GREMLIN Database
RS20 - 30S ribosomal protein S20
UniProt: P0A7U7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10919
Length: 87 (85)
Sequences: 2249 (1230)
Seq/√Len: 133.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_V83_I3.2971.00
43_D46_A3.1131.00
2_A11_A2.6731.00
59_D76_K2.6531.00
14_S18_R2.5861.00
33_K37_A2.2861.00
71_K75_H1.9891.00
8_K12_I1.9141.00
27_M57_I1.8801.00
28_M67_I1.8381.00
36_Y82_Q1.8201.00
44_K48_Q1.8011.00
26_S30_T1.7331.00
18_R22_A1.6281.00
51_F55_Q1.6271.00
62_A72_A1.5061.00
15_E18_R1.4371.00
46_A50_A1.4191.00
45_A49_K1.4041.00
51_F83_I1.3791.00
67_I71_K1.3661.00
56_P60_R1.3581.00
58_V72_A1.3581.00
24_R66_L1.3521.00
74_R78_N1.3281.00
45_A48_Q1.3071.00
53_E57_I1.2771.00
48_Q52_N1.2651.00
35_V39_I1.2611.00
10_R14_S1.2471.00
36_Y40_E1.2311.00
15_E19_K1.2221.00
20_H24_R1.2121.00
35_V51_F1.2111.00
51_F80_T1.1980.99
46_A49_K1.1980.99
81_A85_K1.1930.99
49_K52_N1.1650.99
82_Q85_K1.1570.99
27_M31_F1.1300.99
55_Q80_T1.1120.99
4_I8_K1.0900.99
30_T34_K1.0720.99
39_I82_Q1.0500.99
10_R13_Q1.0350.99
62_A67_I1.0350.99
13_Q17_A1.0210.98
16_K20_H0.9840.98
49_K53_E0.9740.98
60_R63_A0.9490.97
80_T84_N0.9230.97
28_M61_Q0.9130.97
70_N76_K0.9050.97
11_A15_E0.8930.96
50_A54_M0.8920.96
40_E82_Q0.8870.96
11_A14_S0.8810.96
38_A50_A0.8770.96
19_K23_S0.8760.96
35_V54_M0.8730.96
31_F57_I0.8680.96
67_I72_A0.8650.96
32_I58_V0.8620.95
43_D47_A0.8370.95
81_A84_N0.8290.94
35_V79_L0.8240.94
23_S27_M0.8200.94
73_A77_A0.8190.94
56_P63_A0.8140.94
58_V79_L0.7860.93
24_R61_Q0.7600.91
7_A14_S0.7590.91
52_N56_P0.7410.90
39_I83_I0.7190.89
19_K22_A0.7180.89
52_N55_Q0.7160.89
38_A46_A0.7160.89
36_Y78_N0.7090.88
8_K11_A0.6890.87
5_K12_I0.6870.87
47_A83_I0.6840.86
21_N24_R0.6810.86
32_I36_Y0.6780.86
36_Y75_H0.6740.86
4_I7_A0.6720.85
55_Q59_D0.6680.85
14_S17_A0.6630.85
52_N77_A0.6630.85
35_V50_A0.6610.84
31_F54_M0.6570.84
74_R79_L0.6550.84
55_Q76_K0.6400.83
12_I16_K0.6330.82
27_M30_T0.6280.81
34_K53_E0.6250.81
4_I12_I0.6150.80
75_H79_L0.6090.79
57_I61_Q0.6050.79
4_I11_A0.6020.79
7_A71_K0.6000.78
73_A76_K0.5980.78
34_K46_A0.5960.78
7_A10_R0.5950.78
29_R75_H0.5920.77
23_S26_S0.5830.76
38_A43_D0.5820.76
38_A47_A0.5710.75
53_E56_P0.5690.75
4_I13_Q0.5690.75
31_F34_K0.5620.74
6_S61_Q0.5580.73
13_Q16_K0.5540.73
7_A13_Q0.5500.72
14_S74_R0.5470.72
34_K37_A0.5460.72
58_V74_R0.5400.71
24_R64_K0.5330.70
34_K50_A0.5270.69
26_S31_F0.5250.69
7_A74_R0.5240.68
28_M66_L0.5180.68
5_K8_K0.5110.67
6_S10_R0.5100.66
22_A66_L0.5100.66
31_F53_E0.5090.66
58_V61_Q0.5060.66
62_A76_K0.5030.65
59_D62_A0.5000.65
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5T 1 0.977 100 0.043 Contact Map
3bbnT 1 1 100 0.049 Contact Map
4tp8T 1 0.977 100 0.092 Contact Map
3osrA 1 0.4713 13.8 0.909 Contact Map
4qinA 2 0.908 11 0.913 Contact Map
4bujB 1 0.7356 9.4 0.916 Contact Map
4lcbA 1 0 4.9 0.926 Contact Map
2ifuA 1 0.5517 3.9 0.929 Contact Map
1vykA 1 0.7011 3.5 0.931 Contact Map
3ro2A 1 0.6552 3.4 0.931 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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