GREMLIN Database
RPOC - DNA-directed RNA polymerase subunit beta'
UniProt: P0A8T7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10895
Length: 1407 (1234)
Sequences: 1275 (655)
Seq/√Len: 18.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
31_R106_E7.5111.00
138_V145_V5.4881.00
177_D180_M5.1401.00
811_E890_T4.9361.00
422_L434_I4.9021.00
683_I686_W4.5091.00
186_Q240_T4.4971.00
885_V894_V4.1301.00
542_A574_V4.1171.00
537_Y574_V4.0381.00
421_V439_P3.9121.00
682_V686_W3.6741.00
649_K696_A3.6481.00
378_K474_L3.6451.00
34_S104_H3.6091.00
749_K756_E3.5861.00
984_L993_E3.5261.00
752_G756_E3.5111.00
193_D196_Q3.5101.00
753_S756_E3.4551.00
683_I697_M3.4311.00
1164_S1178_T3.3981.00
847_D851_P3.3791.00
537_Y552_I3.3651.00
112_A238_I3.3401.00
691_D695_K3.3071.00
1208_D1212_D3.2901.00
749_K755_I3.2610.99
664_I685_I3.2450.99
752_G755_I3.2190.99
749_K753_S3.2000.99
694_S701_L3.1650.99
1029_T1115_I3.1590.99
849_L856_I3.1460.99
549_K569_L3.1380.99
991_T994_S3.1180.99
549_K571_D3.1100.99
1228_A1231_R3.1080.99
752_G757_T3.0670.99
899_Y904_A3.0620.99
984_L987_E3.0560.99
652_E656_E3.0540.99
989_G993_E3.0390.99
812_D897_H3.0370.99
653_I689_A3.0310.99
750_P755_I3.0160.99
177_D187_A3.0040.99
520_A543_S2.9630.99
955_K1012_A2.9130.99
976_T979_N2.9030.99
656_E660_E2.8860.99
1157_A1177_I2.8730.99
859_P862_T2.8690.99
867_Q871_L2.8650.99
197_E224_L2.8460.99
749_K752_G2.8390.99
149_G152_T2.8040.98
749_K757_T2.7650.98
753_S757_T2.7640.98
760_T771_Q2.7600.98
968_N972_K2.6430.98
895_C898_C2.6330.98
899_Y903_L2.6270.98
368_L468_V2.6190.97
1080_I1085_G2.6060.97
1075_R1079_K2.5990.97
1082_D1086_N2.5970.97
522_G546_A2.5870.97
1156_L1223_L2.5800.97
858_V862_T2.5650.97
754_I757_T2.5420.97
683_I701_L2.5350.97
984_L995_Y2.5280.97
365_Q440_V2.4680.96
38_V61_I2.4430.96
681_K686_W2.4320.96
504_Q598_K2.4290.96
351_G470_V2.4230.96
477_Q481_R2.4220.96
839_V880_V2.4180.96
891_D895_C2.4130.96
750_P756_E2.3970.96
985_I991_T2.3930.96
180_M188_L2.3880.96
1090_I1093_T2.3860.96
697_M701_L2.3800.96
108_A276_N2.3780.95
694_S698_M2.3710.95
909_I913_E2.3670.95
84_I284_D2.3630.95
694_S697_M2.3510.95
681_K684_D2.3350.95
182_A238_I2.3310.95
848_V851_P2.3260.95
543_S546_A2.3180.95
644_M722_I2.2940.94
840_L901_R2.2790.94
695_K699_D2.2760.94
40_K54_D2.2710.94
657_A685_I2.2710.94
958_I1017_V2.2620.94
865_H868_W2.2560.94
985_I993_E2.2300.94
750_P757_T2.2300.94
1082_D1085_G2.2260.94
580_W583_V2.2250.94
485_M488_N2.2240.94
686_W697_M2.2210.93
442_I448_Q2.2120.93
521_K546_A2.2050.93
690_N694_S2.2020.93
353_S447_I2.1980.93
692_R695_K2.1960.93
179_K187_A2.1940.93
474_L477_Q2.1830.93
749_K754_I2.1820.93
982_L986_D2.1740.93
1040_M1107_V2.1730.93
