GREMLIN Database
RS11 - 30S ribosomal protein S11
UniProt: P0A7R9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10910
Length: 129 (121)
Sequences: 1673 (656)
Seq/√Len: 59.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
33_T41_A3.9981.00
19_G79_I3.9221.00
36_D40_N3.6841.00
20_V85_M3.6791.00
82_L105_F3.1351.00
83_E108_T2.7931.00
45_A69_R2.7491.00
83_E109_N2.7471.00
21_A34_I2.6681.00
70_C74_V2.5491.00
71_A103_A2.4061.00
69_R73_A2.3971.00
14_K77_Y2.2761.00
21_A82_L2.2341.00
81_N106_R2.1151.00
45_A49_G2.0861.00
18_D81_N2.0381.00
34_I70_C1.8641.00
42_L79_I1.8511.00
23_I96_T1.8301.00
75_K80_K1.6530.99
100_L105_F1.6230.99
42_L77_Y1.6100.99
72_D75_K1.6070.99
84_V100_L1.5950.99
16_V42_L1.5900.99
15_Q77_Y1.5720.99
16_V77_Y1.5240.98
32_V70_C1.5160.98
67_A71_A1.5060.98
85_M113_V1.4820.98
30_T58_S1.4730.98
86_V97_I1.4380.97
27_F89_P1.4090.97
55_S58_S1.4030.97
21_A100_L1.4000.97
34_I74_V1.3960.97
8_A12_V1.2210.94
22_H35_T1.2100.93
43_G70_C1.2090.93
49_G69_R1.2000.93
30_T63_A1.1910.93
72_D76_E1.1280.90
45_A50_S1.0980.89
81_N108_T1.0890.89
22_H113_V1.0670.88
18_D37_R1.0430.87
12_V73_A1.0130.85
50_S65_V1.0060.85
50_S61_F1.0030.84
47_A50_S0.9900.84
25_A92_G0.9800.83
85_M111_T0.9750.83
24_H31_I0.9700.82
101_N107_I0.9620.82
34_I100_L0.9530.81
117_P120_G0.9470.81
85_M109_N0.9310.80
54_G57_K0.9140.78
71_A105_F0.9100.78
86_V96_T0.8950.77
61_F65_V0.8830.76
17_S37_R0.8750.75
49_G73_A0.8660.75
51_G69_R0.8650.75
8_A11_R0.8620.74
25_A98_R0.8620.74
10_K15_Q0.8600.74
97_I106_R0.8590.74
28_N57_K0.8540.74
46_T88_G0.8450.73
63_A92_G0.8450.73
57_K109_N0.8240.71
27_F58_S0.8130.70
27_F68_E0.8050.69
34_I105_F0.8020.69
36_D102_A0.7840.67
24_H127_R0.7700.66
13_R95_S0.7690.66
30_T56_R0.7690.66
93_R112_D0.7670.65
24_H111_T0.7660.65
52_F64_Q0.7570.64
94_E98_R0.7470.63
22_H85_M0.7410.63
12_V56_R0.7380.62
17_S41_A0.7360.62
72_D85_M0.7320.62
20_V37_R0.7250.61
10_K13_R0.7240.61
17_S38_Q0.7200.60
52_F127_R0.7150.60
92_G114_T0.7140.60
60_P91_P0.7110.59
26_S91_P0.7080.59
23_I97_I0.7050.59
118_H121_C0.7020.58
120_G125_K0.7010.58
12_V77_Y0.6990.58
57_K86_V0.6970.58
89_P95_S0.6950.58
41_A44_W0.6940.58
74_V77_Y0.6880.57
82_L107_I0.6870.57
87_K113_V0.6810.56
12_V86_V0.6800.56
13_R77_Y0.6800.56
29_N120_G0.6790.56
51_G88_G0.6710.55
31_I121_C0.6640.54
25_A97_I0.6630.54
44_W118_H0.6610.54
32_V43_G0.6570.54
16_V36_D0.6510.53
36_D42_L0.6450.52
46_T51_G0.6430.52
48_G118_H0.6360.51
24_H91_P0.6340.51
8_A17_S0.6330.51
9_R12_V0.6320.51
70_C77_Y0.6320.51
23_I113_V0.6230.50
120_G123_P0.6220.50
35_T39_G0.6180.49
21_A26_S0.6160.49
15_Q36_D0.6140.49
12_V15_Q0.6140.49
50_S69_R0.6110.48
68_E72_D0.6020.47
75_K79_I0.6020.47
92_G112_D0.6010.47
64_Q93_R0.5980.47
15_Q79_I0.5960.47
79_I96_T0.5940.46
117_P121_C0.5900.46
31_I46_T0.5890.46
52_F57_K0.5850.45
92_G104_G0.5830.45
17_S79_I0.5810.45
52_F114_T0.5790.45
107_I111_T0.5790.45
25_A60_P0.5730.44
30_T92_G0.5630.43
37_R41_A0.5620.43
15_Q126_K0.5600.43
56_R118_H0.5600.43
18_D86_V0.5560.42
58_S66_A0.5560.42
42_L57_K0.5540.42
70_C82_L0.5540.42
54_G88_G0.5530.42
71_A75_K0.5520.42
53_R73_A0.5520.42
25_A65_V0.5510.42
25_A93_R0.5500.42
23_I28_N0.5500.42
52_F62_A0.5490.42
12_V17_S0.5480.41
60_P99_A0.5460.41
119_N125_K0.5460.41
88_G125_K0.5420.41
27_F56_R0.5410.41
99_A105_F0.5400.41
54_G119_N0.5380.40
81_N95_S0.5380.40
24_H33_T0.5320.40
32_V96_T0.5320.40
21_A97_I0.5290.39
50_S127_R0.5290.39
37_R56_R0.5280.39
71_A82_L0.5270.39
26_S83_E0.5230.39
79_I82_L0.5190.38
8_A72_D0.5180.38
58_S91_P0.5170.38
23_I57_K0.5150.38
9_R38_Q0.5140.38
72_D103_A0.5120.38
33_T42_L0.5090.37
33_T124_P0.5090.37
50_S66_A0.5090.37
61_F68_E0.5000.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5K 1 0.8837 100 0.059 Contact Map
3bbnK 1 0.907 100 0.072 Contact Map
4tp8K 1 0.0155 100 0.096 Contact Map
3j7aP 1 0.8915 100 0.108 Contact Map
3zeyH 1 0.876 100 0.108 Contact Map
5aj3K 1 1 100 0.114 Contact Map
4ujpP 1 0.8915 100 0.12 Contact Map
4cvnE 1 0.8837 100 0.126 Contact Map
2zjrL 1 0.7209 96.9 0.853 Contact Map
4rb6S 1 0.7907 96.8 0.856 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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