GREMLIN Database
BAMA - Outer membrane protein assembly factor BamA
UniProt: P0A940 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12676
Length: 810 (732)
Sequences: 2096 (1424)
Seq/√Len: 52.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
329_N332_D5.3291.00
490_F510_G5.1841.00
396_E419_K5.1021.00
631_G716_L4.9651.00
269_S336_K4.9111.00
353_R415_V4.6191.00
265_Q295_L4.5371.00
197_F226_L4.3601.00
182_I193_L4.2071.00
491_Y509_Y3.9661.00
354_F365_L3.8661.00
314_R380_D3.8481.00
264_D333_K3.6881.00
269_S334_T3.4531.00
350_R413_D3.3831.00
223_L258_V3.3831.00
488_R514_T3.3291.00
443_G459_N3.3271.00
329_N336_K3.2931.00
612_T652_F3.2781.00
531_Y568_D3.2061.00
486_G514_T3.0581.00
77_V86_V3.0291.00
99_F110_L2.9501.00
270_G292_P2.9431.00
32_E87_Q2.8921.00
183_V259_N2.8781.00
241_D261_T2.8761.00
137_L151_V2.8591.00
457_G472_S2.8451.00
512_D530_G2.8391.00
720_T735_T2.8361.00
270_G336_K2.8271.00
355_E415_V2.8001.00
187_A235_Y2.7621.00
714_A741_M2.7551.00
739_W768_M2.7531.00
484_S516_G2.7471.00
46_M86_V2.7371.00
197_F258_V2.7311.00
396_E421_R2.7181.00
529_L570_F2.7071.00
445_Q457_G2.6861.00
370_R521_E2.6841.00
660_V668_I2.6691.00
627_W718_F2.6641.00
181_N257_T2.6101.00
154_V168_V2.5461.00
188_F229_Y2.5071.00
454_Y473_V2.5041.00
272_E338_R2.4671.00
227_R231_L2.4631.00
355_E417_K2.4511.00
100_S168_V2.4281.00
597_G611_V2.4161.00
182_I194_I2.4111.00
768_M792_K2.4011.00
183_V257_T2.3541.00
454_Y475_N2.3531.00
475_N478_F2.3521.00
232_D299_T2.3421.00
95_A164_D2.3271.00
274_S338_R2.3221.00
429_G441_Q2.3201.00
393_G421_R2.2671.00
787_Y800_E2.2671.00
232_D297_N2.2651.00
785_F802_F2.2611.00
185_N190_T2.2391.00
194_I201_D2.2371.00
239_N261_T2.2151.00
55_N58_D2.2121.00
78_L87_Q2.1801.00
107_D111_K2.1471.00
638_G646_M2.1131.00
237_R330_D2.1061.00
34_L42_A2.0991.00
593_V613_L2.0951.00
490_F532_V2.0911.00
582_D588_T2.0901.00
237_R266_Y2.0861.00
578_Y591_S2.0831.00
311_L315_Y2.0771.00
526_R575_G2.0711.00
523_N576_W2.0661.00
267_K295_L2.0611.00
530_G571_T2.0581.00
403_Q415_V2.0401.00
125_L130_I2.0391.00
722_T735_T2.0341.00
329_N334_T2.0271.00
28_D83_T2.0061.00
32_E85_L2.0001.00
48_V84_L1.9961.00
386_K390_N1.9841.00
637_Y710_A1.9821.00
350_R406_P1.9601.00
319_Y347_F1.9491.00
52_D58_D1.9250.99
74_D89_K1.9220.99
206_W209_V1.9180.99
427_N443_G1.9130.99
76_R87_Q1.9030.99
770_A791_F1.8970.99
177_I199_L1.8960.99
193_L226_L1.8800.99
41_A45_S1.8790.99
26_V48_V1.8770.99
444_V458_I1.8530.99
632_R715_S1.8520.99
382_V414_V1.8500.99
48_V62_T1.8450.99
783_L806_I1.8350.99
