GREMLIN Database
RIMJ - Ribosomal-protein-alanine acetyltransferase
UniProt: P0A948 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10851
Length: 194 (170)
Sequences: 19802 (15182)
Seq/√Len: 1164.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
122_F158_R2.7041.00
143_A156_L2.6171.00
21_R81_F2.5941.00
82_D85_E2.4971.00
21_R27_D2.2981.00
14_T83_P2.2221.00
164_E184_A2.1841.00
17_R123_E2.1441.00
163_K181_V2.1091.00
163_K166_Y2.1021.00
105_C138_I2.0581.00
145_Y153_G2.0471.00
94_F132_M2.0461.00
15_T127_A2.0041.00
39_R113_Q1.9601.00
145_Y156_L1.9101.00
153_G157_A1.9051.00
15_T123_E1.8831.00
154_D157_A1.8651.00
130_R134_R1.8241.00
107_L125_L1.8171.00
79_G88_I1.7881.00
129_I161_F1.7581.00
23_V79_G1.6931.00
29_W56_P1.6871.00
166_Y181_V1.6741.00
19_V83_P1.6391.00
37_E113_Q1.6261.00
129_I141_I1.6151.00
28_A60_Q1.6101.00
153_G181_V1.6041.00
112_G115_W1.5951.00
30_R88_I1.5881.00
139_H169_D1.5781.00
92_A124_A1.5661.00
127_A130_R1.5291.00
125_L159_L1.5291.00
147_P179_D1.5261.00
172_L177_W1.5261.00
81_F86_K1.5261.00
153_G163_K1.5211.00
55_Y58_G1.5091.00
56_P60_Q1.4821.00
111_I121_M1.4721.00
62_R66_I1.4331.00
25_D64_G1.3841.00
157_A163_K1.3791.00
150_K153_G1.3741.00
80_L111_I1.3471.00
80_L124_A1.3451.00
14_T19_V1.3431.00
82_D89_I1.3221.00
13_L127_A1.3111.00
140_R184_A1.2951.00
153_G183_T1.2841.00
122_F155_L1.2821.00
92_A128_A1.2701.00
19_V81_F1.2491.00
139_H177_W1.2451.00
89_I115_W1.2431.00
131_Y135_T1.2411.00
30_R87_E1.2211.00
109_Y156_L1.2171.00
170_Y180_H1.2101.00
147_P166_Y1.2061.00
148_H178_R1.1971.00
167_A182_L1.1911.00
87_E115_W1.1721.00
82_D120_L1.1701.00
32_A56_P1.1431.00
68_E72_Q1.1341.00
28_A63_L1.1301.00
87_E114_K1.1301.00
132_M141_I1.1161.00
121_M155_L1.0881.00
60_Q64_G1.0801.00
91_V110_S1.0761.00
116_Q151_R1.0681.00
106_Y144_N1.0681.00
109_Y152_S1.0641.00
132_M136_Q1.0581.00
34_Y112_G1.0511.00
131_Y136_Q1.0491.00
15_T18_L1.0431.00
145_Y183_T1.0381.00
25_D60_Q1.0351.00
34_Y110_S1.0261.00
13_L131_Y1.0211.00
113_Q116_Q1.0211.00
28_A56_P1.0191.00
13_L20_V1.0071.00
78_F128_A1.0041.00
163_K183_T1.0041.00
12_R19_V0.9991.00
98_V102_F0.9951.00
122_F126_T0.9931.00
30_R33_D0.9881.00
169_D179_D0.9861.00
139_H187_T0.9851.00
104_A142_M0.9741.00
78_F131_Y0.9681.00
166_Y179_D0.9661.00
32_A36_A0.9611.00
82_D87_E0.9601.00
140_R164_E0.9591.00
129_I185_L0.9581.00
82_D118_K0.9461.00
143_A161_F0.9421.00
155_L159_L0.9391.00
37_E114_K0.9361.00
81_F88_I0.9331.00
37_E112_G0.9321.00
147_P181_V0.9091.00
150_K154_D0.9081.00
19_V86_K0.9081.00
117_G151_R0.9051.00
61_A65_M0.8961.00
126_T130_R0.8921.00
156_L161_F0.8921.00
146_M178_R0.8901.00
23_V91_V0.8901.00
129_I159_L0.8891.00
25_D67_N0.8871.00
168_K184_A0.8831.00
69_F74_S0.8821.00
94_F128_A0.8751.00
33_D112_G0.8741.00
27_D81_F0.8731.00
168_K179_D0.8721.00
87_E112_G0.8701.00
122_F159_L0.8631.00
32_A59_W0.8551.00
161_F185_L0.8541.00
18_L120_L0.8521.00
