GREMLIN Database
YAJQ - UPF0234 protein YajQ
UniProt: P0A8E7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13613
Length: 163 (158)
Sequences: 1297 (631)
Seq/√Len: 50.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
14_E72_R3.5931.00
82_P97_K3.4681.00
37_A52_S3.3951.00
147_V156_F3.2341.00
114_I143_V2.9311.00
111_V123_A2.7051.00
103_E106_T2.5451.00
117_S146_M2.4811.00
69_L79_L2.4411.00
54_S57_Q2.3901.00
80_D99_K2.3751.00
111_V130_I2.3711.00
6_I147_V2.3611.00
10_V98_L2.2681.00
21_N68_K2.2091.00
113_M150_G2.1081.00
16_R20_D2.0871.00
47_T95_E2.0321.00
113_M152_L1.9220.99
114_I132_V1.8490.99
112_K116_D1.7500.99
39_F61_L1.7390.99
58_V94_V1.7390.99
13_Q16_R1.7230.99
106_T109_K1.7220.99
69_L74_I1.7020.98
129_E159_K1.6840.98
19_V65_L1.6300.98
111_V115_K1.6020.98
2_P122_Q1.6020.98
87_H93_F1.5790.98
20_D24_R1.5550.97
123_A130_I1.5350.97
50_V61_L1.5320.97
84_N92_W1.5110.97
73_G148_R1.4990.97
9_E128_D1.4980.97
51_L91_T1.4950.97
15_A69_L1.4910.96
26_V61_L1.4910.96
46_K100_Q1.4880.96
137_R161_F1.4590.96
110_I130_I1.4570.96
102_I107_Q1.4400.96
126_Q129_E1.4370.96
63_D67_A1.4240.95
79_L96_A1.4090.95
25_E68_K1.3750.94
9_E159_K1.3130.93
50_V58_V1.3080.93
62_L66_R1.3030.93
106_T154_Q1.2940.92
22_A39_F1.2940.92
55_D71_K1.2790.92
7_V159_K1.2760.92
64_I68_K1.2630.91
56_F60_Q1.2410.91
80_D97_K1.2390.91
50_V96_A1.2350.91
139_D142_A1.2340.90
114_I123_A1.2000.89
6_I132_V1.1920.89
49_K95_E1.1780.88
9_E129_E1.1690.88
2_P134_G1.1440.87
77_S153_G1.1370.86
62_L81_V1.1360.86
19_V41_L1.1300.86
66_R76_G1.1280.86
135_K139_D1.1230.86
113_M116_D1.0710.83
87_H92_W1.0650.83
102_I130_I1.0620.82
47_T97_K1.0590.82
32_F57_Q1.0580.82
26_V33_R1.0420.81
79_L98_L1.0380.81
2_P136_S1.0370.81
111_V122_Q1.0280.80
89_G92_W1.0120.79
25_E72_R1.0100.79
110_I152_L0.9960.78
104_S127_G0.9930.78
84_N94_V0.9910.78
6_I130_I0.9870.78
38_S51_L0.9760.77
52_S91_T0.9750.77
2_P161_F0.9710.76
70_L76_G0.9470.75
14_E25_E0.9420.74
15_A74_I0.9220.73
115_K122_Q0.9200.72
22_A61_L0.9190.72
137_R162_R0.9130.72
113_M146_M0.9090.71
7_V101_G0.9000.71
145_A149_G0.8890.70
106_T153_G0.8870.70
43_D46_K0.8620.67
23_S38_S0.8580.67
99_K106_T0.8510.66
36_E91_T0.8500.66
8_S101_G0.8490.66
113_M117_S0.8390.65
75_E155_P0.8380.65
55_D84_N0.8370.65
142_A149_G0.8350.65
41_L98_L0.8290.64
76_G79_L0.7990.61
60_Q75_E0.7760.59
62_L94_V0.7700.59
74_I78_S0.7640.58
96_A99_K0.7640.58
68_K73_G0.7600.58
48_I98_L0.7590.58
8_S157_Q0.7570.57
121_V134_G0.7520.57
48_I79_L0.7490.56
136_S139_D0.7450.56
10_V78_S0.7450.56
42_N49_K0.7430.56
23_S27_E0.7400.56
56_F64_I0.7390.55
78_S155_P0.7390.55
24_R127_G0.7350.55
14_E68_K0.7330.55
148_R158_F0.7320.55
