MNTH - ECOLI - GREMLIN Contacts

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MNTH - Divalent metal cation transporter MntH

UniProt:	P0A769	Sequences: MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG14157
Length:	412 (390)
Sequences:	4040 (2608)
Seq/√Len:	132.0

ECOLI - MNTH
BACSU - MNTH YCSG
SULSO - Q97UL0 Q7LYJ9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
79_K	87_D	9.582	1.00
178_N	181_Q	5.470	1.00
372_S	387_K	4.483	1.00
384_K	388_Q	3.672	1.00
88_H	373_D	3.535	1.00
371_T	382_N	3.489	1.00
277_L	280_Q	3.413	1.00
384_K	387_K	3.357	1.00
365_V	398_V	3.304	1.00
374_S	381_V	3.179	1.00
368_L	390_G	3.178	1.00
328_R	331_T	2.908	1.00
382_N	387_K	2.895	1.00
65_L	393_I	2.840	1.00
95_W	99_V	2.829	1.00
365_V	394_V	2.741	1.00
280_Q	285_H	2.663	1.00
76_A	380_L	2.656	1.00
68_I	72_K	2.580	1.00
186_M	251_L	2.568	1.00
383_S	386_V	2.460	1.00
365_V	369_I	2.449	1.00
43_Q	47_S	2.444	1.00
402_I	406_V	2.424	1.00
182_L	255_A	2.413	1.00
73_L	371_T	2.351	1.00
89_Y	369_I	2.340	1.00
323_P	326_V	2.335	1.00
218_S	312_V	2.327	1.00
53_L	251_L	2.307	1.00
119_G	296_V	2.285	1.00
62_M	393_I	2.226	1.00
179_L	182_L	2.226	1.00
251_L	255_A	2.211	1.00
40_T	202_G	2.184	1.00
280_Q	288_A	2.119	1.00
64_M	240_A	2.081	1.00
274_E	277_L	2.059	1.00
192_P	196_A	2.038	1.00
92_P	96_F	2.018	1.00
369_I	373_D	1.962	1.00
120_F	124_L	1.951	1.00
65_L	386_V	1.910	1.00
68_I	236_K	1.896	1.00
127_S	130_Q	1.877	1.00
69_L	382_N	1.864	1.00
162_L	166_A	1.859	1.00
372_S	382_N	1.854	1.00
80_N	83_E	1.851	1.00
135_T	296_V	1.850	1.00
403_W	407_G	1.824	1.00
90_P	93_V	1.823	1.00
151_K	155_K	1.794	1.00
233_S	237_W	1.787	1.00
73_L	84_Q	1.717	1.00
364_L	394_V	1.717	1.00
395_V	399_A	1.710	1.00
79_K	84_Q	1.694	1.00
171_E	256_T	1.681	1.00
388_Q	391_W	1.680	1.00
198_F	351_M	1.621	1.00
18_R	237_W	1.605	1.00
66_I	364_L	1.601	1.00
138_A	141_L	1.592	1.00
76_A	232_Y	1.585	1.00
244_T	248_F	1.585	1.00
48_F	196_A	1.579	1.00
181_Q	185_G	1.569	1.00
91_R	95_W	1.553	1.00
72_K	382_N	1.550	1.00
116_A	135_T	1.535	1.00
333_L	336_F	1.519	1.00
26_F	242_A	1.519	1.00
373_D	376_L	1.510	1.00
69_L	390_G	1.502	1.00
368_L	394_V	1.488	1.00
54_W	189_P	1.478	1.00
391_W	395_V	1.476	1.00
237_W	241_I	1.471	1.00
372_S	391_W	1.467	1.00
335_S	339_I	1.463	1.00
50_Y	259_A	1.452	1.00
154_E	223_L	1.446	1.00
99_V	103_I	1.442	1.00
57_V	247_G	1.428	1.00
271_D	274_E	1.416	1.00
48_F	195_E	1.413	1.00
178_N	182_L	1.392	1.00
117_A	128_L	1.390	1.00
