SYS - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SYS - Serine--tRNA ligase

UniProt:	P0A8L1	Sequences: MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10947
Length:	430 (417)
Sequences:	4331 (2319)
Seq/√Len:	113.6

ECOLI - SYS
BACSU - SYS
HALSA - SYS
SULSO - SYS

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
408_Q	414_E	4.456	1.00
246_V	260_M	3.984	1.00
183_L	315_V	3.778	1.00
122_E	125_R	3.740	1.00
320_G	417_E	3.306	1.00
297_R	300_D	3.246	1.00
36_R	88_E	3.172	1.00
50_E	74_E	3.140	1.00
302_M	363_W	3.078	1.00
414_E	420_R	2.947	1.00
43_K	81_E	2.937	1.00
300_D	303_A	2.768	1.00
137_R	145_M	2.761	1.00
179_F	318_L	2.719	1.00
164_V	245_L	2.684	1.00
338_C	363_W	2.586	1.00
142_L	413_I	2.569	1.00
147_S	166_K	2.550	1.00
376_S	383_R	2.528	1.00
101_L	205_Y	2.516	1.00
314_K	318_L	2.423	1.00
133_D	409_A	2.422	1.00
113_V	330_T	2.421	1.00
124_S	313_E	2.380	1.00
183_L	318_L	2.377	1.00
20_R	113_V	2.362	1.00
15_A	28_D	2.348	1.00
29_K	95_E	2.346	1.00
259_K	307_E	2.332	1.00
124_S	325_K	2.280	1.00
62_K	72_R	2.259	1.00
417_E	420_R	2.187	1.00
403_M	413_I	2.181	1.00
182_D	422_Y	2.110	1.00
313_E	317_Q	2.060	1.00
304_A	307_E	2.054	1.00
408_Q	412_R	2.052	1.00
153_A	249_E	2.044	1.00
108_A	302_M	2.016	1.00
91_A	95_E	2.015	1.00
10_E	13_A	2.011	1.00
188_H	314_K	1.973	1.00
375_R	382_T	1.944	1.00
157_L	164_V	1.931	1.00
16_E	20_R	1.896	1.00
294_Q	304_A	1.886	1.00
321_L	345_V	1.881	1.00
61_A	66_E	1.877	1.00
187_Q	318_L	1.859	1.00
201_Q	233_A	1.855	1.00
198_L	220_T	1.849	1.00
126_W	317_Q	1.842	1.00
203_T	247_R	1.842	1.00
236_P	240_V	1.828	1.00
322_P	405_N	1.812	1.00
193_N	245_L	1.792	1.00
110_E	339_K	1.792	1.00
148_G	169_I	1.791	1.00
328_L	340_T	1.785	1.00
57_S	60_Q	1.753	1.00
108_A	363_W	1.718	1.00
327_I	339_K	1.706	1.00
32_A	36_R	1.705	1.00
16_E	19_A	1.700	1.00
128_T	131_E	1.697	1.00
197_Y	267_F	1.693	1.00
49_A	53_S	1.689	1.00
8_R	34_E	1.685	1.00
94_A	98_D	1.670	1.00
69_E	73_L	1.650	1.00
143_G	149_L	1.650	1.00
107_P	333_M	1.649	1.00
17_K	109_D	1.645	1.00
376_S	379_D	1.636	1.00
195_V	241_P	1.626	1.00
252_D	255_D	1.621	1.00
337_A	340_T	1.619	1.00
29_K	32_A	1.616	1.00
221_R	229_T	1.603	1.00
77_K	81_E	1.589	1.00
93_Q	97_R	1.582	1.00
314_K	317_Q	1.575	1.00
6_L	10_E	1.572	1.00
156_K	249_E	1.571	1.00
301_S	386_H	1.568	1.00
253_E	297_R	1.557	1.00
335_F	365_F	1.548	1.00
47_L	78_L	1.546	1.00
107_P	330_T	1.536	1.00
53_S	57_S	1.526	1.00
259_K	294_Q	1.515	1.00
41_Q	45_E	1.513	1.00
202_D	247_R	1.497	1.00
198_L	232_Y	1.481	1.00
17_K	20_R	1.477	1.00