1102_P1105_A2.1550.92
545_H639_V2.1470.92
894_V898_C2.1370.92
377_F470_V2.1350.92
678_R701_L2.1290.92
594_Q604_M2.1230.92
1235_N1239_D2.1210.92
36_G60_R2.1100.92
1012_A1015_E2.0990.91
997_V1001_A2.0980.91
1179_P1185_P2.0950.91
1027_V1030_E2.0860.91
1002_V1019_N2.0760.91
540_G546_A2.0610.91
697_M702_Q2.0570.90
542_A548_V2.0310.90
975_I980_T2.0300.90
980_T984_L2.0290.90
1233_I1237_V2.0260.90
844_T858_V2.0250.90
578_I631_Y2.0200.90
1005_K1015_E2.0150.90
750_P753_S2.0100.89
751_D755_I2.0040.89
153_N172_F1.9840.89
514_T544_L1.9800.89
1084_Q1094_D1.9620.88
60_R624_I1.9610.88
156_R191_S1.9460.88
269_Y306_L1.9420.88
683_I687_A1.9400.88
987_E993_E1.9390.88
682_V701_L1.9360.88
1209_V1212_D1.9350.87
801_V917_V1.9210.87
750_P754_I1.9150.87
513_M631_Y1.9140.87
1009_E1015_E1.9120.87
699_D702_Q1.9120.87
691_D697_M1.9110.87
1072_K1079_K1.9040.87
855_D871_L1.9040.87
651_H655_S1.9020.87
1048_R1059_L1.8990.86
751_D756_E1.8950.86
85_C88_C1.8640.85
863_L868_W1.8580.85
500_I621_A1.8580.85
958_I1005_K1.8580.85
1158_E1222_R1.8570.85
818_E889_D1.8530.85
656_E692_R1.8480.85
1208_D1211_S1.8340.84
976_T981_E1.8340.84
682_V697_M1.8300.84
821_M1227_H1.8240.84
861_N868_W1.7870.83
973_L980_T1.7860.83
688_A692_R1.7830.83
1080_I1088_V1.7750.82
382_Y386_E1.7730.82
1051_D1054_T1.7730.82
844_T848_V1.7710.82
521_K543_S1.7530.82
882_V885_V1.7410.81
1237_V1262_R1.7370.81
507_V601_I1.7360.81
370_K444_G1.7340.81
809_V885_V1.7300.81
1171_G1175_L1.7120.80
1233_I1257_V1.7110.80
868_W871_L1.7070.80
682_V695_K1.7000.79
533_A548_V1.6980.79
524_G546_A1.6970.79
978_R981_E1.6960.79
180_M187_A1.6840.79
818_E1227_H1.6790.79
526_V549_K1.6750.78
492_S495_N1.6730.78
1110_E1113_V1.6600.78
985_I996_K1.6580.78
518_V547_R1.6560.78
845_A1233_I1.6560.78
1085_G1090_I1.6520.77
211_E215_K1.6380.77
981_E985_I1.6360.77
130_M145_V1.6300.76
861_N864_L1.6280.76
1172_K1175_L1.6270.76
1032_S1117_S1.6250.76
843_V908_I1.6140.76
310_G313_G1.6050.75
24_L116_F1.6000.75
203_E207_E1.5950.75
691_D694_S1.5940.75
690_N701_L1.5930.75
371_K404_E1.5920.75
594_Q600_A1.5850.74
696_A701_L1.5780.74
864_L869_C1.5750.74
894_V899_Y1.5640.73
751_D757_T1.5590.73
152_T158_Q1.5550.73
895_C899_Y1.5540.73
152_T155_E1.5470.73
678_R1179_P1.5460.73
363_L486_S1.5450.72
1072_K1075_R1.5450.72
128_L131_P1.5420.72
608_C764_R1.5400.72
457_Y473_T1.5340.72
167_D171_E1.5340.72
683_I695_K1.5260.71
519_N524_G1.5250.71
527_L542_A1.5240.71
1071_G1074_L1.5170.71
686_W701_L1.5120.71
608_C1177_I1.5120.71
1076_P1080_I1.5120.71
812_D911_K1.5080.71
865_H870_D1.5060.70
1006_G1009_E1.5050.70
986_D991_T1.5030.70
985_I989_G1.5020.70
266_N575_G1.5010.70
239_L242_L1.4920.70
386_E400_M1.4910.70
1051_D1055_G1.4890.70