86_R	94_V	1.387	1.00
198_F	354_V	1.384	1.00
71_A	235_T	1.374	1.00
126_V	130_Q	1.369	1.00
179_L	183_G	1.366	1.00
270_A	274_E	1.360	1.00
32_Y	246_A	1.348	1.00
180_A	183_G	1.346	1.00
169_I	252_A	1.345	1.00
289_T	293_L	1.344	1.00
370_F	376_L	1.343	1.00
56_V	254_M	1.324	1.00
381_V	384_K	1.314	1.00
138_A	300_L	1.313	1.00
163_F	293_L	1.310	1.00
120_F	296_V	1.306	1.00
343_L	348_I	1.306	1.00
184_K	190_S	1.299	1.00
332_M	335_S	1.294	1.00
184_K	188_I	1.293	1.00
183_G	187_V	1.287	1.00
177_P	182_L	1.285	1.00
39_A	275_A	1.283	1.00
163_F	297_A	1.280	1.00
31_G	305_V	1.279	1.00
369_I	391_W	1.275	1.00
82_A	313_V	1.274	1.00
41_N	250_N	1.270	1.00
105_A	313_V	1.254	1.00
322_I	326_V	1.254	1.00
100_Q	359_G	1.253	1.00
332_M	339_I	1.250	1.00
385_R	388_Q	1.247	1.00
344_D	347_R	1.246	1.00
59_A	207_T	1.242	1.00
368_L	372_S	1.239	1.00
286_A	290_V	1.236	1.00
29_A	33_I	1.233	1.00
175_S	283_L	1.231	1.00
85_I	97_Y	1.209	1.00
107_A	352_S	1.206	1.00
333_L	339_I	1.198	0.99
173_I	177_P	1.195	0.99
44_A	203_V	1.192	0.99
191_L	196_A	1.184	0.99
104_I	359_G	1.180	0.99
307_T	311_Q	1.177	0.99
382_N	386_V	1.165	0.99
112_E	115_G	1.165	0.99
394_V	398_V	1.163	0.99
269_V	274_E	1.160	0.99
277_L	281_P	1.149	0.99
172_L	252_A	1.143	0.99
374_S	379_D	1.139	0.99
336_F	339_I	1.136	0.99
75_I	235_T	1.135	0.99
48_F	193_T	1.131	0.99
172_L	255_A	1.130	0.99
155_K	158_G	1.128	0.99
368_L	391_W	1.127	0.99
62_M	204_L	1.125	0.99
137_I	141_L	1.114	0.99
364_L	393_I	1.114	0.99
321_H	325_W	1.106	0.99
35_P	299_G	1.104	0.99
160_L	297_A	1.104	0.99
368_L	387_K	1.101	0.99
175_S	259_A	1.101	0.99
181_Q	184_K	1.099	0.99
168_Y	249_V	1.097	0.99
61_L	65_L	1.090	0.99
192_P	195_E	1.080	0.99
190_S	193_T	1.073	0.99
382_N	385_R	1.071	0.99
206_A	209_M	1.068	0.99
65_L	389_T	1.066	0.99
358_F	401_N	1.065	0.99
161_L	301_S	1.062	0.99
398_V	402_I	1.061	0.99
51_Q	190_S	1.061	0.99
17_M	20_A	1.060	0.99
332_M	336_F	1.056	0.99
210_P	356_L	1.056	0.99
392_V	395_V	1.054	0.99
67_Q	82_A	1.046	0.99
100_Q	105_A	1.044	0.99
136_G	336_F	1.037	0.98
276_Y	288_A	1.028	0.98
220_T	223_L	1.024	0.98
44_A	199_L	1.024	0.98
173_I	176_Q	1.022	0.98
27_I	305_V	1.021	0.98
60_N	247_G	1.017	0.98
25_A	29_A	1.015	0.98
348_I	352_S	1.014	0.98
361_A	398_V	1.011	0.98
49_G	262_H	1.011	0.98
108_T	112_E	1.009	0.98
69_L	371_T	1.007	0.98
399_A	403_W	1.006	0.98
351_M	355_L	1.006	0.98
285_H	288_A	1.004	0.98
67_Q	208_I	1.004	0.98
321_H	324_L	1.003	0.98
191_L	200_A	1.003	0.98