39_V	43_K	1.477	1.00
81_E	84_A	1.473	1.00
393_L	398_T	1.469	1.00
115_K	119_D	1.463	1.00
173_H	288_D	1.455	1.00
163_V	284_M	1.450	1.00
35_E	39_V	1.444	1.00
138_D	141_T	1.432	1.00
48_Q	86_K	1.431	1.00
230_S	269_S	1.429	1.00
69_E	72_R	1.426	1.00
40_L	89_L	1.423	1.00
297_R	374_C	1.416	1.00
201_Q	231_N	1.414	1.00
43_K	46_N	1.409	1.00
144_E	152_A	1.406	1.00
153_A	245_L	1.401	1.00
154_A	163_V	1.398	1.00
50_E	53_S	1.391	1.00
259_K	304_A	1.383	1.00
201_Q	214_A	1.377	1.00
242_L	262_A	1.369	1.00
87_A	91_A	1.363	1.00
11_P	31_G	1.353	1.00
119_D	329_C	1.340	1.00
54_R	75_V	1.335	1.00
295_I	385_V	1.327	1.00
20_R	330_T	1.325	1.00
166_K	191_S	1.323	1.00
6_L	13_A	1.323	1.00
253_E	377_K	1.320	1.00
214_A	233_A	1.320	1.00
40_L	92_L	1.318	1.00
158_T	232_Y	1.313	1.00
73_L	77_K	1.311	1.00
68_I	72_R	1.300	0.99
36_R	39_V	1.296	0.99
296_V	304_A	1.281	0.99
306_E	341_Y	1.278	0.99
246_V	295_I	1.278	0.99
60_Q	64_R	1.277	0.99
34_E	38_K	1.268	0.99
124_S	309_T	1.259	0.99
301_S	361_N	1.259	0.99
37_R	41_Q	1.258	0.99
84_A	88_E	1.242	0.99
183_L	187_Q	1.240	0.99
80_E	84_A	1.235	0.99
116_D	119_D	1.234	0.99
12_D	16_E	1.228	0.99
320_G	406_Y	1.219	0.99
350_Q	354_R	1.219	0.99
406_Y	415_V	1.217	0.99
302_M	338_C	1.214	0.99
183_L	314_K	1.204	0.99
129_P	322_P	1.202	0.99
310_G	317_Q	1.196	0.99
79_G	83_D	1.194	0.99
17_K	107_P	1.191	0.99
168_Q	426_L	1.191	0.99
74_E	77_K	1.184	0.99
46_N	50_E	1.178	0.99
125_R	129_P	1.177	0.99
57_S	61_A	1.177	0.99
282_I	400_V	1.174	0.99
87_A	90_D	1.171	0.99
200_N	203_T	1.164	0.99
298_P	374_C	1.163	0.99
325_K	343_L	1.162	0.99
6_L	14_V	1.159	0.99
177_S	263_H	1.154	0.99
242_L	362_V	1.151	0.99
76_N	79_G	1.144	0.99
88_E	91_A	1.144	0.99
308_M	359_C	1.138	0.99
317_Q	323_Y	1.138	0.99
359_C	390_G	1.135	0.99
138_D	349_A	1.134	0.99
110_E	302_M	1.134	0.99
317_Q	325_K	1.132	0.99
124_S	317_Q	1.132	0.99
372_A	385_V	1.129	0.99
40_L	85_A	1.122	0.99
415_V	420_R	1.119	0.98
308_M	362_V	1.119	0.98
15_A	27_V	1.111	0.98
294_Q	307_E	1.109	0.98
183_L	188_H	1.105	0.98
98_D	102_T	1.099	0.98
70_P	74_E	1.090	0.98
337_A	362_V	1.080	0.98
7_L	10_E	1.073	0.98
61_A	71_L	1.073	0.98
206_G	370_M	1.063	0.98
141_T	144_E	1.061	0.98
83_D	86_K	1.056	0.98
180_M	315_V	1.054	0.98
8_R	38_K	1.054	0.98
250_I	373_R	1.053	0.98
60_Q	63_A	1.052	0.98
219_H	233_A	1.051	0.98
193_N	242_L	1.048	0.98
67_D	70_P	1.048	0.98
90_D	94_A	1.045	0.98
33_L	92_L	1.041	0.98
302_M	306_E	1.040	0.98
309_T	325_K	1.040	0.98
327_I	333_M	1.035	0.97
367_A	387_T	1.031	0.97
255_D	258_I	1.026	0.97
402_V	406_Y	1.025	0.97
