GREMLIN Database
PRMA - Ribosomal protein L11 methyltransferase
UniProt: P0A8T1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11497
Length: 293 (246)
Sequences: 2812 (2039)
Seq/√Len: 130.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
247_P251_G3.7001.00
225_D248_V3.4111.00
149_L175_A3.3531.00
143_P283_E3.2321.00
177_L184_A3.0441.00
150_Q282_K2.9001.00
167_C197_S2.5501.00
177_L209_R2.5321.00
146_S282_K2.5261.00
163_I224_A2.4791.00
117_S132_D2.4411.00
263_A286_C2.3811.00
107_R126_A2.3721.00
154_S278_P2.3461.00
260_A281_E2.2611.00
151_W289_T2.2531.00
161_T183_K2.2421.00
162_V176_A2.2221.00
98_E101_D2.1931.00
115_C130_M2.0961.00
183_K211_E2.0761.00
156_D160_K2.0381.00
157_L160_K2.0151.00
227_V247_P1.9781.00
237_R269_A1.9711.00
185_I224_A1.9701.00
264_E268_E1.9651.00
279_V288_I1.9481.00
186_G210_L1.9301.00
159_G182_A1.9291.00
151_W287_R1.9111.00
252_L291_R1.8761.00
237_R266_V1.8571.00
263_A279_V1.8421.00
97_R100_M1.7951.00
275_A291_R1.7841.00
237_R265_S1.7801.00
93_K98_E1.7771.00
263_A288_I1.7271.00
244_S274_F1.7031.00
281_E286_C1.7001.00
276_L279_V1.6841.00
247_P274_F1.6041.00
173_A210_L1.5881.00
269_A272_D1.5871.00
197_S212_L1.5831.00
263_A267_C1.5791.00
266_V269_A1.5781.00
65_D68_D1.5481.00
150_Q280_V1.5361.00
112_L149_L1.5361.00
232_L262_Q1.5271.00
260_A284_E1.5231.00
127_V178_K1.5221.00
154_S280_V1.5211.00
267_C271_A1.5161.00
115_C128_N1.5041.00
263_A281_E1.4901.00
113_W121_V1.4841.00
109_G153_D1.4681.00
281_E284_E1.4671.00
104_H119_R1.4601.00
231_I235_P1.4321.00
252_L289_T1.4111.00
277_D291_R1.4101.00
270_Y290_G1.4101.00
121_V126_A1.4011.00
186_G197_S1.3871.00
174_I206_V1.3821.00
144_T256_S1.3801.00
161_T182_A1.3751.00
162_V228_V1.3741.00
240_A266_V1.3731.00
177_L210_L1.3661.00
242_L245_V1.3351.00
244_S292_K1.3301.00
267_C279_V1.3241.00
110_E153_D1.3211.00
227_V243_I1.3191.00
109_G150_Q1.3121.00
228_V254_G1.3001.00
240_A270_Y1.2921.00
186_G212_L1.2811.00
155_L289_T1.2811.00
67_N71_A1.2801.00
155_L254_G1.2761.00
111_R153_D1.2741.00
185_I213_Y1.2681.00
112_L175_A1.2641.00
129_V175_A1.2521.00
199_D202_E1.2511.00
262_Q265_S1.2241.00
173_A184_A1.2201.00
152_L157_L1.2100.99
155_L252_L1.1800.99
147_L287_R1.1760.99
191_P195_Q1.1720.99
170_G197_S1.1630.99
111_R127_V1.1630.99
195_Q199_D1.1600.99
261_S284_E1.1550.99
97_R101_D1.1530.99
198_R202_E1.1490.99
113_W126_A1.1460.99
177_L206_V1.1320.99
236_L255_L1.1250.99
162_V181_A1.1250.99
191_P214_L1.1200.99
165_F187_I1.1130.99
201_A210_L1.1110.99
260_A286_C1.0970.99
266_V288_I1.0960.99
268_E271_A1.0930.99
267_C276_L1.0890.99
192_Q196_A1.0880.99
167_C173_A1.0880.99
184_A210_L1.0820.99
146_S150_Q1.0780.99
185_I211_E1.0770.99
162_V184_A1.0750.99
201_A206_V1.0710.99
276_L288_I1.0690.99
226_V252_L1.0670.99