132_A	135_T	0.998	0.98
133_V	137_I	0.995	0.98
89_Y	370_F	0.988	0.98
324_L	327_R	0.979	0.98
167_A	290_V	0.979	0.98
80_N	221_Q	0.976	0.98
42_I	275_A	0.974	0.98
378_G	381_V	0.973	0.98
212_V	305_V	0.972	0.98
65_L	390_G	0.969	0.98
379_D	383_S	0.966	0.98
37_N	41_N	0.952	0.97
101_A	105_A	0.952	0.97
240_A	244_T	0.951	0.97
126_V	134_L	0.951	0.97
170_V	174_F	0.945	0.97
184_K	187_V	0.940	0.97
171_E	174_F	0.937	0.97
334_P	337_I	0.935	0.97
388_Q	395_V	0.934	0.97
70_S	74_G	0.928	0.97
323_P	327_R	0.926	0.97
15_R	19_L	0.922	0.97
381_V	387_K	0.921	0.97
77_T	376_L	0.918	0.97
77_T	84_Q	0.917	0.97
396_L	399_A	0.915	0.97
335_S	338_V	0.908	0.96
111_A	352_S	0.903	0.96
388_Q	392_V	0.899	0.96
79_K	83_E	0.897	0.96
121_K	273_D	0.897	0.96
337_I	340_L	0.896	0.96
54_W	192_P	0.894	0.96
130_Q	183_G	0.891	0.96
38_F	294_S	0.890	0.96
232_Y	236_K	0.887	0.96
112_E	206_A	0.886	0.96
100_Q	104_I	0.886	0.96
152_P	155_K	0.886	0.96
47_S	195_E	0.885	0.96
47_S	191_L	0.884	0.96
257_A	260_A	0.884	0.96
180_A	184_K	0.881	0.96
321_H	326_V	0.880	0.96
34_D	37_N	0.878	0.96
69_L	73_L	0.877	0.96
133_V	336_F	0.874	0.96
41_N	253_M	0.872	0.96
212_V	216_H	0.871	0.96
73_L	370_F	0.869	0.96
111_A	349_L	0.864	0.95
229_Q	379_D	0.859	0.95
141_L	145_L	0.856	0.95
124_L	289_T	0.856	0.95
339_I	345_P	0.855	0.95
216_H	220_T	0.854	0.95
120_F	131_G	0.852	0.95
84_Q	370_F	0.850	0.95
130_Q	133_V	0.847	0.95
169_I	173_I	0.847	0.95
386_V	390_G	0.847	0.95
178_N	395_V	0.841	0.95
271_D	346_T	0.840	0.95
260_A	263_F	0.840	0.95
81_L	214_Y	0.839	0.95
51_Q	192_P	0.838	0.95
199_L	350_V	0.835	0.94
32_Y	211_H	0.833	0.94
185_G	193_T	0.831	0.94
98_W	105_A	0.831	0.94
135_T	143_L	0.829	0.94
334_P	338_V	0.829	0.94
68_I	232_Y	0.826	0.94
41_N	108_T	0.824	0.94
36_G	353_Q	0.824	0.94
23_G	238_D	0.823	0.94
183_G	186_M	0.817	0.94
171_E	175_S	0.814	0.94
129_L	133_V	0.813	0.94
105_A	310_G	0.813	0.94
169_I	248_F	0.810	0.93
71_A	216_H	0.806	0.93
150_Q	222_H	0.804	0.93
371_T	377_M	0.796	0.93
149_G	152_P	0.794	0.93
379_D	384_K	0.792	0.93
170_V	290_V	0.792	0.93
207_T	353_Q	0.792	0.93
204_L	361_A	0.791	0.93
44_A	56_V	0.791	0.93
82_A	214_Y	0.789	0.93
132_A	139_T	0.783	0.92
33_I	249_V	0.782	0.92
99_V	333_L	0.781	0.92
56_V	203_V	0.780	0.92
137_I	180_A	0.780	0.92
30_I	34_D	0.774	0.92
356_L	360_I	0.770	0.92
33_I	301_S	0.768	0.92
283_L	290_V	0.765	0.91
388_Q	399_A	0.765	0.91
108_T	111_A	0.765	0.91
383_S	387_K	0.764	0.91
289_T	292_G	0.764	0.91