1074_L1079_K1.4860.69
27_P240_T1.4850.69
1082_D1091_P1.4810.69
845_A849_L1.4810.69
1159_I1163_V1.4780.69
866_E901_R1.4760.69
998_P1001_A1.4750.69
858_V868_W1.4740.69
682_V691_D1.4740.69
898_C904_A1.4740.69
368_L1214_P1.4730.69
1107_V1111_D1.4720.69
154_L158_Q1.4710.69
1160_S1205_E1.4700.69
131_P134_D1.4680.68
999_Y1005_K1.4660.68
976_T985_I1.4630.68
1269_A1275_L1.4610.68
987_E991_T1.4610.68
1086_N1090_I1.4600.68
1174_R1177_I1.4530.68
847_D850_K1.4510.68
985_I995_Y1.4500.67
988_F995_Y1.4480.67
977_S981_E1.4460.67
396_A949_S1.4450.67
678_R683_I1.4440.67
494_A644_M1.4410.67
31_R240_T1.4400.67
1166_G1172_K1.4350.67
534_E581_M1.4340.67
861_N897_H1.4280.66
1005_K1017_V1.4270.66
986_D995_Y1.4250.66
844_T862_T1.4240.66
991_T995_Y1.4230.66
51_P55_G1.4220.66
31_R394_I1.4190.66
811_E891_D1.4180.66
733_S1135_T1.4170.66
891_D898_C1.4130.65
1145_F1151_K1.4120.65
378_K477_Q1.4080.65
1001_A1008_G1.4070.65
683_I690_N1.4050.65
155_E158_Q1.4040.65
113_H117_L1.4030.65
1139_P1143_D1.4020.65
34_S56_L1.3990.65
1216_A1273_D1.3970.64
165_Y169_L1.3930.64
683_I702_Q1.3890.64
639_V1216_A1.3880.64
989_G995_Y1.3870.64
1071_G1079_K1.3860.64
1220_I1232_Y1.3830.64
583_V620_F1.3800.64
821_M879_A1.3800.64
1141_V1145_F1.3700.63
1169_T1172_K1.3680.63
997_V1004_A1.3620.62
991_T996_K1.3610.62
683_I699_D1.3610.62
1012_A1016_T1.3600.62
1087_D1092_G1.3590.62
988_F991_T1.3570.62
519_N523_E1.3570.62
993_E996_K1.3560.62
1158_E1186_Y1.3520.62
423_L468_V1.3460.62
242_L307_L1.3440.61
1001_A1016_T1.3430.61
980_T985_I1.3420.61
984_L1019_N1.3410.61
960_L963_V1.3330.61
514_T579_L1.3330.61
608_C760_T1.3320.61
400_M809_V1.3310.61
803_V1259_Q1.3300.61
602_S629_F1.3270.60
457_Y635_S1.3260.60
690_N693_V1.3240.60
660_E663_E1.3230.60
384_K387_L1.3210.60
1168_E1173_R1.3200.60
683_I688_A1.3200.60
1000_G1005_K1.3200.60
976_T980_T1.3190.60
506_V629_F1.3160.60
524_G553_T1.3160.60
1010_Q1014_G1.3130.60
1000_G1009_E1.3120.59
839_V872_L1.3080.59
678_R833_E1.3080.59
981_E1247_K1.3030.59
678_R686_W1.3030.59
846_E881_K1.3020.59
351_G377_F1.2990.59
197_E200_Q1.2980.59
188_L192_M1.2920.58
836_R869_C1.2910.58
826_I829_G1.2890.58
902_D905_R1.2870.58
198_C228_V1.2790.57
492_S633_A1.2780.57
84_I1104_K1.2770.57
864_L872_L1.2750.57
326_S329_D1.2730.57
665_Q669_Q1.2720.57
1046_I1130_G1.2720.57
997_V1010_Q1.2720.57
524_G537_Y1.2710.57
418_E590_S1.2680.57
1168_E1171_G1.2670.57
283_L292_V1.2660.57
515_R1171_G1.2630.56
1001_A1010_Q1.2590.56
696_A699_D1.2580.56
248_D362_R1.2560.56
1005_K1008_G1.2530.56
180_M185_I1.2530.56
1082_D1090_I1.2500.56
678_R689_A1.2500.56
45_N52_E1.2470.56
1179_P1186_Y1.2430.55
1089_L1092_G1.2430.55
359_P759_I1.2420.55
149_G173_G1.2400.55