485_L515_L1.8350.99
574_Y597_G1.8230.99
79_R82_D1.8170.99
29_I50_T1.8160.99
281_S285_E1.7990.99
654_A744_V1.7920.99
533_H568_D1.7910.99
772_I787_Y1.7910.99
327_E336_K1.7890.99
141_Y171_E1.7590.99
767_R797_D1.7520.99
156_T164_D1.7390.99
203_V206_W1.7340.99
716_L741_M1.7310.99
156_T166_K1.7280.99
31_F42_A1.7280.99
27_K82_D1.7220.99
299_T303_K1.7160.99
636_G652_F1.7060.99
672_A702_S1.7010.99
528_G573_N1.7000.99
384_Q521_E1.6950.99
54_V59_I1.6860.99
134_E153_A1.6840.99
350_R407_G1.6790.99
608_Y650_E1.6760.99
787_Y801_Q1.6660.99
237_R328_I1.6250.98
371_Q382_V1.6250.98
276_N343_A1.6220.98
593_V615_T1.6060.98
306_D310_K1.6050.98
350_R411_Q1.5980.98
314_R378_G1.5980.98
229_Y233_R1.5850.98
59_I77_V1.5780.98
478_F485_L1.5780.98
268_L271_V1.5740.98
102_N110_L1.5680.98
370_R388_R1.5670.98
736_S773_A1.5670.98
31_F88_V1.5560.98
182_I185_N1.5510.98
191_D195_S1.5500.98
102_N107_D1.5480.98
220_A223_L1.5460.98
400_T416_Y1.5360.97
108_D111_K1.5360.97
708_G744_V1.5320.97
430_I440_F1.5310.97
360_S420_E1.5300.97
99_F167_L1.5290.97
368_E477_Y1.5280.97
133_I167_L1.5060.97
96_S164_D1.5010.97
98_T166_K1.4870.97
325_M340_N1.4830.97
73_E89_K1.4790.97
575_G596_T1.4710.97
296_Y301_V1.4700.97
622_D627_W1.4590.97
190_T194_I1.4560.96
370_R384_Q1.4490.96
573_N596_T1.4490.96
185_N262_E1.4460.96
150_S170_Q1.4390.96
283_E311_L1.4380.96
472_S488_R1.4350.96
23_G53_T1.4290.96
268_L290_I1.4270.96
30_H83_T1.4210.96
527_A574_Y1.4160.96
125_L163_V1.4150.96
94_I165_L1.4130.96
178_Q253_G1.4050.96
99_F102_N1.4020.96
596_T612_T1.3990.96
447_D455_A1.3980.96
310_K383_D1.3870.95
102_N171_E1.3830.95
737_F772_I1.3510.95
456_V471_L1.3490.95
179_Q255_Y1.3490.95
230_Y262_E1.3480.95
739_W770_A1.3460.95
399_D417_K1.3440.94
202_E212_R1.3410.94
248_T252_K1.3400.94
424_G446_Q1.3370.94
359_T446_Q1.3360.94
397_T419_K1.3300.94
99_F111_K1.3250.94
109_M112_Q1.3230.94
39_V43_L1.3170.94
378_G381_L1.3110.94
591_S617_T1.3100.94
30_H80_D1.3030.94
352_I373_E1.3010.93
431_G439_S1.3000.93
630_L719_I1.2990.93
357_N362_D1.2980.93
516_G526_R1.2970.93
388_R521_E1.2940.93
467_T493_D1.2900.93
736_S775_Q1.2880.93
102_N141_Y1.2810.93
449_W471_L1.2790.93
474_T486_G1.2770.93
477_Y482_G1.2720.93
459_N470_E1.2690.93
768_M791_F1.2570.92
235_Y317_Y1.2540.92
471_L489_L1.2540.92
354_F366_R1.2530.92
384_Q522_Y1.2520.92
106_K109_M1.2430.92
346_R376_W1.2400.92
654_A713_V1.2380.92
449_W456_V1.2380.92
185_N230_Y1.2370.92
580_K591_S1.2360.92
426_F444_V1.2350.92
178_Q255_Y1.2330.91
189_T192_E1.2200.91
226_L229_Y1.2190.91
