GREMLIN Database
RL34 - 50S ribosomal protein L34
UniProt: P0A7P5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10892
Length: 46 (44)
Sequences: 208 (49)
Seq/√Len: 7.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_S14_R3.8850.96
10_L14_R3.6040.94
29_Q33_R2.0040.54
20_A23_A1.9130.50
5_F44_V1.9090.50
33_R36_A1.8220.47
9_V12_R1.6790.41
5_F12_R1.6710.41
36_A43_T1.5090.35
14_R24_T1.4190.32
30_V40_A1.3070.28
5_F9_V1.2640.27
23_A40_A1.2440.26
41_R44_V1.2400.26
23_A26_N1.1460.23
21_R28_R1.1370.23
5_F33_R1.1240.23
21_R37_K1.1000.22
25_K30_V1.0810.22
13_N16_H1.0590.21
36_A41_R1.0550.21
31_L43_T1.0530.21
25_K29_Q1.0430.21
30_V38_G1.0390.21
13_N25_K1.0260.20
11_K30_V1.0100.20
20_A40_A1.0080.20
25_K32_A1.0010.20
8_S11_K0.9520.18
26_N29_Q0.9390.18
20_A37_K0.9160.18
15_S43_T0.8760.17
32_A43_T0.8650.16
10_L15_S0.8610.16
32_A41_R0.7990.15
29_Q32_A0.7980.15
20_A43_T0.7530.14
32_A40_A0.7370.14
21_R30_V0.7090.13
26_N30_V0.6490.12
1_M26_N0.6460.12
24_T31_L0.6410.12
13_N33_R0.6290.12
23_A32_A0.6290.12
5_F26_N0.6280.12
9_V40_A0.6260.12
13_N43_T0.6200.12
15_S29_Q0.6050.12
8_S13_N0.5990.11
28_R37_K0.5920.11
11_K15_S0.5810.11
20_A38_G0.5720.11
2_K16_H0.5670.11
20_A41_R0.5540.11
12_R26_N0.5540.11
11_K43_T0.5470.11
8_S12_R0.5450.11
9_V25_K0.5440.11
19_R32_A0.5340.10
37_K41_R0.5260.10
33_R41_R0.5170.10
16_H41_R0.5140.10
15_S38_G0.5130.10
9_V13_N0.5070.10
13_N36_A0.5050.10
12_R29_Q0.5000.10
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4tp92 1 1 99.8 0.108 Contact Map
4rb67 1 1 99.8 0.112 Contact Map
3j3w2 1 0.9565 99.8 0.137 Contact Map
1vw4Y 1 0.9565 99.7 0.167 Contact Map
3j7y2 1 0.9348 99.7 0.174 Contact Map
3bbo4 1 0.8043 99.7 0.227 Contact Map
1ds1A 1 0.6522 3 0.909 Contact Map
2pg1I 2 0.1522 2.3 0.915 Contact Map
2jpjA 1 0.3478 2 0.917 Contact Map
3p9aA 4 0.5435 1.8 0.919 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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