SYN - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SYN - Asparagine--tRNA ligase

UniProt:	P0A8M0	Sequences: MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10094
Length:	466 (421)
Sequences:	9467 (4798)
Seq/√Len:	233.9

ECOLI - SYN SYK1 SYK2 SYD EPMA
BACSU - SYK SYN SYDND
HALSA - SYDND
SULSO - SYK SYDND

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
155_Q	268_A	4.568	1.00
77_T	96_K	3.998	1.00
15_A	18_S	3.845	1.00
52_A	94_A	3.836	1.00
153_N	227_Y	3.676	1.00
19_E	77_T	3.634	1.00
21_T	77_T	3.632	1.00
146_Q	150_R	3.524	1.00
151_F	268_A	3.518	1.00
19_E	95_S	3.305	1.00
150_R	154_E	3.242	1.00
146_Q	153_N	3.227	1.00
75_I	98_E	2.919	1.00
216_G	226_I	2.910	1.00
147_A	276_A	2.895	1.00
147_A	272_Y	2.810	1.00
257_A	261_D	2.755	1.00
395_Q	432_S	2.751	1.00
105_D	425_R	2.454	1.00
140_V	446_T	2.443	1.00
164_L	233_F	2.395	1.00
302_R	312_D	2.390	1.00
318_T	322_N	2.388	1.00
148_L	250_L	2.329	1.00
13_R	89_Q	2.311	1.00
52_A	76_V	2.310	1.00
23_R	75_I	2.276	1.00
144_L	442_I	2.224	1.00
178_R	205_E	2.185	1.00
50_V	92_I	2.149	1.00
145_A	438_F	2.132	1.00
164_L	230_G	2.103	1.00
19_E	79_K	2.087	1.00
295_D	298_S	2.084	1.00
408_L	414_K	2.080	1.00
149_H	159_W	2.064	1.00
404_D	408_L	2.022	1.00
384_A	390_I	2.015	1.00
254_V	257_A	2.007	1.00
79_K	95_S	2.005	1.00
150_R	153_N	1.996	1.00
142_H	153_N	1.980	1.00
318_T	321_E	1.978	1.00
20_V	92_I	1.974	1.00
358_N	370_L	1.973	1.00
271_K	289_A	1.948	1.00
272_Y	276_A	1.947	1.00
137_V	448_V	1.939	1.00
151_F	272_Y	1.935	1.00
259_L	378_A	1.913	1.00
151_F	155_Q	1.909	1.00
17_D	79_K	1.909	1.00
150_R	276_A	1.903	1.00
219_Y	431_H	1.897	1.00
262_I	432_S	1.857	1.00
264_G	268_A	1.845	1.00
151_F	269_M	1.839	1.00
148_L	269_M	1.827	1.00
22_V	50_V	1.812	1.00
355_V	382_V	1.811	1.00
147_A	273_V	1.810	1.00
405_E	409_E	1.807	1.00
81_V	93_Q	1.782	1.00
400_L	404_D	1.774	1.00
252_P	434_F	1.770	1.00
295_D	358_N	1.761	1.00
298_S	302_R	1.756	1.00
154_E	272_Y	1.755	1.00
135_G	139_R	1.749	1.00
12_G	15_A	1.717	1.00
270_L	382_V	1.692	1.00
139_R	158_F	1.662	1.00
404_D	421_R	1.646	1.00
371_N	378_A	1.638	1.00
180_S	203_G	1.631	1.00
21_T	75_I	1.605	1.00
294_K	299_R	1.585	1.00
405_E	408_L	1.568	1.00
136_A	140_V	1.561	1.00
370_L	378_A	1.559	1.00
400_L	425_R	1.556	1.00
157_F	254_V	1.553	1.00
258_N	261_D	1.539	1.00
26_V	74_V	1.532	1.00
404_D	414_K	1.530	1.00
297_V	301_E	1.511	1.00
79_K	93_Q	1.493	1.00
26_V	39_L	1.489	1.00
156_G	225_K	1.485	1.00
121_L	128_R	1.473	1.00
26_V	68_L	1.472	1.00
254_V	265_L	1.463	1.00
292_V	352_A	1.456	1.00
16_V	82_A	1.453	1.00
143_T	146_Q	1.450	1.00