29_K	99_I	1.023	0.97
371_Q	384_L	1.016	0.97
132_F	136_V	1.016	0.97
347_I	354_R	1.009	0.97
347_I	400_V	1.008	0.97
108_A	111_V	1.008	0.97
171_R	182_D	1.006	0.97
5_N	9_N	1.003	0.97
294_Q	311_H	1.002	0.97
2_L	7_L	1.001	0.97
179_F	418_V	1.000	0.97
83_D	87_A	0.999	0.97
30_L	99_I	0.995	0.97
306_E	309_T	0.988	0.97
42_V	46_N	0.986	0.97
376_S	380_K	0.984	0.97
204_L	217_L	0.984	0.97
134_F	409_A	0.982	0.97
44_T	82_L	0.981	0.96
32_A	35_E	0.979	0.96
309_T	343_L	0.978	0.96
70_P	73_L	0.977	0.96
55_S	75_V	0.975	0.96
374_C	383_R	0.974	0.96
77_K	80_E	0.972	0.96
194_Y	288_D	0.971	0.96
137_R	141_T	0.971	0.96
318_L	418_V	0.970	0.96
210_L	217_L	0.969	0.96
56_K	59_G	0.968	0.96
13_A	17_K	0.968	0.96
243_T	293_V	0.965	0.96
92_L	96_I	0.965	0.96
13_A	16_E	0.959	0.96
17_K	106_L	0.954	0.96
36_R	95_E	0.954	0.96
248_G	371_Q	0.949	0.96
116_D	331_G	0.948	0.96
7_L	30_L	0.942	0.96
47_L	81_E	0.941	0.96
181_L	185_T	0.938	0.95
154_A	158_T	0.936	0.95
253_E	376_S	0.929	0.95
30_L	103_I	0.927	0.95
219_H	231_N	0.926	0.95
320_G	414_E	0.926	0.95
303_A	307_E	0.925	0.95
51_R	79_G	0.925	0.95
250_I	382_T	0.924	0.95
197_Y	265_P	0.922	0.95
259_K	311_H	0.918	0.95
188_H	311_H	0.916	0.95
36_R	92_L	0.916	0.95
54_R	57_S	0.916	0.95
212_K	216_D	0.907	0.95
423_M	426_L	0.903	0.94
95_E	98_D	0.903	0.94
2_L	14_V	0.896	0.94
310_G	313_E	0.892	0.94
415_V	423_M	0.890	0.94
184_H	392_G	0.890	0.94
158_T	200_N	0.887	0.94
130_R	414_E	0.883	0.94
45_E	48_Q	0.879	0.94
246_V	258_I	0.873	0.93
2_L	6_L	0.864	0.93
201_Q	205_Y	0.862	0.93
313_E	323_Y	0.861	0.93
111_V	327_I	0.854	0.93
253_E	256_L	0.853	0.93
11_P	27_V	0.852	0.93
40_L	88_E	0.850	0.92
182_D	421_P	0.847	0.92
220_T	232_Y	0.847	0.92
44_T	86_K	0.841	0.92
168_Q	423_M	0.838	0.92
310_G	314_K	0.836	0.92
168_Q	425_G	0.829	0.92
190_Y	294_Q	0.828	0.91
99_I	102_T	0.828	0.91
86_K	90_D	0.826	0.91
122_E	324_R	0.825	0.91
75_V	78_L	0.824	0.91
320_G	418_V	0.824	0.91
197_Y	288_D	0.820	0.91
305_L	341_Y	0.818	0.91
61_A	64_R	0.818	0.91
361_N	386_H	0.817	0.91
297_R	376_S	0.815	0.91
242_L	260_M	0.813	0.91
187_Q	314_K	0.812	0.91
377_K	380_K	0.811	0.91
349_A	400_V	0.810	0.91
22_G	115_K	0.810	0.91
21_R	334_G	0.810	0.91
420_R	426_L	0.803	0.90
173_H	194_Y	0.801	0.90
250_I	375_R	0.795	0.90
218_F	269_S	0.793	0.90
130_R	322_P	0.793	0.90
158_T	203_T	0.793	0.90
246_V	251_I	0.792	0.90
208_G	336_G	0.791	0.89
197_Y	286_Q	0.788	0.89
45_E	89_L	0.787	0.89
406_Y	418_V	0.785	0.89
44_T	48_Q	0.785	0.89
33_L	95_E	0.784	0.89
315_V	393_L	0.782	0.89
177_S	395_V	0.781	0.89
265_P	288_D	0.779	0.89