31_R241_V1.2370.55
683_I694_S1.2360.55
20_I966_V1.2340.55
363_L500_I1.2330.55
980_T983_K1.2290.54
513_M640_G1.2270.54
1087_D1090_I1.2270.54
79_K382_Y1.2260.54
988_F993_E1.2250.54
686_W690_N1.2240.54
1001_A1005_K1.2220.54
1003_L1007_D1.2210.54
413_D539_S1.2210.54
862_T868_W1.2180.54
941_A1244_Q1.2110.53
986_D993_E1.2100.53
605_L624_I1.2080.53
583_V587_L1.2050.53
1078_L1081_V1.2040.53
448_Q949_S1.2040.53
862_T866_E1.2030.53
1130_G1134_I1.1970.52
1073_D1079_K1.1950.52
986_D990_R1.1930.52
1089_L1093_T1.1920.52
976_T1233_I1.1910.52
149_G154_L1.1910.52
945_A1247_K1.1870.52
686_W702_Q1.1860.52
952_V955_K1.1840.52
868_W872_L1.1830.52
718_S793_S1.1820.51
816_T889_D1.1800.51
612_L948_S1.1790.51
175_E180_M1.1750.51
382_Y829_G1.1740.51
391_A396_A1.1720.51
114_I316_I1.1700.51
870_D874_E1.1690.51
400_M405_E1.1680.51
660_E701_L1.1660.50
591_I792_N1.1650.50
110_P113_H1.1640.50
180_M189_L1.1610.50
695_K701_L1.1610.50
1050_T1057_S1.1600.50
947_E951_Q1.1590.50
1266_I1274_F1.1580.50
271_R353_S1.1580.50
655_S659_A1.1560.50
830_D952_V1.1550.50
607_T839_V1.1550.50
694_S734_A1.1520.50
1005_K1013_G1.1510.50
389_G416_I1.1510.50
1005_K1009_E1.1510.50
413_D486_S1.1500.49
55_G107_L1.1490.49
198_C224_L1.1450.49
687_A694_S1.1410.49
641_I689_A1.1390.49
177_D185_I1.1390.49
823_T879_A1.1370.49
1083_A1086_N1.1370.49
533_A577_A1.1360.49
1139_P1144_L1.1340.48
157_Q188_L1.1340.48
146_V160_L1.1320.48
403_R637_A1.1320.48
1134_I1141_V1.1300.48
678_R681_K1.1290.48
80_H93_T1.1270.48
1166_G1171_G1.1270.48
579_L584_P1.1270.48
525_M541_L1.1250.48
1144_L1150_P1.1250.48
992_K996_K1.1250.48
38_V103_G1.1240.48
271_R274_N1.1240.48
545_H627_T1.1230.48
844_T864_L1.1200.48
117_L212_T1.1170.47
442_I646_I1.1150.47
192_M195_E1.1150.47
1048_R1188_E1.1140.47
87_K591_I1.1140.47
36_G61_I1.1140.47
864_L868_W1.1110.47
751_D754_I1.1110.47
517_C631_Y1.1100.47
306_L759_I1.1100.47
603_K959_K1.1080.47
255_L261_A1.1070.47
1046_I1110_E1.1020.46
1085_G1094_D1.0980.46
1072_K1081_V1.0970.46
275_R302_A1.0970.46
422_L636_G1.0960.46
205_L214_R1.0930.46
685_I688_A1.0890.46
946_A1276_E1.0890.46
836_R952_V1.0890.46
863_L867_Q1.0890.46
547_R593_N1.0880.46
1074_L1078_L1.0880.46
1238_Q1242_R1.0880.46
1026_P1030_E1.0860.45
891_D899_Y1.0830.45
497_E1224_R1.0830.45
849_L854_A1.0800.45
846_E849_L1.0770.45
513_M627_T1.0770.45
685_I1228_A1.0770.45
1075_R1078_L1.0750.45
1191_P1249_N1.0750.45
665_Q833_E1.0740.45
1036_R1155_I1.0720.45
849_L908_I1.0710.45
940_A943_R1.0710.45
194_L224_L1.0710.45
156_R167_D1.0650.44
607_T611_I1.0650.44
597_G600_A1.0640.44
630_A634_R1.0630.44
825_V833_E1.0630.44
515_R624_I1.0630.44
1040_M1045_T1.0620.44
1037_F1117_S1.0620.44
331_I360_Y1.0560.44
