NADK - ECOLI - GREMLIN Contacts

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NADK - NAD kinase

UniProt:	P0A7B3	Sequences: MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12192
Length:	292 (274)
Sequences:	4024 (2733)
Seq/√Len:	165.1

ECOLI - NADK
BACSU - NADK2 NADK1
HALSA - NADK
SULSO - NADK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
125_K	268_N	4.262	1.00
228_T	261_R	3.838	1.00
230_R	257_D	3.752	1.00
167_D	227_S	3.635	1.00
163_E	232_R	3.299	1.00
115_D	120_H	3.103	1.00
130_E	261_R	3.080	1.00
232_R	257_D	3.024	1.00
33_K	114_A	3.009	1.00
204_D	225_S	3.004	1.00
230_R	259_L	2.976	1.00
191_S	209_V	2.948	1.00
135_Q	256_E	2.902	1.00
13_H	16_H	2.790	1.00
162_F	231_L	2.726	1.00
130_E	142_I	2.713	1.00
76_M	269_L	2.540	1.00
199_L	207_T	2.521	1.00
125_K	266_H	2.503	1.00
132_Q	259_L	2.430	1.00
25_M	110_Q	2.425	1.00
168_E	230_R	2.321	1.00
126_R	185_T	2.269	1.00
108_N	111_Q	2.235	1.00
29_W	114_A	2.233	1.00
228_T	259_L	2.228	1.00
165_Y	170_F	2.212	1.00
114_A	118_E	2.185	1.00
208_L	223_I	2.121	1.00
131_A	149_V	2.037	1.00
165_Y	232_R	2.022	1.00
164_V	208_L	1.987	1.00
165_Y	230_R	1.917	1.00
132_Q	261_R	1.913	1.00
124_E	271_H	1.874	1.00
169_I	276_S	1.874	1.00
149_V	242_I	1.834	1.00
67_A	83_L	1.830	1.00
128_L	267_L	1.812	1.00
132_Q	142_I	1.775	1.00
123_S	268_N	1.765	1.00
168_E	228_T	1.750	1.00
166_I	229_I	1.746	1.00
163_E	234_S	1.730	1.00
19_A	23_H	1.729	1.00
144_T	263_C	1.716	1.00
70_V	95_R	1.699	1.00
12_G	23_H	1.661	1.00
160_I	240_L	1.648	1.00
81_R	247_Q	1.647	1.00
29_W	33_K	1.642	1.00
28_R	32_T	1.632	1.00
151_L	231_L	1.625	1.00
76_M	92_G	1.621	1.00
194_A	209_V	1.610	1.00
170_F	173_S	1.592	1.00
134_C	139_Q	1.578	1.00
26_L	70_V	1.571	1.00
194_A	212_F	1.558	1.00
130_E	263_C	1.475	1.00
197_P	222_V	1.451	1.00
76_M	102_T	1.418	1.00
166_I	227_S	1.397	1.00
29_W	110_Q	1.391	1.00
164_V	179_L	1.387	1.00
128_L	263_C	1.384	1.00
181_I	231_L	1.375	1.00
129_L	206_I	1.369	1.00
134_C	259_L	1.365	1.00
11_V	67_A	1.349	1.00
26_L	113_L	1.349	1.00
188_T	198_I	1.342	1.00
134_C	257_D	1.337	1.00
197_P	207_T	1.307	1.00
66_L	116_V	1.298	1.00
163_E	173_S	1.297	1.00
145_A	244_C	1.286	1.00
103_D	271_H	1.280	1.00
169_I	279_N	1.276	1.00
104_L	112_Q	1.268	1.00
87_D	265_Y	1.263	1.00
148_E	180_I	1.257	1.00
120_H	273_K	1.240	1.00
277_Y	281_L	1.238	1.00
149_V	260_I	1.237	1.00
204_D	266_H	1.231	1.00
199_L	205_A	1.231	1.00
80_A	90_V	1.217	1.00
87_D	268_N	1.215	1.00
24_E	28_R	1.208	1.00
100_F	278_F	1.202	1.00
91_I	270_I	1.195	1.00
38_I	64_A	1.184	1.00
94_N	284_K	1.172	1.00
149_V	244_C	1.167	1.00