211_H	217_S	0.762	0.91
229_Q	380_L	0.762	0.91
27_I	30_I	0.761	0.91
285_H	379_D	0.761	0.91
51_Q	194_S	0.761	0.91
113_F	136_G	0.758	0.91
291_F	350_V	0.758	0.91
35_P	349_L	0.758	0.91
134_L	138_A	0.756	0.91
39_A	349_L	0.752	0.91
167_A	283_L	0.752	0.91
284_S	287_A	0.750	0.91
347_R	351_M	0.748	0.90
209_M	213_I	0.747	0.90
66_I	393_I	0.745	0.90
27_I	31_G	0.745	0.90
168_Y	279_L	0.744	0.90
50_Y	185_G	0.742	0.90
28_A	239_V	0.740	0.90
56_V	256_T	0.739	0.90
133_V	136_G	0.738	0.90
329_T	333_L	0.738	0.90
123_I	289_T	0.737	0.90
253_M	294_S	0.735	0.90
168_Y	253_M	0.735	0.90
67_Q	210_P	0.735	0.90
135_T	139_T	0.735	0.90
131_G	134_L	0.733	0.90
113_F	131_G	0.732	0.90
281_P	287_A	0.731	0.89
357_S	401_N	0.729	0.89
170_V	173_I	0.729	0.89
90_P	373_D	0.727	0.89
42_I	272_L	0.726	0.89
47_S	166_A	0.722	0.89
24_P	238_D	0.721	0.89
30_I	161_L	0.721	0.89
197_V	403_W	0.721	0.89
31_G	38_F	0.713	0.88
231_R	234_A	0.711	0.88
134_L	137_I	0.710	0.88
209_M	356_L	0.710	0.88
130_Q	137_I	0.709	0.88
137_I	140_F	0.709	0.88
278_T	294_S	0.708	0.88
166_A	170_V	0.708	0.88
29_A	75_I	0.708	0.88
40_T	353_Q	0.706	0.88
209_M	216_H	0.705	0.88
32_Y	63_A	0.705	0.88
108_T	356_L	0.705	0.88
402_I	405_L	0.699	0.87
32_Y	37_N	0.699	0.87
109_D	112_E	0.698	0.87
121_K	128_L	0.696	0.87
96_F	100_Q	0.694	0.87
140_F	144_M	0.694	0.87
285_H	289_T	0.693	0.87
337_I	341_M	0.693	0.87
183_G	355_L	0.691	0.87
166_A	277_L	0.690	0.87
212_V	215_L	0.689	0.86
334_P	339_I	0.688	0.86
112_E	302_S	0.688	0.86
159_G	170_V	0.686	0.86
37_N	206_A	0.684	0.86
247_G	251_L	0.684	0.86
359_G	363_A	0.681	0.86
213_I	364_L	0.680	0.86
120_F	126_V	0.680	0.86
67_Q	207_T	0.679	0.86
396_L	400_L	0.678	0.86
28_A	213_I	0.677	0.86
50_Y	178_N	0.677	0.86
84_Q	376_L	0.676	0.85
308_L	312_V	0.675	0.85
185_G	188_I	0.674	0.85
333_L	337_I	0.674	0.85
328_R	334_P	0.674	0.85
35_P	216_H	0.673	0.85
263_F	266_H	0.672	0.85
159_G	289_T	0.669	0.85
37_N	209_M	0.669	0.85
43_Q	346_T	0.666	0.85
31_G	363_A	0.664	0.84
265_G	268_G	0.657	0.84
31_G	210_P	0.655	0.84
76_A	221_Q	0.655	0.84
115_G	177_P	0.654	0.84
252_A	283_L	0.654	0.84
73_L	367_L	0.653	0.83
57_V	186_M	0.653	0.83
25_A	119_G	0.652	0.83
63_A	207_T	0.651	0.83
159_G	395_V	0.651	0.83
196_A	200_A	0.647	0.83
27_I	212_V	0.646	0.83
18_R	22_M	0.646	0.83
399_A	402_I	0.645	0.83
22_M	26_F	0.645	0.83
311_Q	315_Q	0.644	0.83
203_V	254_M	0.642	0.82
63_A	246_A	0.642	0.82
71_A	75_I	0.641	0.82
332_M	338_V	0.641	0.82
74_G	217_S	0.641	0.82
