GREMLIN Database
RS5 - 30S ribosomal protein S5
UniProt: P0A7W1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10904
Length: 167 (156)
Sequences: 2371 (1023)
Seq/√Len: 81.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
12_Q42_G3.5671.00
159_K163_E3.1971.00
142_D146_N3.0931.00
41_D45_R2.8861.00
37_T63_A2.7881.00
100_S124_L2.7311.00
87_G142_D2.6851.00
24_T31_F2.5571.00
148_N156_K2.4701.00
79_G122_N2.2161.00
12_Q117_V2.0991.00
58_A61_Q2.0581.00
142_D145_E2.0481.00
48_F137_V2.0411.00
115_L120_V1.9761.00
34_T50_Y1.9601.00
24_T29_R1.9241.00
81_L96_M1.9131.00
48_F141_I1.8961.00
81_L147_M1.8731.00
160_S163_E1.8691.00
16_I137_V1.8251.00
81_L123_V1.8181.00
101_E122_N1.7411.00
48_F138_R1.7221.00
11_L45_R1.7071.00
76_L120_V1.7071.00
84_P98_P1.7051.00
45_R71_M1.7021.00
19_N34_T1.6881.00
50_Y134_I1.6771.00
115_L123_V1.6711.00
103_T124_L1.6361.00
79_G121_H1.6121.00
64_M68_R1.5971.00
33_F56_V1.5901.00
86_K93_R1.5901.00
111_M125_A1.5891.00
25_V30_I1.5721.00
45_R73_N1.5050.99
149_S152_M1.4410.99
85_V146_N1.4320.99
9_G45_R1.4280.99
84_P97_Q1.4240.99
66_K70_N1.4140.99
35_A59_A1.4070.99
88_V93_R1.3820.99
127_A136_V1.3300.99
111_M115_L1.3110.98
20_R31_F1.3060.98
15_L18_V1.3030.98
82_Q147_M1.2880.98
95_F128_Y1.2860.98
76_L79_G1.2860.98
99_A103_T1.2720.98
21_V32_S1.2720.98
15_L37_T1.2540.98
92_S127_A1.2460.98
72_I145_E1.2340.98
61_Q65_E1.2290.98
43_N76_L1.2140.97
86_K95_F1.2060.97
22_S31_F1.2030.97
85_V96_M1.2020.97
49_G66_K1.1790.97
13_E64_M1.1770.97
72_I141_I1.1610.97
80_T122_N1.1320.96
127_A131_T1.1280.96
96_M143_G1.1170.96
152_M155_A1.0890.95
150_P161_V1.0750.95
11_L71_M1.0560.94
38_V114_V1.0520.94
17_A34_T1.0230.93
74_V118_A1.0010.92
92_S130_S0.9920.92
134_I138_R0.9860.92
96_M140_T0.9850.92
15_L35_A0.9620.91
77_N150_P0.9570.90
32_S54_R0.9490.90
85_V147_M0.9430.90
50_Y63_A0.9370.90
78_N122_N0.9270.89
87_G92_S0.9210.89
82_Q150_P0.9080.88
30_I54_R0.9050.88
32_S124_L0.9000.88
16_I38_V0.8950.87
89_H138_R0.8920.87
38_V137_V0.8910.87
114_V137_V0.8900.87
46_V141_I0.8840.87
11_L39_V0.8640.85
8_A11_L0.8600.85
18_V55_E0.8570.85
148_N152_M0.8560.85
11_L43_N0.8520.85
38_V117_V0.8480.84
37_T64_M0.8440.84
151_E155_A0.8430.84
110_A137_V0.8400.84
105_I115_L0.8380.84
52_K62_K0.8340.83
75_A82_Q0.8310.83
46_V118_A0.8290.83
114_V140_T0.8220.82
156_K159_K0.8220.82
103_T106_I0.8180.82
89_H142_D0.8090.81
92_S128_Y0.8040.81
44_G76_L0.8030.81
50_Y132_N0.8020.81
24_T27_G0.8000.81
56_V60_I0.7920.80
15_L60_I0.7870.80
18_V57_P0.7780.79
51_G66_K0.7750.78
135_N138_R0.7730.78
10_E43_N0.7660.78
110_A136_V0.7640.77
93_R129_G0.7590.77
28_G40_G0.7490.76