273_V285_E1.2140.91
778_S781_G1.2090.91
368_E388_R1.2080.91
153_A167_L1.2070.91
557_S560_D1.2050.91
268_L337_L1.1970.90
661_R740_D1.1920.90
365_L395_F1.1900.90
135_K138_E1.1860.90
282_A286_Q1.1840.90
370_R385_G1.1840.90
581_L592_R1.1770.89
786_S803_Q1.1760.89
654_A660_V1.1730.89
100_S166_K1.1720.89
225_T228_S1.1710.89
512_D528_G1.1650.89
138_E150_S1.1620.89
663_F792_K1.1600.89
34_L39_V1.1600.89
559_S564_S1.1560.89
594_N614_D1.1550.89
27_K81_G1.1540.89
469_A610_K1.1540.89
26_V54_V1.1540.89
525_L576_W1.1510.88
493_D507_K1.1470.88
636_G711_M1.1400.88
79_R84_L1.1330.88
570_F603_G1.1330.88
767_R794_Y1.1290.87
139_D143_S1.1290.87
592_R616_A1.1290.87
313_G379_S1.1270.87
266_Y333_K1.1260.87
29_I46_M1.1250.87
529_L602_P1.1200.87
406_P413_D1.1140.87
614_D634_R1.1140.87
103_K291_E1.1140.87
362_D366_R1.1100.87
135_K139_D1.1070.86
63_I77_V1.1060.86
558_T562_D1.1060.86
559_S563_N1.1040.86
224_E227_R1.1030.86
248_T251_K1.1010.86
365_L418_V1.0990.86
304_M339_V1.0970.86
635_W712_A1.0970.86
429_G579_N1.0950.86
401_D417_K1.0840.85
634_R711_M1.0840.85
472_S486_G1.0810.85
110_L478_F1.0800.85
360_S392_L1.0780.85
530_G570_F1.0770.85
196_H229_Y1.0750.85
59_I256_V1.0740.85
99_F114_L1.0720.85
428_F442_A1.0700.84
533_H566_K1.0690.84
284_I308_I1.0680.84
46_M62_T1.0650.84
80_D85_L1.0590.84
312_L343_A1.0550.84
772_I789_Q1.0550.84
30_H85_L1.0540.84
218_K221_G1.0530.83
423_T446_Q1.0490.83
322_V341_V1.0490.83
27_K83_T1.0470.83
343_A440_F1.0470.83
655_G742_G1.0470.83
664_Q798_K1.0460.83
51_G317_Y1.0420.83
113_N140_F1.0410.83
371_Q416_Y1.0340.82
614_D632_R1.0340.82
47_P62_T1.0330.82
610_K650_E1.0330.82
241_D259_N1.0330.82
389_L400_T1.0320.82
488_R512_D1.0300.82
523_N578_Y1.0270.82
570_F601_I1.0260.82
654_A668_I1.0250.82
578_Y593_V1.0240.82
433_G436_S1.0210.82
395_F418_V1.0190.81
629_V716_L1.0190.81
16_A20_G1.0180.81
291_E294_E1.0170.81
528_G575_G1.0150.81
294_E300_K1.0130.81
92_P161_N1.0090.81
595_L611_V1.0090.81
582_D589_D1.0070.81
616_A632_R1.0010.80
385_G389_L1.0010.80
280_H283_E1.0010.80
199_L222_D1.0010.80
287_L308_I1.0000.80
487_G513_V0.9950.80
105_V171_E0.9940.80
529_L601_I0.9940.80
290_I339_V0.9930.80
290_I304_M0.9920.80
452_T475_N0.9910.80
507_K535_S0.9900.79
474_T514_T0.9890.79
598_K610_K0.9870.79
571_T608_Y0.9840.79
379_S383_D0.9810.79
474_T484_S0.9800.79
574_Y595_L0.9780.79
45_S69_T0.9760.78
672_A704_D0.9750.78
634_R659_T0.9750.78
579_N592_R0.9750.78
245_V256_V0.9720.78
654_A711_M0.9710.78
793_K799_A0.9670.78
789_Q801_Q0.9670.78
326_P335_V0.9650.78
54_V62_T0.9610.77