16_E331_I1.0550.44
442_I644_M1.0550.44
594_Q812_D1.0530.43
1084_Q1087_D1.0530.43
457_Y983_K1.0520.43
959_K965_S1.0510.43
1145_F1150_P1.0510.43
978_R986_D1.0500.43
384_K388_R1.0500.43
1169_T1175_L1.0500.43
164_Q167_D1.0490.43
989_G996_K1.0490.43
689_A694_S1.0470.43
804_A1237_V1.0450.43
683_I698_M1.0440.43
979_N986_D1.0440.43
975_I995_Y1.0430.43
516_D547_R1.0410.43
1032_S1116_S1.0400.43
268_L370_K1.0400.43
351_G372_M1.0390.43
549_K1237_V1.0380.43
678_R697_M1.0370.42
888_C898_C1.0360.42
1003_L1009_E1.0330.42
351_G1253_I1.0310.42
972_K981_E1.0300.42
239_L887_S1.0290.42
460_D463_G1.0260.42
1075_R1080_I1.0250.42
242_L1002_V1.0240.42
858_V864_L1.0240.42
1028_I1111_D1.0230.42
1240_V1260_M1.0220.42
1076_P1079_K1.0220.42
621_A1230_T1.0210.41
457_Y721_S1.0210.41
272_V340_Q1.0200.41
695_K702_Q1.0190.41
366_C740_L1.0190.41
863_L901_R1.0180.41
113_H116_F1.0140.41
1131_T1142_A1.0140.41
753_S1233_I1.0120.41
396_A735_A1.0120.41
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1195_Q1211_S0.5440.18
539_S951_Q0.5430.18
411_I945_A0.5430.18
164_Q1047_T0.5430.18
539_S552_I0.5420.18
947_E1197_N0.5420.18
568_S581_M0.5420.18
1134_I1148_R0.5420.18
874_E1032_S0.5410.18
24_L483_L0.5410.18
633_A764_R0.5410.18
211_E917_V0.5410.18
1197_N1215_E0.5410.18
260_F273_I0.5400.18
351_G513_M0.5400.18
243_P739_Q0.5400.18
658_E1016_T0.5400.18
861_N871_L0.5400.18
681_K688_A0.5390.17
526_V546_A0.5390.17
582_I870_D0.5390.17
316_I382_Y0.5380.17
43_T269_Y0.5380.17
717_V954_N0.5370.17
1038_T1111_D0.5370.17
178_A240_T0.5370.17
715_K718_S0.5370.17
35_F400_M0.5370.17
266_N1221_L0.5370.17
483_L800_L0.5360.17
403_R854_A0.5350.17
524_G549_K0.5350.17
1024_T1027_V0.5340.17
1071_G1081_V0.5340.17
547_R1227_H0.5340.17
550_V963_V0.5340.17
1011_V1207_G0.5340.17
858_V871_L0.5340.17
1014_G1020_W0.5330.17
64_P423_L0.5330.17
430_H935_F0.5330.17
242_L554_E0.5330.17
240_T910_N0.5320.17
252_L263_S0.5320.17
969_S976_T0.5310.17
722_I747_M0.5310.17
735_A827_E0.5310.17
985_I994_S0.5310.17
500_I644_M0.5300.17
431_R441_L0.5300.17
327_L420_P0.5290.17
1134_I1143_D0.5290.17
1138_L1151_K0.5290.17
649_K656_E0.5290.17
204_E213_K0.5290.17
956_G1237_V0.5290.17
365_Q438_E0.5270.17
390_L699_D0.5270.17
33_W39_K0.5270.17
824_P945_A0.5270.17
521_K1182_G0.5270.17
1079_K1094_D0.5270.17
599_K757_T0.5270.17
1004_A1007_D0.5270.17
411_I907_H0.5260.17
539_S632_A0.5250.17
873_E1111_D0.5250.17
243_P385_L0.5250.17
1085_G1091_P0.5250.17
242_L850_K0.5240.17
1097_A1107_V0.5240.17
422_L1015_E0.5240.17
417_R1262_R0.5240.17
1077_A1080_I0.5240.17
205_L525_M0.5240.17
309_N398_K0.5240.17
411_I944_A0.5240.17
662_A734_A0.5240.17
598_K925_E0.5230.17
418_E741_A0.5230.17
316_I902_D0.5230.17