369_R	398_E	1.440	1.00
369_R	399_R	1.429	1.00
274_F	445_V	1.426	1.00
132_N	136_A	1.425	1.00
138_A	223_L	1.409	1.00
239_N	242_R	1.399	1.00
260_N	293_D	1.393	1.00
68_L	74_V	1.391	1.00
347_E	350_F	1.390	1.00
144_L	273_V	1.387	1.00
312_D	315_D	1.387	1.00
395_Q	398_E	1.381	1.00
232_T	249_M	1.375	1.00
313_Y	317_V	1.373	1.00
413_N	416_D	1.370	1.00
133_L	448_V	1.366	1.00
294_K	356_V	1.364	1.00
297_V	376_T	1.358	1.00
180_S	205_E	1.354	1.00
260_N	264_G	1.354	1.00
94_A	97_V	1.348	1.00
147_A	150_R	1.348	1.00
143_T	276_A	1.332	1.00
332_Y	335_V	1.325	1.00
250_L	438_F	1.324	1.00
298_S	301_E	1.322	1.00
404_D	418_W	1.321	1.00
37_S	62_N	1.315	1.00
147_A	277_V	1.309	1.00
45_S	50_V	1.307	1.00
143_T	281_R	1.305	1.00
361_K	406_R	1.305	1.00
152_F	250_L	1.295	1.00
422_D	425_R	1.292	1.00
35_G	56_N	1.292	1.00
225_K	254_V	1.284	1.00
333_W	337_L	1.280	1.00
257_A	432_S	1.280	1.00
334_G	337_L	1.278	1.00
399_R	402_V	1.276	1.00
152_F	252_P	1.273	1.00
409_E	412_L	1.267	1.00
22_V	41_V	1.265	1.00
292_V	302_R	1.261	1.00
373_D	376_T	1.258	1.00
138_A	456_P	1.255	1.00
76_V	94_A	1.254	1.00
139_R	143_T	1.246	1.00
382_V	391_I	1.234	1.00
275_K	279_E	1.233	1.00
140_V	277_V	1.233	1.00
402_V	405_E	1.232	1.00
150_R	272_Y	1.230	1.00
75_I	100_A	1.229	1.00
315_D	318_T	1.228	1.00
13_R	16_V	1.220	1.00
136_A	139_R	1.218	1.00
303_F	349_H	1.210	1.00
264_G	310_Q	1.208	1.00
124_V	422_D	1.207	1.00
59_P	63_E	1.191	1.00
212_G	232_T	1.186	1.00
80_V	90_F	1.179	1.00
36_I	53_V	1.177	1.00
369_R	402_V	1.171	1.00
370_L	376_T	1.168	1.00
28_T	40_A	1.145	1.00
55_N	58_L	1.140	1.00
338_S	342_E	1.140	1.00
144_L	445_V	1.124	1.00
406_R	409_E	1.123	1.00
80_V	92_I	1.120	1.00
40_A	47_F	1.118	1.00
367_Y	394_S	1.115	1.00
214_L	419_W	1.111	1.00
54_I	94_A	1.109	1.00
266_A	436_L	1.109	1.00
42_Y	47_F	1.108	1.00
152_F	269_M	1.101	1.00
148_L	438_F	1.098	1.00
68_L	97_V	1.095	1.00
135_G	223_L	1.081	1.00
160_V	223_L	1.080	1.00
159_W	227_Y	1.079	1.00
13_R	82_A	1.076	1.00
268_A	271_K	1.075	1.00
176_M	200_D	1.075	1.00
263_A	293_D	1.074	1.00
155_Q	265_L	1.071	1.00
143_T	153_N	1.069	1.00
353_P	384_A	1.069	1.00
41_V	74_V	1.069	1.00
22_V	92_I	1.066	1.00
270_L	441_L	1.063	1.00
267_E	271_K	1.060	1.00
212_G	249_M	1.059	1.00
39_L	52_A	1.059	1.00
69_T	72_C	1.058	1.00
176_M	463_N	1.058	1.00
148_L	273_V	1.053	1.00
339_S	343_R	1.049	1.00
43_D	46_C	1.048	1.00
237_N	461_P	1.045	1.00
27_R	42_Y	1.039	1.00
406_R	410_M	1.031	1.00
67_R	102_W	1.031	1.00
338_S	363_I	1.028	1.00
45_S	224_S	1.025	1.00
273_V	277_V	1.025	1.00
140_V	144_L	1.021	1.00
144_L	438_F	1.016	1.00
161_S	231_P	1.013	1.00
