GREMLIN Database
RS9 - 30S ribosomal protein S9
UniProt: P0A7X3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10908
Length: 130 (126)
Sequences: 2839 (1237)
Seq/√Len: 110.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
118_L124_R4.5471.00
65_I79_I2.9541.00
84_T104_V2.8461.00
19_V82_G2.7131.00
88_M104_V2.4941.00
118_L125_P2.3891.00
111_V120_K2.3761.00
119_R125_P2.2321.00
120_K123_R2.1471.00
61_L90_Y2.0951.00
36_E45_R2.0331.00
50_Q103_F2.0201.00
7_Y20_F1.9411.00
96_S100_K1.9311.00
42_E45_R1.8861.00
26_G62_D1.8171.00
5_Q20_F1.8141.00
14_S110_Q1.8121.00
50_Q80_R1.7941.00
95_R99_R1.7791.00
27_K62_D1.7201.00
52_L63_L1.7191.00
11_R85_R1.7191.00
35_L45_R1.7121.00
27_K34_S1.6881.00
22_K64_Y1.6871.00
88_M95_R1.6391.00
119_R123_R1.6231.00
53_E58_V1.6061.00
40_G45_R1.5541.00
5_Q22_K1.5301.00
54_L101_A1.5171.00
24_G62_D1.4691.00
55_V94_L1.4461.00
33_R37_Q1.4421.00
39_F79_I1.4321.00
57_M94_L1.4261.00
67_V79_I1.3931.00
35_L48_V1.3671.00
47_V50_Q1.3511.00
25_N62_D1.3271.00
73_S77_G1.2950.99
77_G80_R1.2600.99
34_S37_Q1.2020.99
111_V114_K1.1840.99
8_G86_A1.1730.99
57_M60_K1.1700.99
119_R124_R1.1160.98
23_P60_K1.0860.98
29_V64_Y1.0800.98
57_M61_L1.0790.98
12_R77_G1.0760.98
11_R16_A1.0700.98
49_R58_V1.0690.98
112_E115_K1.0440.97
120_K125_P1.0320.97
55_V98_L1.0260.97
82_G106_R1.0100.97
47_V77_G0.9960.96
21_I86_A0.9930.96
80_R103_F0.9870.96
11_R110_Q0.9680.96
70_G74_G0.9650.96
22_K62_D0.9610.96
48_V51_P0.9480.95
11_R81_H0.9310.95
21_I63_L0.9250.95
40_G72_I0.9220.95
46_M50_Q0.9150.94
9_T82_G0.9090.94
74_G77_G0.9090.94
120_K124_R0.9070.94
116_V127_F0.8960.94
32_Q66_T0.8870.93
84_T88_M0.8840.93
49_R52_L0.8790.93
57_M91_D0.8730.93
18_R66_T0.8700.93
41_R44_A0.8680.93
90_Y94_L0.8640.92
20_F66_T0.8560.92
44_A72_I0.8530.92
6_Y90_Y0.8520.92
114_K120_K0.8490.92
47_V76_A0.8460.92
41_R72_I0.8440.92
15_S74_G0.8270.91
8_G89_E0.8270.91
105_T108_A0.8140.90
111_V123_R0.8130.90
99_R105_T0.8110.90
54_L103_F0.8100.90
114_K119_R0.8010.89
28_I35_L0.7960.89
25_N46_M0.7920.89
95_R104_V0.7880.89
15_S70_G0.7860.88
33_R40_G0.7790.88
7_Y66_T0.7770.88
42_E46_M0.7760.88
48_V76_A0.7760.88
81_H106_R0.7740.88
88_M94_L0.7740.88
91_D94_L0.7740.88
17_A67_V0.7730.88
97_E101_A0.7720.88
29_V34_S0.7690.87
36_E49_R0.7660.87
8_G19_V0.7640.87
54_L97_E0.7600.87
44_A73_S0.7530.86
29_V32_Q0.7400.85
88_M99_R0.7370.85
6_Y21_I0.7340.85
7_Y18_R0.7280.84
49_R53_E0.7270.84
6_Y88_M0.7240.84
116_V125_P0.7220.84
52_L59_E0.7210.84
123_R127_F0.7130.83
47_V103_F0.7120.83
18_R67_V0.7100.83
21_I61_L0.7080.83
43_T46_M0.6900.81
35_L40_G0.6860.81
30_I39_F0.6780.80
55_V58_V0.6730.79
10_G16_A0.6690.79
22_K90_Y0.6660.79
111_V119_R0.6580.78
29_V66_T0.6480.77
19_V123_R0.6450.76
52_L57_M0.6440.76
46_M49_R0.6370.76
40_G44_A0.6340.75
30_I34_S0.6320.75
39_F48_V0.6320.75
85_R106_R0.6300.75
97_E100_K0.6190.73
46_M53_E0.6180.73
17_A30_I0.6170.73
45_R48_V0.6090.72
114_K118_L0.6070.72
47_V80_R0.6050.72
39_F73_S0.6040.72
119_R127_F0.6020.71
28_I48_V0.6020.71
92_E97_E0.5980.71
10_G17_A0.5970.71
42_E72_I0.5950.71
114_K117_G0.5910.70
92_E99_R0.5890.70
122_R130_R0.5840.69
81_H85_R0.5770.68
10_G81_H0.5760.68
52_L61_L0.5720.68
15_S78_A0.5690.67
52_L83_I0.5670.67
119_R126_Q0.5670.67
17_A79_I0.5600.66
8_G21_I0.5600.66
9_T98_L0.5590.66
20_F64_Y0.5590.66
118_L123_R0.5580.66
39_F113_R0.5560.65
111_V116_V0.5550.65
90_Y96_S0.5550.65
50_Q127_F0.5510.65
20_F111_V0.5490.64
98_L106_R0.5480.64
5_Q64_Y0.5450.64
67_V72_I0.5440.64
33_R110_Q0.5430.64
20_F74_G0.5410.63
38_Y113_R0.5410.63
16_A116_V0.5370.63
60_K68_K0.5350.62
119_R128_S0.5320.62
99_R104_V0.5300.62
28_I49_R0.5290.62
41_R73_S0.5200.60
83_I98_L0.5160.60
16_A68_K0.5130.59
33_R74_G0.5110.59
21_I83_I0.5070.58
42_E76_A0.5060.58
8_G87_L0.5050.58
120_K128_S0.5010.57
14_S81_H0.5000.57
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5I 1 0.9769 100 0.034 Contact Map
4tp8I 1 0.9769 100 0.04 Contact Map
3bbnI 1 0.9692 100 0.042 Contact Map
5aj3I 1 0.9923 100 0.052 Contact Map
4bpeI 1 0.9923 100 0.071 Contact Map
3j60Q 1 0.8692 100 0.072 Contact Map
3j7aM 1 0.9615 100 0.074 Contact Map
4ujpR 1 0.9846 100 0.076 Contact Map
4w23Q 1 0.9846 100 0.076 Contact Map
3j20K 1 0.9769 100 0.083 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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