182_S	207_T	1.166	1.00
11_V	79_A	1.158	1.00
131_A	244_C	1.152	1.00
21_T	25_M	1.151	1.00
80_A	267_L	1.149	1.00
200_T	278_F	1.147	1.00
98_L	214_H	1.146	1.00
40_E	43_I	1.146	1.00
180_I	194_A	1.136	1.00
130_E	264_D	1.124	1.00
216_L	219_R	1.119	1.00
91_I	116_V	1.114	1.00
128_L	266_H	1.110	1.00
181_I	260_I	1.103	1.00
20_L	23_H	1.100	1.00
199_L	222_V	1.098	1.00
27_Y	31_C	1.091	1.00
223_I	229_I	1.082	1.00
22_T	25_M	1.081	1.00
126_R	201_P	1.070	0.99
56_T	59_E	1.061	0.99
66_L	270_I	1.054	0.99
253_Q	256_E	1.037	0.99
127_F	262_R	1.035	0.99
192_L	216_L	1.035	0.99
44_A	47_L	1.035	0.99
233_F	240_L	1.026	0.99
239_D	253_Q	1.024	0.99
231_L	260_I	1.023	0.99
68_V	113_L	1.008	0.99
165_Y	168_E	1.006	0.99
29_W	113_L	1.003	0.99
21_T	24_E	0.995	0.99
279_N	283_T	0.993	0.99
56_T	60_I	0.983	0.99
85_R	265_Y	0.979	0.99
162_F	176_S	0.979	0.99
111_Q	115_D	0.976	0.99
33_K	118_E	0.962	0.99
200_T	224_N	0.960	0.99
177_D	190_Y	0.958	0.99
239_D	251_P	0.956	0.99
167_D	228_T	0.950	0.99
17_P	20_L	0.944	0.99
166_I	223_I	0.937	0.99
94_N	99_G	0.936	0.99
185_T	201_P	0.934	0.99
135_Q	138_C	0.931	0.99
91_I	104_L	0.927	0.99
202_S	224_N	0.927	0.99
10_I	27_Y	0.926	0.98
204_D	262_R	0.924	0.98
132_Q	139_Q	0.921	0.98
207_T	222_V	0.921	0.98
115_D	272_P	0.919	0.98
206_I	229_I	0.917	0.98
171_A	278_F	0.917	0.98
181_I	206_I	0.915	0.98
223_I	227_S	0.911	0.98
225_S	262_R	0.905	0.98
43_I	46_E	0.901	0.98
20_L	24_E	0.898	0.98
166_I	171_A	0.897	0.98
179_L	208_L	0.895	0.98
127_F	205_A	0.893	0.98
150_V	180_I	0.891	0.98
192_L	214_H	0.889	0.98
26_L	68_V	0.885	0.98
122_I	274_D	0.885	0.98
135_Q	140_K	0.884	0.98
153_P	158_H	0.882	0.98
27_Y	39_V	0.879	0.98
134_C	256_E	0.872	0.98
144_T	265_Y	0.871	0.98
93_I	109_A	0.871	0.98
28_R	31_C	0.867	0.98
136_Q	139_Q	0.864	0.98
143_S	244_C	0.861	0.98
127_F	225_S	0.861	0.98
41_Q	45_H	0.860	0.98
127_F	184_P	0.860	0.98
181_I	208_L	0.859	0.98
116_V	121_Y	0.858	0.98
27_Y	37_V	0.857	0.98
80_A	146_I	0.856	0.97
131_A	258_V	0.856	0.97
127_F	204_D	0.850	0.97
32_T	110_Q	0.849	0.97
62_Q	86_Y	0.845	0.97
76_M	90_V	0.840	0.97
59_E	62_Q	0.840	0.97
84_A	263_C	0.836	0.97
69_V	79_A	0.835	0.97
153_P	157_A	0.834	0.97
128_L	146_I	0.829	0.97
200_T	277_Y	0.829	0.97
116_V	119_G	0.820	0.97
74_G	96_G	0.812	0.97
103_D	275_Y	0.810	0.97
35_Y	117_L	0.810	0.97
146_I	185_T	0.807	0.96
135_Q	253_Q	0.804	0.96
200_T	227_S	0.803	0.96
139_Q	142_I	0.799	0.96
262_R	266_H	0.795	0.96
60_I	64_A	0.791	0.96
241_E	251_P	0.790	0.96
140_K	143_S	0.789	0.96
146_I	267_L	0.788	0.96
121_Y	270_I	0.785	0.96
161_E	175_R	0.782	0.96
154_G	239_D	0.781	0.96
