl2A	2	0.9439	100	0.282	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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