GREMLIN Database
FTNB - Bacterial non-heme ferritin-like protein
UniProt: P0A9A2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13175
Length: 167 (159)
Sequences: 2313 (1508)
Seq/√Len: 119.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
88_Q142_R3.3051.00
16_R100_T3.2111.00
84_E138_L2.7091.00
106_D112_N2.5731.00
109_K117_V2.5051.00
3_T111_L2.3741.00
61_M66_A2.3691.00
9_K107_E2.3531.00
81_N85_E2.2871.00
31_C86_L2.2481.00
14_M61_M2.2251.00
118_N125_K2.2111.00
84_E142_R2.1811.00
7_L66_A2.1481.00
39_T83_L2.0551.00
90_T134_L1.9981.00
132_L136_T1.9601.00
63_S132_L1.9421.00
87_F141_V1.8511.00
56_R122_D1.8511.00
5_G111_L1.8421.00
8_L12_S1.8151.00
89_K92_E1.7661.00
10_L57_M1.7381.00
10_L116_T1.7181.00
96_Q100_T1.7111.00
91_M95_E1.7061.00
31_C43_L1.6831.00
106_D110_E1.6541.00
32_S40_A1.6381.00
41_T45_A1.6041.00
65_G135_Q1.5901.00
106_D114_D1.5891.00
10_L61_M1.5771.00
44_R59_N1.5411.00
4_A8_L1.5391.00
22_N70_V1.5361.00
21_S47_A1.5291.00
35_S139_D1.5251.00
43_L90_T1.4621.00
29_N58_F1.4571.00
46_Q133_L1.4521.00
71_K75_V1.4031.00
5_G110_E1.3961.00
80_L89_K1.3951.00
82_S85_E1.3861.00
31_C83_L1.3741.00
50_N53_Q1.3641.00
77_G89_K1.3561.00
9_K104_L1.3281.00
105_A124_E1.3261.00
96_Q99_S1.3041.00
18_F54_M1.3031.00
99_S103_Q1.2931.00
2_A10_L1.2811.00
32_S37_N1.2741.00
24_Y94_Y1.2660.99
84_E88_Q1.2570.99
56_R123_L1.2210.99
88_Q92_E1.2180.99
84_E141_V1.1960.99
105_A117_V1.1960.99
33_E67_T1.1860.99
85_E88_Q1.1620.99
69_I75_V1.1550.99
87_F137_I1.1480.99
42_F133_L1.1410.99
39_T154_T1.1120.99
145_K148_G1.0890.98
42_F134_L1.0800.98
39_T87_F1.0780.98
26_H80_L1.0600.98
3_T6_M1.0590.98
27_L80_L1.0580.98
16_R96_Q1.0450.98
30_W34_Q1.0420.98
135_Q139_D1.0400.98
105_A120_L1.0150.98
92_E95_E1.0140.98
109_K112_N1.0090.97
46_Q130_D1.0090.97
17_E53_Q1.0040.97
115_S124_E1.0000.97
121_R125_K0.9990.97
28_S44_R0.9960.97
94_Y127_Q0.9940.97
25_L55_M0.9930.97
137_I154_T0.9930.97
105_A121_R0.9870.97
43_L86_L0.9840.97
77_G85_E0.9820.97
52_T56_R0.9810.97
60_F116_T0.9750.97
140_E157_H0.9710.97
156_Q160_N0.9680.97
15_N71_K0.9670.97
48_Q51_V0.9570.97
17_E127_Q0.9550.96
28_S47_A0.9530.96
45_A133_L0.9530.96
30_W86_L0.9440.96
87_F138_L0.9440.96
72_A75_V0.9310.96
102_A114_D0.9150.96
6_M116_T0.8960.95
85_E89_K0.8950.95
10_L60_F0.8940.95
49_S53_Q0.8930.95
118_N121_R0.8920.95
98_S131_G0.8900.95
19_Y23_L0.8890.95
45_A48_Q0.8810.95
32_S44_R0.8720.94
50_N130_D0.8710.94
5_G107_E0.8490.93
19_Y76_P0.8450.93
21_S51_V0.8390.93
137_I141_V0.8110.92
7_L61_M0.8070.91
37_N136_T0.8020.91
18_F22_N0.7990.91
50_N97_R0.7980.91
45_A52_T0.7920.91
20_A97_R0.7870.90
43_L137_I0.7820.90
17_E49_S0.7720.90
