GREMLIN Database
TATE - Sec-independent protein translocase protein TatE
UniProt: P0A843 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11305
Length: 67 (59)
Sequences: 799 (536)
Seq/√Len: 69.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_K11_V2.8941.00
50_A53_G2.0951.00
49_A52_K1.9051.00
1_M13_A1.8571.00
17_V22_T1.8031.00
13_A35_A1.7501.00
41_K45_D1.7251.00
4_I9_L1.6971.00
14_A17_V1.6340.99
4_I8_K1.6320.99
30_G38_G1.6260.99
46_D49_A1.5110.99
51_K54_A1.4360.98
56_V59_Q1.4320.98
18_L28_L1.4310.98
30_G35_A1.4260.98
52_K56_V1.4120.98
55_D58_L1.4100.98
26_R34_A1.4040.98
23_K30_G1.3630.98
3_E9_L1.3400.98
45_D48_A1.3260.97
8_K16_V1.3150.97
41_K44_N1.3030.97
26_R30_G1.2800.97
19_L42_A1.2090.96
9_L19_L1.2020.95
24_K36_I1.1890.95
1_M9_L1.1790.95
23_K26_R1.1330.94
52_K57_D1.1200.93
53_G56_V1.1060.93
9_L42_A1.0230.90
41_K47_D1.0090.89
27_T49_A0.9970.89
12_V15_L0.9790.88
2_G7_T0.9770.87
32_L38_G0.9660.87
38_G43_M0.9610.87
8_K15_L0.9560.86
52_K55_D0.9460.86
2_G6_I0.8870.82
54_A57_D0.8640.80
1_M8_K0.8550.79
51_K57_D0.8240.77
54_A59_Q0.8210.77
17_V24_K0.8020.75
24_K35_A0.7950.74
51_K55_D0.7930.74
36_I42_A0.7860.73
28_L38_G0.7840.73
30_G42_A0.7710.72
48_A51_K0.7690.72
3_E8_K0.7680.72
26_R45_D0.7520.70
50_A54_A0.7450.69
53_G58_L0.7100.66
12_V19_L0.7060.65
9_L15_L0.6930.64
14_A18_L0.6820.63
24_K34_A0.6710.61
15_L28_L0.6690.61
43_M53_G0.6600.60
13_A43_M0.6540.59
2_G9_L0.6530.59
34_A40_K0.6080.54
38_G42_A0.6070.54
18_L42_A0.6060.54
50_A58_L0.6040.53
3_E11_V0.6000.53
49_A53_G0.5990.53
53_G57_D0.5870.51
55_D59_Q0.5850.51
7_T11_V0.5810.51
29_G38_G0.5790.50
52_K59_Q0.5790.50
51_K56_V0.5770.50
23_K36_I0.5700.49
8_K12_V0.5700.49
13_A23_K0.5650.49
48_A55_D0.5290.44
4_I19_L0.5270.44
2_G23_K0.5240.44
28_L34_A0.5230.44
10_L32_L0.5030.41
1_M34_A0.5030.41
18_L22_T0.5020.41
41_K46_D0.5000.41
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2mn6B 2 0.6866 99.4 0.508 Contact Map
2l16A 1 0.7612 99.4 0.511 Contact Map
2mi2A 1 1 99.1 0.564 Contact Map
2lzrA 1 0.7313 99.1 0.565 Contact Map
4rxjA 2 0.9851 32.8 0.888 Contact Map
4ns5A 1 0.8955 27.3 0.892 Contact Map
4fu6A 1 0.791 16.4 0.903 Contact Map
1ri0A 1 0.8507 13.5 0.906 Contact Map
3j0cA 4 0.403 13.3 0.907 Contact Map
3qbyA 3 0.8209 12.7 0.907 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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