422_N572_F0.9600.77
607_E643_G0.9580.77
387_E391_R0.9560.77
185_N193_L0.9560.77
535_S566_K0.9530.77
672_A701_K0.9520.77
556_P560_D0.9520.77
273_V339_V0.9500.77
58_D61_N0.9460.76
134_E138_E0.9410.76
186_H190_T0.9410.76
248_T253_G0.9400.76
715_S740_D0.9400.76
287_L311_L0.9400.76
773_A786_S0.9390.76
669_G705_A0.9390.76
345_N409_P0.9350.75
365_L369_M0.9310.75
790_P797_D0.9270.75
212_R304_M0.9260.75
578_Y650_E0.9250.75
424_G429_G0.9230.74
469_A491_Y0.9220.74
235_Y265_Q0.9220.74
394_F453_G0.9220.74
612_T635_W0.9210.74
66_L69_T0.9210.74
150_S172_G0.9180.74
557_S561_Q0.9170.74
192_E233_R0.9140.74
200_R211_D0.9120.74
440_F460_G0.9120.74
470_E488_R0.9120.74
432_Y806_I0.9040.73
110_L140_F0.9010.73
357_N366_R0.8960.72
599_V641_L0.8930.72
238_F260_I0.8920.72
383_D387_E0.8840.71
429_G581_L0.8820.71
743_T766_I0.8800.71
305_E324_S0.8800.71
28_D50_T0.8780.71
219_L256_V0.8780.71
569_D600_T0.8760.71
726_S729_Y0.8760.71
368_E392_L0.8720.70
180_I201_D0.8700.70
432_Y437_G0.8700.70
630_L717_E0.8660.70
182_I260_I0.8610.69
773_A785_F0.8590.69
332_D336_K0.8580.69
154_V166_K0.8580.69
529_L600_T0.8570.69
657_S665_S0.8560.69
663_F666_N0.8560.69
273_V288_T0.8560.69
136_G139_D0.8550.69
447_D457_G0.8530.69
491_Y507_K0.8510.68
391_R583_R0.8510.68
536_L539_M0.8510.68
55_N268_L0.8490.68
444_V772_I0.8490.68
80_D178_Q0.8470.68
75_V85_L0.8470.68
432_Y787_Y0.8450.68
240_I260_I0.8450.68
40_G43_L0.8430.68
115_E136_G0.8390.67
710_A745_W0.8380.67
616_A630_L0.8360.67
643_G795_D0.8360.67
511_T531_Y0.8360.67
717_E775_Q0.8350.67
119_V133_I0.8350.67
247_L254_I0.8340.67
138_E142_Y0.8330.67
663_F768_M0.8330.67
743_T764_S0.8320.67
158_L161_N0.8320.67
716_L739_W0.8290.66
133_I423_T0.8280.66
443_G457_G0.8240.66
508_S534_N0.8190.65
185_N189_T0.8190.65
104_S144_V0.8170.65
479_T485_L0.8170.65
150_S248_T0.8170.65
96_S121_V0.8170.65
62_T86_V0.8160.65
483_V517_F0.8160.65
242_S256_V0.8160.65
189_T195_S0.8140.65
366_R385_G0.8130.65
529_L604_S0.8130.65
293_G628_V0.8110.65
367_R477_Y0.8110.65
708_G742_G0.8080.64
199_L219_L0.8060.64
425_S447_D0.8050.64
489_L511_T0.8030.64
736_S784_V0.8020.64
790_P800_E0.8010.64
494_F650_E0.8010.64
577_T592_R0.8000.64
726_S730_A0.8000.64
348_Y376_W0.7990.63
273_V284_I0.7990.63
529_L603_G0.7980.63
31_F43_L0.7960.63
91_R126_D0.7960.63
177_I397_T0.7950.63
25_V53_T0.7950.63
517_F527_A0.7930.63
146_K174_S0.7930.63
343_A786_S0.7920.63
271_V292_P0.7890.62
573_N598_K0.7880.62
767_R799_A0.7880.62
158_L164_D0.7860.62
193_L258_V0.7860.62
361_K715_S0.7860.62
721_P735_T0.7860.62