10_L14_M0.7660.89
4_A7_L0.7630.89
2_A61_M0.7620.89
80_L86_L0.7580.89
97_R100_T0.7510.88
18_F25_L0.7480.88
37_N140_E0.7440.88
125_K129_H0.7410.88
12_S71_K0.7400.88
23_L80_L0.7380.87
97_R126_E0.7310.87
13_Q17_E0.7140.86
58_F62_K0.7140.86
117_V121_R0.7090.85
50_N126_E0.7090.85
147_A150_C0.7070.85
36_L39_T0.7030.85
19_Y74_D0.7020.85
52_T160_N0.6980.84
57_M120_L0.6980.84
2_A66_A0.6960.84
4_A81_N0.6930.84
149_M152_V0.6900.84
102_A124_E0.6840.83
114_D117_V0.6840.83
51_V55_M0.6760.82
53_Q97_R0.6740.82
17_E130_D0.6730.82
41_T159_L0.6680.82
15_N74_D0.6660.81
20_A100_T0.6620.81
29_N68_P0.6610.81
105_A114_D0.6580.81
137_I158_V0.6570.81
67_T79_K0.6540.80
8_L69_I0.6530.80
15_N19_Y0.6490.80
144_A150_C0.6420.79
83_L86_L0.6400.79
64_V113_D0.6390.79
104_L107_E0.6390.79
107_E111_L0.6350.78
109_K114_D0.6330.78
5_G8_L0.6300.78
86_L90_T0.6290.78
38_G158_V0.6280.78
46_Q50_N0.6270.77
55_M58_F0.6240.77
60_F122_D0.6240.77
53_Q126_E0.6220.77
49_S130_D0.6210.77
6_M108_A0.6180.76
63_S129_H0.6110.76
17_E50_N0.6060.75
53_Q130_D0.6010.74
63_S118_N0.6000.74
19_Y73_I0.5990.74
91_M135_Q0.5970.74
149_M153_Q0.5960.74
38_G41_T0.5940.74
13_Q126_E0.5880.73
21_S48_Q0.5870.73
127_Q130_D0.5860.73
94_Y126_E0.5830.72
49_S126_E0.5790.72
57_M119_F0.5780.72
13_Q50_N0.5780.72
44_R47_A0.5750.71
56_R63_S0.5750.71
2_A60_F0.5740.71
14_M68_P0.5740.71
53_Q127_Q0.5730.71
126_E130_D0.5710.71
12_S100_T0.5690.70
35_S136_T0.5660.70
156_Q159_L0.5610.69
18_F51_V0.5580.69
47_A51_V0.5570.69
151_P158_V0.5570.69
8_L75_V0.5530.68
43_L134_L0.5530.68
69_I72_A0.5480.68
19_Y77_G0.5470.67
20_A93_E0.5430.67
62_K68_P0.5390.66
17_E97_R0.5390.66
25_L28_S0.5360.66
88_Q138_L0.5350.66
31_C39_T0.5320.65
16_R23_L0.5310.65
99_S106_D0.5300.65
95_E135_Q0.5300.65
75_V78_E0.5270.65
60_F113_D0.5270.65
101_L124_E0.5260.64
153_Q156_Q0.5240.64
49_S94_Y0.5240.64
48_Q55_M0.5240.64
87_F115_S0.5230.64
2_A37_N0.5180.63
102_A115_S0.5180.63
12_S16_R0.5130.62
23_L93_E0.5110.62
98_S102_A0.5080.62
57_M101_L0.5060.61
64_V128_Q0.5060.61
71_K74_D0.5050.61
63_S122_D0.5050.61
28_S40_A0.5050.61
90_T138_L0.5010.61
43_L87_F0.5010.61
83_L141_V0.5000.61
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1z6oA 3 0.9641 100 0.242 Contact Map
1z6oM 4 0.976 100 0.257 Contact Map
1vlgA 6 0.9701 100 0.26 Contact Map
3a68A 7 0.9641 100 0.278 Contact Map
3vnxA 6 0.9581 100 0.285 Contact Map
3wnwA 6 0.9641 100 0.294 Contact Map
1s3qA 6 0.9701 100 0.302 Contact Map
1eumA 6 0.9641 100 0.303 Contact Map
3kxuA 6 0.8743 100 0.308 Contact Map
2cihA 6 0.9581 100 0.314 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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