158_H	247_Q	0.779	0.96
30_L	37_V	0.778	0.96
93_I	104_L	0.776	0.96
204_D	226_S	0.776	0.96
171_A	223_I	0.775	0.96
131_A	242_I	0.772	0.95
44_A	48_Q	0.769	0.95
130_E	144_T	0.769	0.95
83_L	88_I	0.768	0.95
224_N	227_S	0.766	0.95
112_Q	272_P	0.766	0.95
61_G	64_A	0.762	0.95
41_Q	56_T	0.754	0.95
23_H	27_Y	0.753	0.95
148_E	152_H	0.752	0.95
164_V	231_L	0.748	0.95
21_T	32_T	0.744	0.94
276_S	280_T	0.738	0.94
36_E	53_K	0.735	0.94
215_T	246_S	0.733	0.94
67_A	90_V	0.731	0.94
10_I	26_L	0.728	0.94
277_Y	280_T	0.724	0.94
25_M	28_R	0.722	0.93
181_I	229_I	0.721	0.93
18_T	151_L	0.720	0.93
13_H	200_T	0.719	0.93
127_F	206_I	0.717	0.93
122_I	271_H	0.715	0.93
14_P	46_E	0.713	0.93
192_L	285_L	0.713	0.93
10_I	30_L	0.712	0.93
31_C	35_Y	0.712	0.93
217_S	285_L	0.707	0.93
161_E	173_S	0.705	0.93
66_L	91_I	0.702	0.93
61_G	83_L	0.700	0.92
31_C	36_E	0.694	0.92
26_L	109_A	0.694	0.92
12_G	43_I	0.692	0.92
118_E	139_Q	0.691	0.92
19_A	22_T	0.690	0.92
22_T	106_P	0.690	0.92
111_Q	114_A	0.688	0.92
116_V	272_P	0.687	0.92
106_P	179_L	0.686	0.92
64_A	88_I	0.685	0.92
69_V	76_M	0.685	0.92
90_V	267_L	0.683	0.91
103_D	189_A	0.680	0.91
209_V	220_P	0.679	0.91
84_A	128_L	0.678	0.91
241_E	249_A	0.678	0.91
163_E	170_F	0.678	0.91
24_E	31_C	0.678	0.91
126_R	277_Y	0.677	0.91
44_A	49_L	0.677	0.91
192_L	197_P	0.677	0.91
194_A	211_M	0.675	0.91
45_H	49_L	0.669	0.91
108_N	112_Q	0.669	0.91
133_V	252_I	0.668	0.91
12_G	40_E	0.667	0.90
54_T	58_A	0.664	0.90
278_F	281_L	0.662	0.90
157_A	243_S	0.661	0.90
205_A	222_V	0.660	0.90
205_A	220_P	0.659	0.90
124_E	202_S	0.657	0.90
97_N	175_R	0.656	0.90
61_G	86_Y	0.656	0.90
148_E	266_H	0.653	0.90
33_K	117_L	0.649	0.89
39_V	43_I	0.645	0.89
24_E	32_T	0.643	0.89
148_E	247_Q	0.643	0.89
31_C	34_G	0.640	0.89
33_K	110_Q	0.640	0.89
133_V	242_I	0.640	0.89
201_P	277_Y	0.637	0.88
164_V	174_Q	0.634	0.88
23_H	42_Q	0.634	0.88
191_S	207_T	0.633	0.88
103_D	124_E	0.632	0.88
99_G	102_T	0.631	0.88
226_S	262_R	0.630	0.88
129_L	145_A	0.627	0.88
128_L	144_T	0.627	0.88
177_D	212_F	0.625	0.87
133_V	256_E	0.622	0.87
22_T	42_Q	0.619	0.87
30_L	35_Y	0.617	0.87
41_Q	44_A	0.616	0.87
67_A	91_I	0.615	0.87
29_W	109_A	0.614	0.87
103_D	272_P	0.614	0.87
90_V	198_I	0.613	0.86
173_S	234_S	0.613	0.86
103_D	280_T	0.611	0.86
22_T	26_L	0.611	0.86
68_V	91_I	0.610	0.86
89_K	210_P	0.608	0.86
151_L	240_L	0.608	0.86
171_A	174_Q	0.608	0.86
21_T	28_R	0.608	0.86
14_P	36_E	0.607	0.86
31_C	38_I	0.603	0.86
243_S	249_A	0.603	0.86
133_V	258_V	0.603	0.86
129_L	185_T	0.600	0.85
30_L	34_G	0.599	0.85
137_D	257_D	0.595	0.85
174_Q	210_P	0.594	0.85
67_A	88_I	0.589	0.84