63_E	66_L	1.011	1.00
331_V	335_V	1.007	1.00
55_N	93_Q	1.006	1.00
299_R	356_V	0.998	1.00
271_K	288_F	0.996	1.00
448_V	454_V	0.995	1.00
42_Y	71_G	0.992	1.00
320_L	323_C	0.990	1.00
149_H	227_Y	0.989	1.00
311_V	316_A	0.989	1.00
358_N	376_T	0.974	1.00
319_I	323_C	0.971	1.00
448_V	453_D	0.970	1.00
275_K	281_R	0.968	1.00
165_I	206_S	0.963	1.00
261_D	264_G	0.959	1.00
335_V	338_S	0.958	1.00
275_K	286_K	0.957	1.00
129_P	138_A	0.957	1.00
428_T	431_H	0.953	1.00
68_L	99_V	0.952	1.00
269_M	273_V	0.951	1.00
281_R	288_F	0.948	1.00
22_V	76_V	0.942	1.00
266_A	434_F	0.942	1.00
212_G	230_G	0.938	1.00
20_V	80_V	0.932	1.00
73_S	101_G	0.930	1.00
257_A	262_I	0.930	1.00
145_A	159_W	0.929	1.00
220_A	428_T	0.928	1.00
58_L	93_Q	0.927	1.00
166_T	215_N	0.925	1.00
276_A	280_E	0.924	1.00
212_G	215_N	0.923	1.00
54_I	65_V	0.922	1.00
268_A	272_Y	0.921	1.00
140_V	143_T	0.921	1.00
338_S	341_H	0.920	1.00
39_L	74_V	0.914	1.00
319_I	322_N	0.914	1.00
50_V	80_V	0.913	1.00
316_A	320_L	0.910	1.00
259_L	263_A	0.908	1.00
400_L	421_R	0.906	1.00
117_S	120_Y	0.905	1.00
267_E	310_Q	0.904	1.00
361_K	369_R	0.902	1.00
142_H	146_Q	0.900	1.00
151_F	265_L	0.899	0.99
404_D	425_R	0.896	0.99
218_T	457_F	0.894	0.99
101_G	428_T	0.894	0.99
309_A	352_A	0.891	0.99
78_G	92_I	0.888	0.99
314_T	318_T	0.887	0.99
412_L	417_Y	0.875	0.99
109_Y	112_A	0.875	0.99
252_P	266_A	0.875	0.99
418_W	422_D	0.875	0.99
178_R	207_F	0.868	0.99
44_G	139_R	0.868	0.99
321_E	332_Y	0.864	0.99
334_G	338_S	0.864	0.99
266_A	391_I	0.861	0.99
407_M	417_Y	0.857	0.99
262_I	434_F	0.856	0.99
294_K	354_V	0.855	0.99
145_A	250_L	0.853	0.99
332_Y	362_D	0.852	0.99
140_V	278_L	0.852	0.99
343_R	347_E	0.852	0.99
72_C	102_W	0.851	0.99
29_R	37_S	0.849	0.99
126_H	422_D	0.848	0.99
291_R	382_V	0.847	0.99
62_N	66_L	0.847	0.99
267_E	293_D	0.847	0.99
60_N	63_E	0.846	0.99
204_K	462_R	0.843	0.99
334_G	342_E	0.840	0.99
334_G	341_H	0.839	0.99
333_W	336_D	0.838	0.99
321_E	327_F	0.837	0.99
61_Y	65_V	0.835	0.99
39_L	54_I	0.834	0.99
271_K	281_R	0.829	0.99
397_E	402_V	0.827	0.99
155_Q	225_K	0.826	0.99
160_V	219_Y	0.825	0.99
304_I	308_F	0.825	0.99
157_F	225_K	0.824	0.99
133_L	137_V	0.818	0.99
331_V	334_G	0.818	0.99
370_L	402_V	0.813	0.99
58_L	95_S	0.813	0.99
69_T	102_W	0.805	0.99
443_A	451_V	0.805	0.99
390_I	441_L	0.805	0.99
142_H	227_Y	0.804	0.99
328_E	331_V	0.802	0.99
31_D	37_S	0.802	0.99
327_F	331_V	0.801	0.99
290_E	293_D	0.800	0.99
276_A	279_E	0.798	0.99
27_R	47_F	0.797	0.99
331_V	339_S	0.797	0.99
109_Y	116_H	0.797	0.99
22_V	52_A	0.795	0.99
76_V	92_I	0.794	0.99
32_S	36_I	0.792	0.99
273_V	276_A	0.791	0.99