180_M654_I0.5230.17
620_F631_Y0.5230.17
1076_P1081_V0.5230.17
1139_P1145_F0.5230.17
217_L221_I0.5220.17
1081_V1087_D0.5220.17
394_I581_M0.5220.17
649_K830_D0.5220.17
1051_D1065_A0.5210.17
654_I665_Q0.5210.17
984_L996_K0.5210.17
543_S550_V0.5210.17
122_S1248_I0.5200.17
419_H735_A0.5200.17
850_K1052_E0.5200.17
448_Q549_K0.5190.17
78_L1049_Q0.5190.17
215_K235_E0.5190.17
569_L822_M0.5190.17
548_V965_S0.5180.17
1042_D1052_E0.5180.17
653_I656_E0.5180.17
27_P1161_G0.5170.17
363_L520_A0.5170.17
828_G948_S0.5170.17
761_A963_V0.5170.17
239_L642_D0.5170.17
1164_S1171_G0.5170.17
1249_N1258_R0.5160.17
547_R945_A0.5160.17
959_K1226_V0.5160.17
610_R901_R0.5160.17
686_W694_S0.5160.17
203_E209_N0.5160.17
990_R993_E0.5150.17
155_E170_E0.5140.17
244_V303_V0.5140.17
823_T1227_H0.5140.17
1077_A1083_A0.5140.17
1167_K1172_K0.5140.17
1173_R1179_P0.5140.17
430_H505_D0.5140.17
505_D935_F0.5140.17
18_D809_V0.5140.17
284_D287_A0.5140.17
989_G994_S0.5130.17
1087_D1093_T0.5130.17
513_M621_A0.5130.17
582_I624_I0.5130.17
415_V660_E0.5130.17
771_Q833_E0.5130.17
789_K828_G0.5120.17
687_A690_N0.5120.17
1022_P1033_G0.5120.17
210_S214_R0.5120.17
894_V1183_S0.5120.17
1077_A1092_G0.5120.17
1011_V1148_R0.5110.17
836_R944_A0.5110.17
1029_T1182_G0.5110.17
180_M184_A0.5110.17
691_D1073_D0.5100.16
331_I753_S0.5100.16
1062_L1103_G0.5100.16
214_R218_T0.5100.16
117_L644_M0.5100.16
440_V987_E0.5090.16
1003_L1019_N0.5090.16
382_Y951_Q0.5090.16
145_V1176_V0.5090.16
635_S1228_A0.5090.16
957_S1010_Q0.5080.16
997_V1008_G0.5080.16
1156_L1163_V0.5080.16
997_V1011_V0.5070.16
495_N1171_G0.5070.16
1207_G1210_I0.5070.16
100_E131_P0.5060.16
390_L662_A0.5060.16
156_R159_I0.5060.16
605_L923_I0.5060.16
859_P871_L0.5060.16
945_A1224_R0.5060.16
260_F268_L0.5060.16
365_Q477_Q0.5050.16
338_F447_I0.5050.16
376_L732_G0.5050.16
1083_A1090_I0.5050.16
382_Y418_E0.5050.16
831_V870_D0.5050.16
543_S1268_N0.5050.16
1213_G1232_Y0.5040.16
390_L897_H0.5040.16
1041_I1046_I0.5040.16
259_R622_D0.5040.16
872_L1062_L0.5040.16
1076_P1118_G0.5040.16
545_H548_V0.5030.16
422_L1083_A0.5030.16
65_V81_R0.5030.16
886_V899_Y0.5030.16
1031_V1036_R0.5020.16
181_G1148_R0.5020.16
646_I722_I0.5020.16
1062_L1076_P0.5020.16
148_E1017_V0.5020.16
860_R863_L0.5010.16
1133_D1150_P0.5010.16
101_R131_P0.5010.16
1241_Y1244_Q0.5010.16
1096_P1104_K0.5000.16
830_D946_A0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1hqmD 1 0.7697 100 0.287 Contact Map
4aybA 1 0.5665 100 0.502 Contact Map
4qiwA 2 0.5544 100 0.504 Contact Map
3qqcA 1 0.2303 100 0.812 Contact Map
4qiwC 1 0.2544 100 0.845 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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