520_N523_N0.7860.62
656_G659_T0.7840.62
529_L572_F0.7840.62
539_M542_Q0.7840.62
352_I574_Y0.7830.62
318_A377_L0.7790.61
313_G318_A0.7790.61
633_T716_L0.7770.61
441_Q459_N0.7770.61
318_A376_W0.7760.61
577_T596_T0.7760.61
274_S340_N0.7760.61
561_Q564_S0.7750.61
402_T406_P0.7750.61
122_G618_Y0.7730.61
508_S532_V0.7730.61
229_Y238_F0.7720.61
486_G512_D0.7720.61
36_R90_E0.7710.61
568_D605_D0.7710.61
334_T780_L0.7710.61
235_Y594_N0.7700.61
574_Y611_V0.7690.60
408_S411_Q0.7690.60
347_F780_L0.7680.60
500_D503_D0.7660.60
53_T165_L0.7640.60
242_S259_N0.7640.60
70_G81_G0.7640.60
181_N255_Y0.7620.60
528_G598_K0.7620.60
621_I629_V0.7610.60
223_L240_I0.7610.60
621_I627_W0.7610.60
716_L785_F0.7600.60
600_T603_G0.7590.59
660_V740_D0.7580.59
570_F604_S0.7560.59
104_S146_K0.7540.59
182_I190_T0.7520.59
110_L120_R0.7500.59
670_P708_G0.7500.59
303_K307_D0.7490.58
106_K333_K0.7470.58
141_Y388_R0.7450.58
235_Y295_L0.7440.58
221_G225_T0.7430.58
67_F490_F0.7420.58
373_E776_W0.7420.58
663_F767_R0.7410.58
522_Y580_K0.7410.58
765_N794_Y0.7410.58
615_T631_G0.7410.58
395_F423_T0.7410.58
483_V515_L0.7400.57
36_R93_T0.7400.57
656_G742_G0.7390.57
430_I438_V0.7390.57
131_A134_E0.7380.57
741_M766_I0.7380.57
31_F34_L0.7380.57
556_P561_Q0.7370.57
463_N604_S0.7370.57
48_V54_V0.7360.57
624_D628_V0.7350.57
36_R41_A0.7340.57
322_V339_V0.7340.57
640_G646_M0.7330.57
194_I202_E0.7320.57
352_I398_V0.7320.57
151_V167_L0.7310.57
663_F790_P0.7300.56
519_I523_N0.7290.56
426_F774_L0.7290.56
364_V367_R0.7290.56
95_A158_L0.7280.56
305_E322_V0.7270.56
88_V97_I0.7270.56
445_Q455_A0.7270.56
199_L225_T0.7250.56
205_W209_V0.7230.56
709_N747_T0.7190.55
20_G23_G0.7190.55
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708_G743_T0.5370.37
436_S439_S0.5360.36
100_S774_L0.5360.36
483_V486_G0.5360.36
438_V466_Q0.5350.36
75_V412_V0.5350.36
185_N772_I0.5350.36
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260_I666_N0.5340.36
272_E336_K0.5340.36
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147_Y807_G0.5330.36
193_L284_I0.5320.36
119_V788_A0.5320.36
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99_F169_F0.5310.36
197_F225_T0.5310.36
337_L610_K0.5310.36
647_P659_T0.5300.36
467_T491_Y0.5300.36
345_N489_L0.5290.36
432_Y645_E0.5290.36
42_A88_V0.5290.36
64_R422_N0.5280.36
102_N169_F0.5280.36
26_V39_V0.5280.36
776_W782_P0.5270.36
167_L463_N0.5270.36
30_H46_M0.5270.36
311_L314_R0.5270.36
325_M338_R0.5270.36
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290_I294_E0.5230.35