147_L232_L1.0530.99
236_L253_L1.0510.99
202_E207_S1.0470.99
100_M118_W1.0390.98
276_L290_G1.0340.98
248_V251_G1.0120.98
114_I149_L1.0090.98
178_K205_G1.0090.98
106_M141_T1.0090.98
52_G55_D1.0070.98
253_L290_G1.0020.98
99_W102_N0.9940.98
227_V246_L0.9750.98
110_E154_S0.9670.97
96_E99_W0.9640.97
173_A186_G0.9460.97
106_M171_I0.9440.97
223_K248_V0.9420.97
116_P133_P0.9420.97
94_D97_R0.9290.97
241_P269_A0.9260.97
241_P272_D0.9220.97
148_C254_G0.9210.97
107_R113_W0.9170.97
236_L270_Y0.9160.97
108_F146_S0.9160.97
50_L53_D0.9140.96
235_P270_Y0.9110.96
169_S233_A0.9050.96
192_Q195_Q0.9020.96
206_V210_L0.9020.96
255_L290_G0.9010.96
152_L179_L0.8980.96
99_W103_F0.8930.96
223_K245_V0.8910.96
162_V226_V0.8900.96
71_A74_E0.8880.96
201_A212_L0.8870.96
202_E205_G0.8760.96
161_T222_M0.8750.95
243_I274_F0.8660.95
77_P80_G0.8580.95
217_D220_E0.8550.95
280_V287_R0.8540.95
163_I227_V0.8520.95
194_I214_L0.8490.95
70_V74_E0.8430.94
135_L196_A0.8420.94
193_A197_S0.8350.94
123_D126_A0.8320.94
65_D69_V0.8270.94
226_V254_G0.8170.93
121_V128_N0.8120.93
267_C290_G0.8040.93
233_A266_V0.8010.93
152_L228_V0.7970.93
147_L280_V0.7920.92
156_D226_V0.7910.92
71_A75_N0.7900.92
194_I212_L0.7870.92
259_L262_Q0.7860.92
96_E100_M0.7840.92
163_I246_L0.7830.92
111_R126_A0.7820.92
129_V178_K0.7760.92
185_I222_M0.7750.92
264_E267_C0.7750.92
177_L201_A0.7700.91
103_F239_L0.7680.91
80_G83_F0.7630.91
187_I215_P0.7630.91
194_I197_S0.7630.91
161_T248_V0.7610.91
254_G289_T0.7590.91
177_L207_S0.7560.91
232_L235_P0.7560.91
73_L76_H0.7520.90
178_K182_A0.7490.90
136_A193_A0.7470.90
244_S247_P0.7460.90
96_E135_L0.7410.90
117_S203_R0.7390.90
255_L288_I0.7380.90
249_S292_K0.7380.90
70_V87_I0.7370.89
161_T224_A0.7340.89
247_P253_L0.7320.89
268_E272_D0.7310.89
240_A269_A0.7310.89
78_L81_A0.7210.88
135_L192_Q0.7210.88
163_I222_M0.7200.88
131_L169_S0.7190.88
258_I286_C0.7160.88
65_D70_V0.7130.88
103_F114_I0.7120.88
72_I75_N0.7110.88
103_F131_L0.7080.87
235_P239_L0.7080.87
229_A236_L0.7070.87
151_W280_V0.7050.87
224_A227_V0.7000.87
161_T223_K0.7000.87
264_E271_A0.6990.87
176_A228_V0.6980.87
116_P132_D0.6970.87
267_C288_I0.6930.86
252_L277_D0.6920.86
118_W133_P0.6860.86
112_L179_L0.6860.86
96_E102_N0.6850.86
103_F235_P0.6850.86
233_A265_S0.6810.85
195_Q198_R0.6740.85
221_E245_V0.6730.85
93_K96_E0.6730.85
117_S130_M0.6720.85
109_G126_A0.6690.84
72_I76_H0.6690.84
96_E139_T0.6690.84
93_K97_R0.6670.84
196_A199_D0.6650.84
114_I129_V0.6620.84
176_A181_A0.6590.83
130_M205_G0.6580.83
107_R110_E0.6570.83
265_S269_A0.6560.83
116_P119_R0.6550.83
66_M69_V0.6510.83
242_L246_L0.6510.83
167_C188_D0.6510.83
223_K292_K0.6490.83
115_C119_R0.6420.82
259_L286_C0.6380.81
103_F117_S0.6370.81
265_S268_E0.6360.81
