GREMLIN Database
YBJQ - UPF0145 protein YbjQ
UniProt: P0A8C1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13686
Length: 107 (102)
Sequences: 1572 (947)
Seq/√Len: 93.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
75_D105_T3.9061.00
18_C104_K3.6351.00
75_D104_K3.0991.00
3_F80_I3.0261.00
16_E104_K2.6091.00
5_T79_G2.5711.00
10_E17_Y2.3691.00
23_G65_L2.2971.00
12_Q105_T2.0131.00
82_I98_V1.9681.00
63_E66_G1.9491.00
62_F82_I1.9061.00
55_R59_E1.8291.00
67_S70_R1.7841.00
9_L105_T1.7781.00
40_R49_A1.7181.00
14_I78_V1.6211.00
3_F66_G1.5451.00
4_S9_L1.5411.00
62_F98_V1.5291.00
74_A102_A1.4991.00
55_R68_Q1.4871.00
46_R51_E1.4561.00
28_G41_D1.4290.99
46_R64_E1.4190.99
63_E67_S1.4190.99
27_L60_I1.3650.99
9_L12_Q1.3270.99
15_V104_K1.3170.99
26_I94_L1.3100.99
31_I42_I1.2990.99
10_E13_T1.2940.99
21_V72_L1.2660.99
36_F49_A1.2630.99
59_E63_E1.2520.99
68_Q71_A1.2360.98
34_D50_Y1.2020.98
67_S71_A1.1920.98
30_N36_F1.1790.98
27_L53_E1.1610.98
7_P79_G1.1590.98
62_F66_G1.1560.98
21_V65_L1.1380.97
60_I63_E1.0890.97
15_V105_T1.0820.96
29_A56_K1.0670.96
69_A74_A1.0330.95
33_R49_A1.0230.95
22_T68_Q1.0210.95
20_V80_I1.0150.95
14_I105_T1.0050.95
7_P78_V0.9970.94
30_N33_R0.9930.94
18_C75_D0.9800.94
25_A60_I0.9580.93
53_E56_K0.9440.93
19_G76_A0.9380.92
35_F39_I0.9140.91
28_G47_S0.9050.91
33_R53_E0.8910.90
61_A98_V0.8900.90
13_T104_K0.8840.90
57_A96_V0.8780.90
6_T78_V0.8670.89
8_T13_T0.8670.89
65_L80_I0.8620.89
66_G77_V0.8490.88
4_S17_Y0.8340.87
65_L77_V0.8330.87
23_G61_A0.8320.87
54_L94_L0.8280.87
32_F36_F0.8200.86
29_A53_E0.8130.86
66_G70_R0.8130.86
37_A54_L0.8080.86
36_F41_D0.7930.84
88_G92_S0.7880.84
82_I97_S0.7870.84
56_K60_I0.7730.83
24_E83_D0.7650.82
41_D47_S0.7630.82
68_Q72_L0.7550.81
23_G58_R0.7540.81
65_L98_V0.7530.81
85_E93_M0.7460.81
81_D99_S0.7410.80
30_N35_F0.7220.78
37_A47_S0.7200.78
8_T79_G0.7180.78
57_A94_L0.7170.78
64_E99_S0.7120.77
40_R53_E0.7090.77
4_S10_E0.7070.77
83_D93_M0.7060.77
31_I35_F0.6980.76
26_I95_M0.6860.75
84_Y99_S0.6840.75
40_R43_V0.6810.74
52_K56_K0.6770.74
95_M99_S0.6700.73
41_D88_G0.6650.73
78_V103_V0.6650.73
6_T10_E0.6590.72
24_E84_Y0.6590.72
13_T16_E0.6580.72
40_R47_S0.6520.71
40_R48_G0.6450.70
6_T17_Y0.6420.70
87_V92_S0.6360.69
83_D97_S0.6280.68
29_A52_K0.6250.68
36_F39_I0.6190.67
4_S8_T0.6180.67
38_G41_D0.6160.67
5_T14_I0.6120.66
18_C72_L0.6100.66
8_T78_V0.6100.66
76_A105_T0.6070.66
36_F43_V0.6050.65
84_Y97_S0.6030.65
50_Y87_V0.6020.65
21_V102_A0.6020.65
28_G54_L0.5990.65
6_T79_G0.5970.64
88_G93_M0.5950.64
30_N34_D0.5920.64
49_A52_K0.5820.62
19_G72_L0.5790.62
36_F48_G0.5740.61
31_I43_V0.5730.61
89_Q92_S0.5690.61
28_G34_D0.5650.60
51_E64_E0.5640.60
33_R40_R0.5630.60
9_L73_G0.5620.60
24_E54_L0.5590.59
24_E97_S0.5520.58
31_I56_K0.5390.57
22_T97_S0.5360.56
29_A33_R0.5290.55
14_I17_Y0.5280.55
49_A55_R0.5240.54
69_A77_V0.5190.54
14_I103_V0.5150.53
14_I59_E0.5150.53
85_E95_M0.5120.53
30_N49_A0.5120.53
7_P81_D0.5110.53
40_R51_E0.5110.53
81_D85_E0.5090.52
37_A46_R0.5020.51
7_P10_E0.5000.51
10_E26_I0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1y2iA 3 0.9907 100 0.055 Contact Map
1vr4A 3 0.9626 100 0.081 Contact Map
3qkbA 3 0.8318 100 0.277 Contact Map
2jz7A 3 0.6449 99.9 0.424 Contact Map
2y1bA 1 0.7757 99 0.681 Contact Map
3ox4A 2 0.8972 17.3 0.923 Contact Map
1rrmA 2 0.9065 12.8 0.927 Contact Map
4qgsA 2 0.8692 10.1 0.93 Contact Map
4o5fA 2 0.9533 9.1 0.932 Contact Map
3uhjA 5 0.8131 7.1 0.935 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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