GREMLIN Database
RS13 - 30S ribosomal protein S13
UniProt: P0A7S9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10912
Length: 118 (114)
Sequences: 2425 (1001)
Seq/√Len: 93.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
43_V52_Q4.7741.00
80_L87_R4.1821.00
101_R104_T3.7131.00
37_A59_E2.6371.00
15_A45_I2.6061.00
29_R63_F2.5551.00
68_D71_R2.4121.00
89_L93_R2.3051.00
52_Q55_T2.1591.00
16_V31_K2.1381.00
72_E76_S2.1151.00
16_V41_E2.0981.00
36_A59_E2.0591.00
29_R32_A2.0521.00
32_A36_A2.0461.00
15_A48_L1.9501.00
18_A45_I1.8451.00
59_E62_K1.8321.00
20_T27_K1.8181.00
84_G92_R1.7371.00
9_I18_A1.7231.00
35_A41_E1.6691.00
17_I20_T1.6501.00
38_G55_T1.6331.00
8_N11_D1.6151.00
64_V72_E1.5821.00
16_V27_K1.5601.00
12_H46_S1.5441.00
60_V65_V1.4771.00
28_T32_A1.4761.00
58_D62_K1.4621.00
15_A39_I1.4431.00
14_H42_D1.4020.99
75_M78_K1.3500.99
31_K41_E1.3380.99
49_S52_Q1.3270.99
2_A45_I1.3230.99
27_K31_K1.2610.99
57_R61_A1.2550.99
40_A43_V1.2340.98
107_R111_G1.2110.98
14_H44_K1.1680.98
51_G55_T1.1640.98
80_L85_C1.1450.98
31_K35_A1.1440.97
81_M92_R1.1380.97
27_K30_S1.1180.97
5_A57_R1.1000.97
79_R87_R1.0940.97
25_V60_V1.0920.97
4_I53_I1.0830.97
96_P106_A1.0680.96
15_A34_L1.0520.96
17_I27_K1.0240.95
59_E63_F0.9920.94
74_S78_K0.9830.94
23_Y73_I0.9620.93
58_D61_A0.9620.93
11_D18_A0.9590.93
2_A9_I0.9530.93
84_G89_L0.9520.93
78_K82_D0.9220.92
18_A21_S0.8970.91
32_A63_F0.8720.89
5_A60_V0.8530.88
9_I45_I0.8520.88
16_V30_S0.8380.87
97_V109_R0.8340.87
32_A35_A0.8310.87
33_I59_E0.8170.86
30_S34_L0.8070.85
48_L71_R0.8040.85
23_Y70_R0.7760.83
43_V47_E0.7760.83
67_G111_G0.7720.83
48_L53_I0.7670.82
36_A62_K0.7590.82
54_D58_D0.7530.81
13_K21_S0.7480.81
55_T58_D0.7470.81
7_I66_E0.7460.81
73_I77_I0.7410.80
8_N54_D0.7290.79
57_R75_M0.7190.78
78_K81_M0.7160.78
11_D46_S0.7160.78
109_R112_P0.7150.78
10_P21_S0.7140.78
20_T29_R0.7100.77
61_A113_R0.7040.77
46_S58_D0.6980.76
87_R98_R0.6930.76
41_E56_L0.6890.75
75_M103_K0.6890.75
34_L56_L0.6840.75
66_E70_R0.6830.75
8_N40_A0.6810.74
5_A65_V0.6730.73
11_D15_A0.6680.73
2_A53_I0.6620.72
39_I43_V0.6560.72
50_E53_I0.6560.72
5_A61_A0.6530.71
15_A43_V0.6510.71
11_D53_I0.6470.70
93_R101_R0.6460.70
24_G69_L0.6450.70
14_H21_S0.6450.70
4_I9_I0.6390.70
16_V42_D0.6370.69
10_P13_K0.6340.69
14_H40_A0.6310.69
6_G84_G0.6270.68
96_P105_N0.6250.68
56_L98_R0.6240.68
50_E54_D0.6240.68
3_R107_R0.6240.68
8_N94_G0.6240.68
94_G114_K0.6170.67
48_L68_D0.6150.67
85_C89_L0.6150.67
34_L39_I0.6140.66
14_H34_L0.6120.66
94_G112_P0.6120.66
69_L102_T0.6110.66
46_S61_A0.6080.66
81_M94_G0.6030.65
15_A44_K0.6000.65
7_I47_E0.5920.64
88_G91_H0.5910.64
104_T114_K0.5890.63
54_D114_K0.5870.63
6_G66_E0.5760.62
9_I16_V0.5740.61
2_A93_R0.5730.61
81_M103_K0.5630.60
69_L72_E0.5620.60
94_G97_V0.5620.60
22_I86_Y0.5590.59
85_C97_V0.5580.59
54_D61_A0.5480.58
46_S62_K0.5470.58
8_N83_L0.5460.58
49_S72_E0.5420.57
37_A56_L0.5420.57
92_R109_R0.5420.57
28_T31_K0.5410.57
86_Y91_H0.5390.57
46_S114_K0.5370.56
3_R8_N0.5370.56
11_D56_L0.5370.56
86_Y96_P0.5350.56
43_V46_S0.5350.56
86_Y93_R0.5340.56
8_N12_H0.5330.56
33_I63_F0.5310.55
106_A109_R0.5290.55
12_H44_K0.5280.55
29_R59_E0.5260.55
33_I56_L0.5250.55
89_L110_K0.5170.53
6_G104_T0.5160.53
64_V97_V0.5160.53
53_I68_D0.5140.53
66_E96_P0.5120.53
63_F72_E0.5090.52
36_A60_V0.5080.52
15_A50_E0.5080.52
105_N110_K0.5060.52
13_K17_I0.5060.52
54_D103_K0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5M 1 0.9915 100 0.059 Contact Map
3j7aS 1 0.8729 100 0.089 Contact Map
4bpeM 1 1 100 0.089 Contact Map
3zeyM 1 1 100 0.09 Contact Map
3j60S 1 1 100 0.09 Contact Map
4tp8M 1 0.9661 100 0.092 Contact Map
3j20O 1 1 100 0.093 Contact Map
4ujpT 1 0.9322 100 0.098 Contact Map
3j38S 1 0.9153 100 0.104 Contact Map
3bbnM 1 0.839 100 0.168 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0061 seconds.