25_W	256_F	0.791	0.99
137_V	446_T	0.789	0.99
168_S	207_F	0.787	0.99
300_L	337_L	0.786	0.99
31_D	35_G	0.785	0.99
267_E	290_E	0.783	0.99
277_V	445_V	0.779	0.99
317_V	321_E	0.776	0.99
312_D	357_K	0.776	0.99
358_N	378_A	0.773	0.98
218_T	423_L	0.773	0.98
257_A	265_L	0.772	0.98
339_S	342_E	0.772	0.98
28_T	70_T	0.771	0.98
325_R	344_Y	0.770	0.98
401_D	404_D	0.770	0.98
220_A	424_R	0.770	0.98
336_D	340_E	0.765	0.98
61_Y	64_D	0.764	0.98
73_S	429_V	0.763	0.98
164_L	212_G	0.763	0.98
147_A	151_F	0.762	0.98
314_T	317_V	0.760	0.98
436_L	441_L	0.757	0.98
64_D	67_R	0.756	0.98
418_W	421_R	0.756	0.98
252_P	262_I	0.755	0.98
259_L	358_N	0.744	0.98
82_A	89_Q	0.743	0.98
364_K	379_A	0.742	0.98
199_K	206_S	0.742	0.98
62_N	65_V	0.741	0.98
164_L	231_P	0.740	0.98
285_M	385_P	0.738	0.98
144_L	277_V	0.736	0.98
33_K	36_I	0.735	0.98
83_S	89_Q	0.734	0.98
39_L	94_A	0.732	0.98
335_V	341_H	0.730	0.98
301_E	315_D	0.729	0.98
42_Y	132_N	0.727	0.98
110_P	113_A	0.727	0.98
368_M	378_A	0.726	0.98
362_D	375_K	0.723	0.98
257_A	395_Q	0.723	0.98
368_M	398_E	0.719	0.98
361_K	377_V	0.717	0.98
37_S	65_V	0.716	0.97
337_L	341_H	0.713	0.97
340_E	344_Y	0.712	0.97
252_P	265_L	0.712	0.97
358_N	371_N	0.711	0.97
379_A	392_G	0.710	0.97
397_E	406_R	0.710	0.97
412_L	416_D	0.707	0.97
272_Y	275_K	0.707	0.97
142_H	158_F	0.705	0.97
167_A	215_N	0.705	0.97
368_M	371_N	0.705	0.97
73_S	256_F	0.702	0.97
263_A	355_V	0.702	0.97
165_I	179_V	0.700	0.97
380_M	393_G	0.700	0.97
131_T	134_I	0.698	0.97
16_V	90_F	0.697	0.97
356_V	383_L	0.697	0.97
83_S	88_Q	0.696	0.97
64_D	97_V	0.695	0.97
258_N	378_A	0.695	0.97
72_C	99_V	0.694	0.97
229_F	438_F	0.694	0.97
143_T	280_E	0.693	0.97
333_W	340_E	0.692	0.97
263_A	357_K	0.689	0.97
442_I	446_T	0.687	0.97
120_Y	124_V	0.686	0.97
274_F	287_F	0.686	0.97
77_T	95_S	0.686	0.97
275_K	278_L	0.685	0.97
150_R	280_E	0.685	0.97
315_D	319_I	0.684	0.97
41_V	52_A	0.683	0.97
63_E	67_R	0.682	0.97
305_E	308_F	0.681	0.97
382_V	436_L	0.679	0.97
26_V	29_R	0.679	0.97
311_V	350_F	0.678	0.97
460_T	463_N	0.677	0.96
319_I	349_H	0.675	0.96
301_E	305_E	0.674	0.96
99_V	102_W	0.674	0.96
291_R	353_P	0.672	0.96
271_K	290_E	0.670	0.96
337_L	340_E	0.669	0.96
140_V	442_I	0.668	0.96
320_L	336_D	0.668	0.96
266_A	380_M	0.667	0.96
274_F	351_K	0.667	0.96
12_G	16_V	0.663	0.96
336_D	339_S	0.661	0.96
52_A	74_V	0.661	0.96
55_N	81_V	0.659	0.96
401_D	405_E	0.659	0.96
82_A	85_G	0.658	0.96
126_H	426_Y	0.656	0.96
378_A	395_Q	0.655	0.96
44_G	224_S	0.653	0.96
446_T	454_V	0.651	0.96
340_E	343_R	0.650	0.96
180_S	200_D	0.649	0.96
162_T	228_T	0.647	0.95
61_Y	97_V	0.646	0.95