35_A56_V0.7370.75
87_G139_A0.7350.75
92_S136_V0.7290.74
72_I75_A0.7280.74
18_V56_V0.7230.74
79_G101_E0.7180.73
107_A125_A0.7150.73
73_N76_L0.7140.73
46_V72_I0.7100.72
76_L122_N0.7060.72
96_M125_A0.7030.71
92_S131_T0.6950.71
104_G119_G0.6940.70
31_F34_T0.6940.70
22_S30_I0.6930.70
140_T144_L0.6920.70
51_G62_K0.6910.70
94_V139_A0.6900.70
29_R135_N0.6890.70
20_R33_F0.6890.70
53_A103_T0.6850.69
20_R27_G0.6820.69
18_V35_A0.6770.69
17_A134_I0.6750.68
42_G117_V0.6750.68
152_M156_K0.6750.68
110_A114_V0.6730.68
49_G70_N0.6730.68
107_A126_K0.6710.68
42_G116_E0.6700.68
16_I130_S0.6690.68
105_I137_V0.6620.67
14_K117_V0.6600.67
9_G68_R0.6570.66
35_A60_I0.6510.66
77_N80_T0.6510.66
46_V114_V0.6510.66
46_V73_N0.6490.65
154_A158_G0.6450.65
22_S29_R0.6390.64
76_L118_A0.6370.64
74_V120_V0.6360.64
9_G43_N0.6340.63
14_K133_P0.6330.63
39_V67_A0.6320.63
42_G121_H0.6240.62
91_G130_S0.6210.62
106_I132_N0.6180.62
10_E18_V0.6120.61
50_Y138_R0.6080.60
129_G156_K0.6050.60
154_A161_V0.6040.60
9_G71_M0.5990.59
52_K126_K0.5960.59
21_V51_G0.5960.59
85_V143_G0.5960.59
32_S50_Y0.5900.58
115_L125_A0.5880.58
16_I49_G0.5880.58
107_A123_V0.5870.58
16_I48_F0.5870.58
15_L63_A0.5850.57
12_Q71_M0.5840.57
22_S25_V0.5830.57
114_V141_I0.5830.57
103_T108_G0.5820.57
51_G59_A0.5810.57
111_M136_V0.5800.57
17_A43_N0.5760.56
31_F54_R0.5760.56
113_A116_E0.5700.55
12_Q66_K0.5700.55
154_A159_K0.5690.55
8_A77_N0.5680.55
14_K113_A0.5650.55
41_D71_M0.5650.55
138_R145_E0.5620.54
50_Y58_A0.5600.54
120_V123_V0.5580.54
86_K146_N0.5570.54
88_V155_A0.5520.53
44_G49_G0.5500.53
94_V111_M0.5460.52
87_G94_V0.5440.52
125_A132_N0.5390.51
39_V114_V0.5380.51
30_I56_V0.5370.51
93_R128_Y0.5370.51
71_M141_I0.5350.51
132_N144_L0.5340.51
41_D77_N0.5340.51
74_V145_E0.5340.51
115_L118_A0.5320.50
19_N50_Y0.5310.50
9_G161_V0.5270.50
51_G63_A0.5250.50
86_K143_G0.5200.49
48_F134_I0.5170.48
13_E39_V0.5160.48
59_A121_H0.5110.48
145_E149_S0.5100.48
128_Y131_T0.5080.47
26_K47_G0.5070.47
51_G136_V0.5070.47
29_R65_E0.5070.47
19_N65_E0.5020.47
53_A59_A0.5020.47
46_V74_V0.5010.46
63_A92_S0.5000.46
23_K90_T0.5000.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4kiyE 1 0.8982 100 0.025 Contact Map
3bbnE 1 0.9401 100 0.045 Contact Map
4rb5E 1 0.8862 100 0.047 Contact Map
5aj3E 1 1 100 0.057 Contact Map
4tp8E 1 0.8982 100 0.082 Contact Map
1pkpA 2 0.8683 100 0.109 Contact Map
3j20F 1 0.9162 100 0.116 Contact Map
4bpeE 1 1 100 0.142 Contact Map
4kzyC 1 1 100 0.143 Contact Map
3j80C 1 1 100 0.145 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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