132_M138_I0.8411.00
126_T159_L0.8271.00
104_A140_R0.8251.00
123_E127_A0.8241.00
115_W118_K0.8181.00
18_L124_A0.8181.00
137_H187_T0.8171.00
25_D28_A0.8151.00
111_I120_L0.8131.00
103_H172_L0.7971.00
104_A170_Y0.7961.00
28_A32_A0.7951.00
103_H177_W0.7841.00
109_Y121_M0.7761.00
82_D115_W0.7751.00
152_S156_L0.7741.00
35_Y110_S0.7711.00
45_W146_M0.7711.00
69_F75_A0.7651.00
42_L116_Q0.7641.00
30_R112_G0.7611.00
172_L176_Q0.7571.00
33_D37_E0.7501.00
39_R44_P0.7431.00
144_N167_A0.7411.00
29_W33_D0.7411.00
57_S60_Q0.7401.00
168_K186_T0.7331.00
80_L92_A0.7301.00
33_D87_E0.7301.00
140_R186_T0.7301.00
117_G122_F0.7281.00
150_K157_A0.7201.00
61_A64_G0.7201.00
45_W148_H0.7191.00
58_G61_A0.7171.00
144_N180_H0.7161.00
106_Y142_M0.7141.00
15_T20_V0.7131.00
33_D114_K0.7121.00
167_A170_Y0.7071.00
77_Y93_N0.7071.00
21_R79_G0.7011.00
17_R119_G0.6971.00
164_E168_K0.6931.00
22_L70_H0.6871.00
157_A183_T0.6851.00
80_L120_L0.6851.00
145_Y181_V0.6761.00
117_G154_D0.6711.00
16_D123_E0.6661.00
43_K50_D0.6631.00
146_M173_I0.6621.00
145_Y152_S0.6541.00
169_D177_W0.6541.00
125_L155_L0.6481.00
48_V51_E0.6461.00
59_W63_L0.6381.00
57_S61_A0.6371.00
43_K46_E0.6361.00
151_R154_D0.6341.00
154_D158_R0.6341.00
105_C132_M0.6341.00
64_G68_E0.6311.00
122_F151_R0.6301.00
37_E116_Q0.6221.00
59_W62_R0.6201.00
148_H176_Q0.6191.00
109_Y125_L0.6191.00
42_L110_S0.6181.00
103_H139_H0.6101.00
39_R116_Q0.6101.00
143_A152_S0.6091.00
109_Y155_L0.6081.00
80_L90_G0.6031.00
89_I120_L0.5991.00
92_A125_L0.5991.00
66_I77_Y0.5981.00
94_F105_C0.5941.00
147_P153_G0.5941.00
88_I91_V0.5901.00
169_D186_T0.5851.00
22_L67_N0.5811.00
21_R24_H0.5801.00
171_L180_H0.5801.00
18_L123_E0.5781.00
34_Y88_I0.5671.00
46_E49_R0.5641.00
46_E110_S0.5611.00
111_I115_W0.5601.00
24_H27_D0.5561.00
172_L175_G0.5561.00
142_M170_Y0.5551.00
159_L185_L0.5531.00
111_I116_Q0.5521.00
103_H137_H0.5511.00
144_N182_L0.5491.00
142_M167_A0.5481.00
162_E168_K0.5461.00
51_E59_W0.5421.00
107_L141_I0.5401.00
80_L121_M0.5391.00
95_S106_Y0.5381.00
140_R170_Y0.5301.00
169_D187_T0.5291.00
96_N105_C0.5271.00
120_L123_E0.5241.00
167_A184_A0.5221.00
105_C141_I0.5221.00
70_H76_F0.5221.00
129_I133_Q0.5201.00
173_I176_Q0.5191.00
30_R81_F0.5181.00
117_G155_L0.5141.00
97_V105_C0.5091.00
155_L158_R0.5061.00
130_R135_T0.5061.00
65_M69_F0.5051.00
93_N108_G0.5031.00
156_L183_T0.5001.00
75_A93_N0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3pzjA 2 0.9433 100 0.31 Contact Map
2vzyA 3 0.8711 100 0.322 Contact Map
1yreA 2 0.9124 100 0.331 Contact Map
1nslA 3 0.9227 100 0.331 Contact Map
2z10A 2 0.9227 100 0.341 Contact Map
2fckA 2 0.8918 100 0.341 Contact Map
3r9fA 1 0.9278 100 0.342 Contact Map
3igrA 2 0.9433 100 0.345 Contact Map
3tcvA 2 0.9588 100 0.366 Contact Map
1s7kA 2 0.8144 100 0.368 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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