236_L266_V0.6310.81
147_L151_W0.6280.80
160_K225_D0.6270.80
131_L141_T0.6260.80
243_I255_L0.6250.80
134_G196_A0.6230.80
178_K209_R0.6230.80
258_I262_Q0.6220.80
234_G237_R0.6220.80
133_P147_L0.6200.80
165_F239_L0.6190.80
103_F187_I0.6160.79
70_V85_H0.6150.79
103_F118_W0.6090.78
219_P222_M0.6080.78
147_L196_A0.6060.78
254_G287_R0.6030.78
106_M189_I0.6030.78
108_F149_L0.6030.78
223_K246_L0.6030.78
109_G129_V0.5980.77
131_L134_G0.5970.77
131_L196_A0.5960.77
133_P180_G0.5960.77
130_M203_R0.5940.77
67_N249_S0.5920.76
196_A232_L0.5910.76
198_R201_A0.5900.76
69_V74_E0.5890.76
258_I266_V0.5880.76
109_G113_W0.5860.76
162_V183_K0.5850.76
134_G199_D0.5830.75
215_P218_Q0.5790.75
197_S201_A0.5790.75
56_V59_L0.5790.75
161_T185_I0.5780.75
243_I253_L0.5780.75
113_W122_P0.5750.74
74_E84_A0.5750.74
152_L176_A0.5740.74
121_V129_V0.5730.74
148_C152_L0.5720.74
163_I223_K0.5700.74
234_G265_S0.5660.73
65_D71_A0.5650.73
148_C232_L0.5650.73
178_K206_V0.5640.73
223_K249_S0.5640.73
98_E102_N0.5630.73
237_R240_A0.5610.73
105_P119_R0.5610.73
106_M146_S0.5610.73
62_A89_Q0.5600.72
235_P262_Q0.5590.72
58_G141_T0.5570.72
120_D130_M0.5540.72
99_W133_P0.5530.72
240_A253_L0.5520.71
115_C121_V0.5510.71
189_I235_P0.5510.71
231_I236_L0.5510.71
232_L239_L0.5490.71
122_P125_N0.5430.70
66_M70_V0.5430.70
175_A178_K0.5420.70
129_V174_I0.5410.70
115_C132_D0.5390.70
240_A255_L0.5380.69
147_L152_L0.5370.69
174_I234_G0.5370.69
69_V73_L0.5360.69
49_R53_D0.5360.69
69_V292_K0.5350.69
187_I213_Y0.5350.69
60_F70_V0.5350.69
160_K226_V0.5330.69
194_I198_R0.5320.69
229_A253_L0.5310.68
236_L290_G0.5300.68
197_S229_A0.5300.68
56_V189_I0.5290.68
148_C266_V0.5280.68
75_N202_E0.5280.68
277_D280_V0.5270.68
201_A209_R0.5250.68
152_L155_L0.5240.67
190_D259_L0.5220.67
102_N118_W0.5190.67
134_G262_Q0.5180.67
115_C131_L0.5180.67
50_L54_T0.5160.66
126_A153_D0.5160.66
175_A179_L0.5150.66
150_Q283_E0.5140.66
169_S262_Q0.5130.66
147_L256_S0.5110.66
77_P81_A0.5110.66
75_N91_E0.5090.65
131_L143_P0.5090.65
96_E106_M0.5070.65
111_R179_L0.5060.65
211_E214_L0.5060.65
115_C167_C0.5050.65
108_F141_T0.5030.64
121_V130_M0.5030.64
157_L226_V0.5020.64
199_D203_R0.5010.64
103_F135_L0.5010.64
244_S273_S0.5000.64
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2nxcA 1 0.8396 100 0.419 Contact Map
3grzA 2 0.6519 100 0.659 Contact Map
3gczA 1 0.6485 99.9 0.714 Contact Map
3b3jA 1 0.5256 99.9 0.728 Contact Map
4pwyA 2 0.6519 99.9 0.739 Contact Map
3bzbA 1 0.5495 99.9 0.748 Contact Map
1u2zA 1 0.9352 99.9 0.751 Contact Map
3lcvB 1 0.7474 99.9 0.753 Contact Map
3dmgA 1 0.9283 99.9 0.756 Contact Map
4mtlA 4 0.6724 99.8 0.773 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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