77_V84_L0.5230.35
797_D800_E0.5230.35
365_L393_G0.5220.35
55_N68_A0.5220.35
98_T629_V0.5220.35
31_F86_V0.5220.35
431_G807_G0.5220.35
560_D564_S0.5220.35
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367_R510_G0.5210.35
331_A633_T0.5210.35
78_L172_G0.5210.35
78_L358_D0.5210.35
589_D616_A0.5200.35
28_D34_L0.5200.35
233_R432_Y0.5200.35
55_N189_T0.5200.35
505_T537_S0.5190.35
532_V657_S0.5180.35
159_P579_N0.5180.35
44_L715_S0.5180.35
368_E384_Q0.5180.35
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188_F230_Y0.5170.35
166_K169_F0.5170.35
40_G52_D0.5170.35
98_T164_D0.5160.35
256_V537_S0.5160.35
186_H264_D0.5160.35
511_T515_L0.5160.35
790_P793_K0.5160.35
346_R669_G0.5150.34
146_K171_E0.5150.34
407_G413_D0.5150.34
531_Y634_R0.5150.34
96_S807_G0.5150.34
573_N783_L0.5140.34
94_I608_Y0.5140.34
255_Y297_N0.5140.34
430_I442_A0.5140.34
31_F75_V0.5140.34
134_E152_K0.5130.34
94_I641_L0.5130.34
444_V595_L0.5120.34
89_K633_T0.5120.34
450_L454_Y0.5110.34
229_Y640_G0.5110.34
35_Q120_R0.5110.34
110_L204_P0.5110.34
37_V71_N0.5100.34
648_F651_N0.5100.34
102_N352_I0.5100.34
178_Q249_P0.5100.34
119_V194_I0.5100.34
653_Y742_G0.5090.34
26_V399_D0.5090.34
105_V151_V0.5090.34
608_Y780_L0.5080.34
449_W454_Y0.5080.34
110_L322_V0.5080.34
217_Q261_T0.5080.34
388_R400_T0.5080.34
125_L641_L0.5080.34
336_K501_L0.5060.34
285_E358_D0.5060.34
329_N333_K0.5060.34
419_K737_F0.5060.34
742_G766_I0.5060.34
289_K304_M0.5050.33
364_V392_L0.5050.33
303_K785_F0.5050.33
308_I312_L0.5050.33
59_I62_T0.5050.33
207_N212_R0.5050.33
497_D795_D0.5050.33
21_A56_D0.5050.33
295_L618_Y0.5050.33
367_R392_L0.5040.33
410_D518_P0.5030.33
50_T283_E0.5030.33
229_Y232_D0.5030.33
276_N283_E0.5020.33
204_P207_N0.5020.33
246_S255_Y0.5020.33
26_V233_R0.5020.33
472_S514_T0.5020.33
19_Y23_G0.5020.33
722_T737_F0.5010.33
195_S473_V0.5010.33
350_R375_A0.5010.33
722_T774_L0.5010.33
111_K120_R0.5010.33
17_T22_E0.5010.33
124_S127_R0.5010.33
605_D783_L0.5010.33
804_F807_G0.5000.33
26_V599_V0.5000.33
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k3bA 1 0.9346 100 0.26 Contact Map
4c00A 1 0.658 100 0.528 Contact Map
4k3cA 1 0.6494 100 0.559 Contact Map
3efcA 1 0.4025 100 0.606 Contact Map
4c4vA 1 0.5519 100 0.621 Contact Map
4ql0A 2 0.6062 100 0.66 Contact Map
2qdfA 1 0.3926 100 0.695 Contact Map
4n75A 1 0.4753 100 0.714 Contact Map
4pk1A 1 0.4691 100 0.758 Contact Map
4bzaA 1 0.2938 100 0.812 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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