158_H	243_S	0.582	0.83
17_P	21_T	0.581	0.83
150_V	246_S	0.580	0.83
276_S	279_N	0.580	0.83
84_A	265_Y	0.579	0.83
42_Q	45_H	0.578	0.83
205_A	233_F	0.577	0.83
45_H	48_Q	0.575	0.83
78_G	81_R	0.574	0.83
42_Q	48_Q	0.574	0.83
105_D	277_Y	0.574	0.83
150_V	176_S	0.573	0.83
15_R	23_H	0.572	0.82
109_A	206_I	0.570	0.82
18_T	31_C	0.569	0.82
77_L	191_S	0.567	0.82
64_A	83_L	0.566	0.82
31_C	41_Q	0.565	0.82
182_S	263_C	0.561	0.81
202_S	226_S	0.560	0.81
17_P	45_H	0.559	0.81
28_R	33_K	0.559	0.81
81_R	84_A	0.558	0.81
17_P	35_Y	0.557	0.81
150_V	243_S	0.557	0.81
167_D	226_S	0.557	0.81
174_Q	198_I	0.556	0.81
97_N	277_Y	0.556	0.81
59_E	63_L	0.553	0.80
158_H	246_S	0.552	0.80
157_A	212_F	0.549	0.80
75_N	126_R	0.548	0.80
190_Y	211_M	0.548	0.80
148_E	193_S	0.546	0.79
111_Q	118_E	0.545	0.79
270_I	280_T	0.544	0.79
169_I	282_S	0.543	0.79
242_I	252_I	0.542	0.79
87_D	128_L	0.542	0.79
263_C	266_H	0.542	0.79
148_E	243_S	0.542	0.79
30_L	109_A	0.541	0.79
10_I	233_F	0.541	0.79
25_M	41_Q	0.540	0.79
95_R	98_L	0.540	0.79
97_N	148_E	0.539	0.79
31_C	37_V	0.538	0.78
106_P	211_M	0.538	0.78
14_P	43_I	0.538	0.78
110_Q	114_A	0.538	0.78
28_R	47_L	0.537	0.78
10_I	32_T	0.537	0.78
152_H	241_E	0.536	0.78
115_D	261_R	0.534	0.78
105_D	272_P	0.532	0.78
31_C	49_L	0.531	0.78
134_C	182_S	0.530	0.77
22_T	70_V	0.528	0.77
235_H	239_D	0.527	0.77
275_Y	280_T	0.526	0.77
26_L	29_W	0.522	0.76
41_Q	48_Q	0.521	0.76
58_A	86_Y	0.521	0.76
162_F	233_F	0.520	0.76
25_M	29_W	0.519	0.76
170_F	282_S	0.518	0.76
10_I	37_V	0.518	0.76
150_V	181_I	0.517	0.76
25_M	32_T	0.517	0.76
215_T	260_I	0.515	0.75
197_P	284_K	0.514	0.75
159_M	194_A	0.514	0.75
80_A	215_T	0.514	0.75
14_P	21_T	0.513	0.75
28_R	49_L	0.513	0.75
15_R	45_H	0.512	0.75
151_L	274_D	0.512	0.75
206_I	227_S	0.511	0.75
36_E	39_V	0.510	0.75
134_C	140_K	0.510	0.75
136_Q	256_E	0.510	0.75
125_K	204_D	0.509	0.75
84_A	144_T	0.506	0.74
101_L	246_S	0.505	0.74
95_R	207_T	0.504	0.74
150_V	157_A	0.504	0.74
150_V	194_A	0.502	0.74
67_A	79_A	0.502	0.74
153_P	243_S	0.501	0.73
36_E	44_A	0.500	0.73

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pfnA	4	0.9829	100	0.131	Contact Map
3afoA	4	1	100	0.164	Contact Map
2an1A	4	0.9658	100	0.282	Contact Map
1u0tA	4	0.9281	100	0.318	Contact Map
1yt5A	4	0.8664	100	0.364	Contact Map
1z0sA	4	0.8493	100	0.378	Contact Map
2i2cA	3	0.8767	100	0.378	Contact Map
2qv7A	2	0.9007	100	0.644	Contact Map
3s40A	3	0.8562	100	0.657	Contact Map
4werA	2	0.8459	100	0.69	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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