118_K134_G0.7280.54
15_A98_L0.7220.54
34_N53_E0.7210.54
39_F65_L0.7150.53
121_V139_D0.7120.53
30_F66_R0.7120.53
36_E53_E0.7100.53
124_Q133_T0.7090.52
104_S115_K0.6990.51
109_K113_M0.6960.51
10_V157_Q0.6940.51
87_H91_T0.6920.51
106_T152_L0.6880.50
116_D124_Q0.6860.50
102_I123_A0.6850.50
15_A48_I0.6820.50
24_R93_F0.6740.49
71_K137_R0.6730.49
16_R41_L0.6710.49
40_E149_G0.6690.48
80_D83_E0.6670.48
70_L73_G0.6670.48
53_E91_T0.6660.48
117_S143_V0.6660.48
13_Q20_D0.6580.47
12_L15_A0.6570.47
102_I110_I0.6530.47
21_N72_R0.6480.46
71_K124_Q0.6460.46
38_S98_L0.6440.46
86_V92_W0.6380.45
13_Q74_I0.6360.45
12_L41_L0.6300.44
128_D159_K0.6260.44
60_Q64_I0.6260.44
78_S100_Q0.6250.44
119_L134_G0.6220.44
119_L146_M0.6190.43
15_A78_S0.6190.43
144_M158_F0.6180.43
68_K72_R0.6150.43
58_V84_N0.6130.43
135_K152_L0.6120.43
149_G152_L0.6110.42
81_V96_A0.6110.42
38_S48_I0.6090.42
35_V52_S0.6080.42
33_R91_T0.6060.42
6_I114_I0.6010.41
103_E125_I0.6000.41
48_I65_L0.5990.41
59_N63_D0.5930.41
35_V54_S0.5930.41
40_E51_L0.5900.40
50_V66_R0.5900.40
117_S142_A0.5890.40
103_E109_K0.5890.40
14_E21_N0.5860.40
111_V125_I0.5850.40
10_V74_I0.5820.40
20_D57_Q0.5810.39
54_S92_W0.5800.39
103_E153_G0.5780.39
24_R86_V0.5780.39
10_V100_Q0.5720.39
23_S37_A0.5710.38
33_R156_F0.5660.38
32_F53_E0.5660.38
26_V88_S0.5650.38
147_V154_Q0.5620.38
99_K154_Q0.5620.38
35_V53_E0.5600.37
14_E17_N0.5590.37
26_V83_E0.5590.37
78_S99_K0.5590.37
144_M159_K0.5580.37
30_F60_Q0.5510.37
107_Q125_I0.5480.36
34_N136_S0.5480.36
97_K103_E0.5450.36
28_S33_R0.5440.36
109_K150_G0.5410.36
21_N76_G0.5380.35
59_N94_V0.5330.35
6_I152_L0.5320.35
111_V124_Q0.5320.35
115_K127_G0.5290.34
66_R81_V0.5270.34
22_A74_I0.5270.34
118_K143_V0.5260.34
15_A41_L0.5250.34
68_K71_K0.5210.34
104_S108_K0.5190.34
106_T156_F0.5180.33
49_K97_K0.5170.33
116_D146_M0.5170.33
82_P95_E0.5160.33
30_F136_S0.5160.33
68_K162_R0.5150.33
53_E86_V0.5150.33
34_N134_G0.5140.33
41_L46_K0.5120.33
104_S130_I0.5070.32
105_A108_K0.5070.32
145_A161_F0.5070.32
57_Q60_Q0.5060.32
9_E100_Q0.5030.32
33_R87_H0.5020.32
122_Q130_I0.5020.32
37_A61_L0.5000.32
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1in0A 1 0.9939 100 0.011 Contact Map
1tv8A 2 0.8957 18.1 0.958 Contact Map
1yj7A 3 0.4049 18 0.958 Contact Map
2y9jY 3 0.3926 16.4 0.959 Contact Map
1mp9A 2 0.5092 12.5 0.961 Contact Map
2yqrA 1 0.4969 12.2 0.961 Contact Map
4djgA 2 0.3129 10.6 0.962 Contact Map
4w4mA 1 0.3742 9.6 0.963 Contact Map
3aqoA 1 0.6933 8.8 0.964 Contact Map
1vq8F 1 0.6933 7.7 0.965 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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