123_V	327_I	0.778	0.89
97_R	101_L	0.768	0.88
62_K	68_I	0.767	0.88
56_K	60_Q	0.766	0.88
153_A	164_V	0.764	0.88
203_T	244_N	0.762	0.88
75_V	79_G	0.762	0.88
55_S	59_G	0.761	0.88
349_A	352_T	0.758	0.87
252_D	375_R	0.757	0.87
123_V	341_Y	0.757	0.87
115_K	329_C	0.756	0.87
221_R	230_S	0.755	0.87
35_E	38_K	0.754	0.87
127_G	130_R	0.752	0.87
282_I	354_R	0.752	0.87
44_T	89_L	0.748	0.87
245_L	260_M	0.747	0.87
121_V	327_I	0.746	0.87
190_Y	311_H	0.742	0.86
120_N	329_C	0.742	0.86
59_G	72_R	0.738	0.86
40_L	43_K	0.738	0.86
165_M	399_L	0.735	0.86
4_P	100_A	0.734	0.86
175_A	423_M	0.734	0.86
30_L	96_I	0.733	0.86
43_K	85_A	0.733	0.86
45_E	49_A	0.732	0.86
138_D	400_V	0.731	0.85
159_G	232_Y	0.728	0.85
149_L	163_V	0.728	0.85
166_K	193_N	0.728	0.85
54_R	71_L	0.727	0.85
92_L	95_E	0.727	0.85
161_R	356_I	0.724	0.85
171_R	424_N	0.723	0.85
148_G	166_K	0.721	0.85
48_Q	82_L	0.717	0.84
197_Y	235_I	0.716	0.84
148_G	403_M	0.716	0.84
147_S	167_G	0.715	0.84
214_A	219_H	0.715	0.84
94_A	97_R	0.714	0.84
28_D	32_A	0.712	0.84
302_M	361_N	0.711	0.84
72_R	76_N	0.711	0.84
29_K	33_L	0.711	0.84
292_M	308_M	0.709	0.84
298_P	383_R	0.709	0.84
184_H	261_T	0.709	0.84
59_G	76_N	0.708	0.84
117_E	326_I	0.708	0.84
54_R	74_E	0.707	0.84
143_G	403_M	0.706	0.83
65_G	68_I	0.706	0.83
154_A	164_V	0.704	0.83
148_G	168_Q	0.703	0.83
328_L	337_A	0.701	0.83
41_Q	93_Q	0.700	0.83
210_L	214_A	0.698	0.83
7_L	14_V	0.694	0.82
158_T	220_T	0.692	0.82
379_D	383_R	0.692	0.82
146_H	413_I	0.692	0.82
143_G	146_H	0.692	0.82
309_T	359_C	0.691	0.82
111_V	333_M	0.689	0.82
209_Q	244_N	0.687	0.82
76_N	80_E	0.684	0.81
330_T	333_M	0.682	0.81
13_A	109_D	0.682	0.81
142_L	407_Q	0.681	0.81
33_L	96_I	0.678	0.81
165_M	288_D	0.675	0.81
50_E	54_R	0.675	0.81
243_T	362_V	0.674	0.81
19_A	24_K	0.674	0.81
250_I	371_Q	0.673	0.80
251_I	255_D	0.673	0.80
184_H	292_M	0.672	0.80
161_R	277_D	0.672	0.80
158_T	199_V	0.670	0.80
36_R	40_L	0.669	0.80
12_D	15_A	0.669	0.80
89_L	92_L	0.667	0.80
246_V	372_A	0.666	0.80
406_Y	417_E	0.665	0.80
133_D	136_V	0.665	0.80
136_V	349_A	0.665	0.80
44_T	85_A	0.664	0.80
414_E	417_E	0.663	0.79
61_A	67_D	0.663	0.79
26_D	29_K	0.663	0.79
333_M	340_T	0.662	0.79
85_A	88_E	0.661	0.79
59_G	68_I	0.659	0.79
217_L	236_P	0.657	0.79
51_R	82_L	0.657	0.79
258_I	261_T	0.657	0.79
146_H	169_I	0.655	0.79
167_G	191_S	0.654	0.78
51_R	78_L	0.653	0.78
95_E	99_I	0.653	0.78
73_L	76_N	0.651	0.78
57_S	71_L	0.649	0.78
238_A	261_T	0.647	0.78
37_R	96_I	0.646	0.78
199_V	241_P	0.646	0.78
88_E	92_L	0.645	0.78
263_H	288_D	0.645	0.78