402_V	406_R	0.646	0.95
334_G	340_E	0.644	0.95
359_Y	383_L	0.642	0.95
122_R	453_D	0.641	0.95
170_T	211_S	0.641	0.95
134_I	453_D	0.641	0.95
258_N	395_Q	0.637	0.95
54_I	97_V	0.636	0.95
65_V	97_V	0.636	0.95
221_C	429_V	0.635	0.95
312_D	358_N	0.634	0.95
45_S	139_R	0.633	0.95
347_E	352_A	0.633	0.95
299_R	303_F	0.633	0.95
303_F	312_D	0.631	0.95
18_S	80_V	0.629	0.95
270_L	436_L	0.629	0.95
271_K	275_K	0.627	0.95
327_F	336_D	0.627	0.95
260_N	263_A	0.627	0.95
314_T	333_W	0.626	0.95
412_L	415_E	0.625	0.95
330_P	335_V	0.624	0.95
335_V	340_E	0.623	0.94
299_R	345_L	0.621	0.94
336_D	341_H	0.620	0.94
12_G	50_V	0.619	0.94
152_F	265_L	0.618	0.94
346_A	350_F	0.618	0.94
331_V	336_D	0.617	0.94
299_R	302_R	0.616	0.94
134_I	137_V	0.616	0.94
294_K	303_F	0.615	0.94
109_Y	120_Y	0.615	0.94
398_E	428_T	0.614	0.94
330_P	334_G	0.614	0.94
102_W	399_R	0.614	0.94
254_V	261_D	0.614	0.94
220_A	420_Y	0.613	0.94
141_R	161_S	0.613	0.94
294_K	302_R	0.613	0.94
278_L	445_V	0.611	0.94
145_A	161_S	0.611	0.94
240_T	450_N	0.611	0.94
364_K	394_S	0.611	0.94
57_S	93_Q	0.609	0.94
271_K	291_R	0.608	0.94
128_R	131_T	0.607	0.94
17_D	82_A	0.607	0.94
200_D	463_N	0.607	0.94
332_Y	342_E	0.606	0.94
259_L	357_K	0.606	0.94
145_A	229_F	0.606	0.94
58_L	79_K	0.605	0.94
238_S	460_T	0.605	0.94
332_Y	336_D	0.602	0.93
132_N	135_G	0.600	0.93
36_I	81_V	0.598	0.93
152_F	434_F	0.598	0.93
381_D	392_G	0.597	0.93
259_L	370_L	0.596	0.93
111_M	116_H	0.595	0.93
262_I	266_A	0.593	0.93
391_I	436_L	0.592	0.93
109_Y	113_A	0.590	0.93
368_M	402_V	0.589	0.93
270_L	291_R	0.589	0.93
265_L	268_A	0.589	0.93
125_A	129_P	0.589	0.93
289_A	293_D	0.586	0.92
56_N	62_N	0.585	0.92
286_K	289_A	0.585	0.92
316_A	319_I	0.585	0.92
167_A	204_K	0.585	0.92
161_S	248_W	0.584	0.92
304_I	307_D	0.577	0.92
262_I	265_L	0.575	0.92
162_T	212_G	0.575	0.92
158_F	223_L	0.575	0.92
113_A	116_H	0.573	0.92
133_L	453_D	0.573	0.92
127_L	422_D	0.573	0.92
293_D	299_R	0.572	0.92
152_F	227_Y	0.571	0.91
371_N	376_T	0.570	0.91
155_Q	272_Y	0.567	0.91
326_K	329_N	0.566	0.91
285_M	351_K	0.566	0.91
133_L	136_A	0.566	0.91
355_V	380_M	0.565	0.91
30_R	40_A	0.563	0.91
167_A	459_R	0.563	0.91
422_D	463_N	0.563	0.91
80_V	91_E	0.563	0.91
112_A	117_S	0.563	0.91
129_P	221_C	0.563	0.91
72_C	103_V	0.563	0.91
37_S	61_Y	0.563	0.91
143_T	147_A	0.562	0.91
162_T	216_G	0.560	0.91
278_L	285_M	0.559	0.91
151_F	273_V	0.558	0.91
118_I	122_R	0.557	0.90
323_C	340_E	0.557	0.90
29_R	70_T	0.555	0.90
341_H	356_V	0.555	0.90
31_D	66_L	0.555	0.90
303_F	308_F	0.554	0.90
420_Y	424_R	0.553	0.90
219_Y	428_T	0.553	0.90
29_R	39_L	0.552	0.90
311_V	315_D	0.552	0.90
137_V	453_D	0.551	0.90
361_K	375_K	0.550	0.90
141_R	439_E	0.549	0.90
263_A	392_G	0.548	0.90
50_V	90_F	0.547	0.90
448_V	451_V	0.547	0.90
32_S	37_S	0.547	0.90
18_S	79_K	0.547	0.90
138_A	219_Y	0.547	0.90
391_I	434_F	0.545	0.90
263_A	266_A	0.545	0.90
254_V	262_I	0.545	0.90
325_R	328_E	0.544	0.89
301_E	307_D	0.544	0.89
24_G	52_A	0.544	0.89
332_Y	341_H	0.543	0.89
68_L	72_C	0.543	0.89
102_W	401_D	0.542	0.89
27_R	112_A	0.542	0.89
232_T	250_L	0.542	0.89
103_V	426_Y	0.542	0.89
424_R	428_T	0.541	0.89
264_G	293_D	0.540	0.89
262_I	380_M	0.540	0.89
263_A	267_E	0.538	0.89
364_K	367_Y	0.536	0.89
23_R	100_A	0.536	0.89
58_L	61_Y	0.535	0.89
214_L	420_Y	0.535	0.89
12_G	89_Q	0.535	0.89
127_L	130_R	0.535	0.89
259_L	395_Q	0.535	0.89
372_E	375_K	0.535	0.89
267_E	291_R	0.535	0.89
212_G	229_F	0.535	0.89
266_A	382_V	0.533	0.88
175_E	209_T	0.533	0.88
415_E	418_W	0.532	0.88
341_H	344_Y	0.532	0.88
218_T	419_W	0.531	0.88
422_D	426_Y	0.530	0.88
110_P	117_S	0.529	0.88
108_T	426_Y	0.529	0.88
310_Q	313_Y	0.529	0.88
349_H	447_G	0.528	0.88
329_N	338_S	0.528	0.88
313_Y	333_W	0.527	0.88
403_L	424_R	0.527	0.88
169_D	207_F	0.527	0.88
270_L	287_F	0.527	0.88
362_D	365_A	0.527	0.88
215_N	232_T	0.526	0.88
332_Y	338_S	0.525	0.88
53_V	91_E	0.525	0.88
206_S	459_R	0.524	0.88
323_C	344_Y	0.523	0.88
54_I	58_L	0.522	0.87
152_F	155_Q	0.522	0.87
107_D	110_P	0.522	0.87
335_V	339_S	0.521	0.87
45_S	156_G	0.521	0.87
291_R	354_V	0.521	0.87
144_L	441_L	0.519	0.87
271_K	286_K	0.518	0.87
216_G	220_A	0.517	0.87
333_W	338_S	0.516	0.87
111_M	124_V	0.516	0.87
327_F	330_P	0.516	0.87
59_P	62_N	0.514	0.87
166_T	214_L	0.514	0.87
331_V	342_E	0.513	0.87
263_A	310_Q	0.510	0.86
331_V	337_L	0.508	0.86
157_F	212_G	0.508	0.86
273_V	441_L	0.507	0.86
335_V	343_R	0.507	0.86
279_E	284_D	0.507	0.86
201_F	204_K	0.507	0.86
216_G	228_T	0.507	0.86
129_P	223_L	0.505	0.86
309_A	315_D	0.504	0.86
316_A	356_V	0.504	0.86
29_R	69_T	0.502	0.85
73_S	100_A	0.502	0.85
335_V	342_E	0.501	0.85
331_V	340_E	0.501	0.85
294_K	298_S	0.501	0.85
39_L	65_V	0.500	0.85
146_Q	154_E	0.500	0.85

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3i7fA	2	0.8948	100	0.197	Contact Map
1eovA	2	0.9442	100	0.202	Contact Map
4pg3A	2	0.9163	100	0.208	Contact Map
4up7A	2	0.9056	100	0.215	Contact Map
4j15A	2	0.8519	100	0.216	Contact Map
4ycuA	3	0.9378	100	0.216	Contact Map
4ex5A	2	0.9206	100	0.217	Contact Map
4wj4A	2	0.9249	100	0.221	Contact Map
1c0aA	1	0.927	100	0.221	Contact Map
3a74A	4	0.9227	100	0.222	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0119 seconds.