149_L	165_M	0.640	0.77
193_N	260_M	0.640	0.77
220_T	230_S	0.639	0.77
376_S	381_K	0.638	0.77
251_I	385_V	0.637	0.77
345_V	401_A	0.636	0.77
299_E	376_S	0.635	0.76
174_R	192_E	0.634	0.76
57_S	67_D	0.634	0.76
190_Y	292_M	0.633	0.76
217_L	240_V	0.633	0.76
7_L	31_G	0.632	0.76
249_E	255_D	0.631	0.76
207_T	293_V	0.631	0.76
179_F	183_L	0.630	0.76
238_A	241_P	0.630	0.76
157_L	203_T	0.630	0.76
238_A	262_A	0.630	0.76
27_V	30_L	0.628	0.76
214_A	221_R	0.626	0.75
207_T	243_T	0.626	0.75
181_L	261_T	0.626	0.75
80_E	83_D	0.625	0.75
295_I	372_A	0.623	0.75
37_R	92_L	0.623	0.75
178_Q	263_H	0.623	0.75
74_E	81_E	0.623	0.75
123_V	309_T	0.622	0.75
81_E	85_A	0.622	0.75
254_D	377_K	0.621	0.75
415_V	425_G	0.619	0.75
47_L	82_L	0.619	0.75
37_R	93_Q	0.618	0.75
415_V	426_L	0.617	0.74
198_L	234_L	0.617	0.74
168_Q	171_R	0.616	0.74
293_V	362_V	0.615	0.74
15_A	19_A	0.615	0.74
305_L	309_T	0.615	0.74
151_F	281_L	0.614	0.74
308_M	388_L	0.614	0.74
302_M	305_L	0.613	0.74
114_G	331_G	0.612	0.74
53_S	56_K	0.612	0.74
269_S	273_S	0.611	0.74
306_E	339_K	0.609	0.73
305_L	359_C	0.609	0.73
281_L	400_V	0.608	0.73
115_K	118_N	0.608	0.73
90_D	93_Q	0.606	0.73
194_Y	197_Y	0.606	0.73
140_V	279_R	0.605	0.73
194_Y	265_P	0.605	0.73
219_H	229_T	0.605	0.73
82_L	86_K	0.604	0.73
284_M	399_L	0.603	0.73
71_L	74_E	0.603	0.73
41_Q	44_T	0.602	0.73
356_I	398_T	0.599	0.72
163_V	281_L	0.598	0.72
126_W	323_Y	0.597	0.72
199_V	235_I	0.596	0.72
132_F	135_E	0.595	0.72
135_E	141_T	0.594	0.72
97_R	205_Y	0.593	0.71
6_L	11_P	0.593	0.71
137_R	142_L	0.593	0.71
402_V	415_V	0.593	0.71
364_D	386_H	0.593	0.71
277_D	354_R	0.591	0.71
339_K	361_N	0.590	0.71
68_I	71_L	0.590	0.71
130_R	320_G	0.590	0.71
158_T	198_L	0.588	0.71
62_K	67_D	0.588	0.71
374_C	385_V	0.586	0.71
244_N	247_R	0.586	0.71
34_E	100_A	0.586	0.71
157_L	245_L	0.586	0.71
130_R	408_Q	0.585	0.70
200_N	232_Y	0.585	0.70
14_V	106_L	0.584	0.70
315_V	318_L	0.583	0.70
214_A	217_L	0.583	0.70
220_T	269_S	0.582	0.70
218_F	232_Y	0.580	0.70
173_H	395_V	0.579	0.70
20_R	107_P	0.578	0.70
143_G	148_G	0.578	0.70
294_Q	308_M	0.577	0.69
84_A	87_A	0.577	0.69
43_K	47_L	0.576	0.69
315_V	392_G	0.576	0.69
336_G	340_T	0.575	0.69
64_R	68_I	0.575	0.69
353_Y	398_T	0.574	0.69
312_A	357_S	0.572	0.69
91_A	94_A	0.571	0.69
312_A	343_L	0.571	0.69
58_I	75_V	0.570	0.68
161_R	354_R	0.569	0.68
136_V	407_Q	0.568	0.68
6_L	9_N	0.567	0.68
307_E	311_H	0.565	0.68
273_S	276_R	0.565	0.68
407_Q	411_G	0.565	0.68
402_V	418_V	0.564	0.68
51_R	55_S	0.563	0.68
217_L	233_A	0.562	0.67
150_D	153_A	0.562	0.67
108_A	338_C	0.561	0.67
21_R	107_P	0.561	0.67
39_V	42_V	0.560	0.67
357_S	390_G	0.560	0.67
246_V	249_E	0.559	0.67
349_A	354_R	0.558	0.67
142_L	145_M	0.557	0.67
111_V	330_T	0.557	0.67
61_A	70_P	0.557	0.67
156_K	248_G	0.556	0.67
347_I	352_T	0.556	0.67
134_F	407_Q	0.556	0.67
37_R	89_L	0.556	0.67
253_E	380_K	0.555	0.66
246_V	385_V	0.554	0.66
3_D	368_R	0.553	0.66
251_I	258_I	0.552	0.66
242_L	261_T	0.552	0.66
140_V	151_F	0.552	0.66
220_T	231_N	0.550	0.66
173_H	396_G	0.548	0.65
421_P	424_N	0.547	0.65
354_R	396_G	0.546	0.65
42_V	45_E	0.546	0.65
336_G	362_V	0.546	0.65
184_H	188_H	0.544	0.65
89_L	93_Q	0.544	0.65
395_V	398_T	0.542	0.65
43_K	88_E	0.540	0.64
7_L	11_P	0.540	0.64
379_D	382_T	0.540	0.64
276_R	326_I	0.538	0.64
327_I	343_L	0.537	0.64
229_T	269_S	0.536	0.64
164_V	195_V	0.535	0.64
258_I	295_I	0.535	0.64
178_Q	182_D	0.534	0.63
165_M	194_Y	0.534	0.63
243_T	387_T	0.534	0.63
110_E	306_E	0.534	0.63
184_H	315_V	0.533	0.63
21_R	330_T	0.533	0.63
199_V	204_L	0.533	0.63
46_N	49_A	0.531	0.63
154_A	162_F	0.531	0.63
398_T	402_V	0.531	0.63
376_S	382_T	0.530	0.63
15_A	25_L	0.530	0.63
40_L	44_T	0.529	0.63
28_D	31_G	0.529	0.63
235_I	241_P	0.529	0.63
274_Y	278_T	0.528	0.63
322_P	353_Y	0.526	0.62
64_R	67_D	0.524	0.62
181_L	192_E	0.524	0.62
309_T	341_Y	0.524	0.62
284_M	400_V	0.522	0.62
297_R	303_A	0.521	0.62
175_A	425_G	0.520	0.61
207_T	240_V	0.519	0.61
155_V	159_G	0.518	0.61
217_L	264_T	0.518	0.61
364_D	368_R	0.517	0.61
116_D	329_C	0.517	0.61
59_G	63_A	0.517	0.61
292_M	311_H	0.516	0.61
364_D	384_L	0.515	0.61
180_M	391_S	0.515	0.61
67_D	72_R	0.514	0.61
215_G	269_S	0.514	0.61
19_A	25_L	0.514	0.61
108_A	361_N	0.512	0.60
11_P	15_A	0.512	0.60
110_E	327_I	0.511	0.60
237_T	389_N	0.511	0.60
305_L	361_N	0.511	0.60
420_R	423_M	0.510	0.60
236_P	391_S	0.510	0.60
173_H	263_H	0.509	0.60
130_R	133_D	0.508	0.60
347_I	356_I	0.507	0.60
161_R	276_R	0.505	0.59
125_R	353_Y	0.505	0.59
97_R	371_Q	0.504	0.59
177_S	288_D	0.503	0.59
120_N	331_G	0.502	0.59
206_G	247_R	0.502	0.59
374_C	377_K	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2dq0A	2	0.9814	100	0.239	Contact Map
1sesA	2	0.9674	100	0.241	Contact Map
2dq3A	2	0.9791	100	0.25	Contact Map
1wleA	2	0.9791	100	0.253	Contact Map
3lssA	2	0.9791	100	0.257	Contact Map
3vbbA	2	0.9791	100	0.272	Contact Map
3qneA	2	0.9628	100	0.279	Contact Map
3errA	2	0.9674	100	0.37	Contact Map
2cjaA	2	0.9302	100	0.537	Contact Map
3w3sA	2	0.9047	100	0.601	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0125 seconds.