208_I	295_L	0.640	0.82
84_Q	87_D	0.638	0.82
33_I	164_V	0.637	0.82
209_M	353_Q	0.637	0.82
238_D	242_A	0.637	0.82
137_I	325_W	0.635	0.82
161_L	165_A	0.634	0.82
122_L	292_G	0.633	0.82
205_G	309_A	0.633	0.82
159_G	337_I	0.632	0.81
34_D	112_E	0.630	0.81
177_P	255_A	0.630	0.81
162_L	251_L	0.626	0.81
211_H	357_S	0.626	0.81
178_N	183_G	0.625	0.81
245_I	249_V	0.625	0.81
373_D	387_K	0.625	0.81
67_Q	214_Y	0.624	0.81
33_I	41_N	0.621	0.80
120_F	135_T	0.620	0.80
126_V	131_G	0.620	0.80
60_N	64_M	0.620	0.80
82_A	316_G	0.619	0.80
97_Y	366_P	0.619	0.80
342_G	345_P	0.618	0.80
34_D	41_N	0.616	0.80
58_W	396_L	0.614	0.80
33_I	168_Y	0.613	0.79
69_L	72_K	0.613	0.79
74_G	81_L	0.610	0.79
80_N	316_G	0.610	0.79
275_A	291_F	0.609	0.79
131_G	135_T	0.608	0.79
206_A	353_Q	0.607	0.79
294_S	298_A	0.605	0.79
89_Y	93_V	0.605	0.79
86_R	319_R	0.605	0.79
83_E	221_Q	0.601	0.78
387_K	391_W	0.600	0.78
385_R	389_T	0.598	0.78
87_D	319_R	0.598	0.78
132_A	339_I	0.598	0.78
384_K	406_V	0.597	0.78
124_L	134_L	0.596	0.78
217_S	220_T	0.596	0.78
50_Y	258_A	0.594	0.77
127_S	328_R	0.593	0.77
37_N	250_N	0.593	0.77
34_D	108_T	0.592	0.77
175_S	398_V	0.590	0.77
116_A	119_G	0.588	0.77
210_P	218_S	0.588	0.77
299_G	302_S	0.587	0.76
139_T	303_T	0.586	0.76
263_F	358_F	0.585	0.76
70_S	81_L	0.584	0.76
172_L	179_L	0.584	0.76
101_A	104_I	0.584	0.76
227_S	231_R	0.582	0.76
83_E	316_G	0.580	0.76
241_I	337_I	0.579	0.75
201_A	398_V	0.579	0.75
71_A	78_G	0.578	0.75
164_V	249_V	0.578	0.75
156_V	162_L	0.577	0.75
63_A	243_M	0.576	0.75
126_V	317_F	0.576	0.75
103_I	151_K	0.576	0.75
159_G	163_F	0.575	0.75
256_T	278_T	0.575	0.75
70_S	217_S	0.574	0.75
363_A	366_P	0.574	0.75
87_D	374_S	0.573	0.75
183_G	229_Q	0.573	0.75
265_G	269_V	0.572	0.75
250_N	401_N	0.570	0.74
93_V	366_P	0.570	0.74
172_L	256_T	0.570	0.74
266_H	274_E	0.567	0.74
260_A	281_P	0.566	0.74
391_W	394_V	0.566	0.74
17_M	230_Q	0.566	0.74
27_I	231_R	0.565	0.74
74_G	80_N	0.563	0.73
249_V	253_M	0.563	0.73
206_A	210_P	0.563	0.73
260_A	287_A	0.561	0.73
47_S	51_Q	0.561	0.73
253_M	279_L	0.560	0.73
25_A	53_L	0.559	0.73
88_H	375_K	0.559	0.73
28_A	212_V	0.557	0.73
112_E	211_H	0.556	0.73
343_L	374_S	0.554	0.72
61_L	64_M	0.552	0.72
157_I	304_V	0.552	0.72
16_K	103_I	0.552	0.72
182_L	258_A	0.551	0.72
223_L	238_D	0.551	0.72
295_L	299_G	0.551	0.72
132_A	136_G	0.550	0.72
209_M	217_S	0.549	0.72
92_P	95_W	0.545	0.71
203_V	207_T	0.544	0.71
340_L	345_P	0.543	0.71
157_I	301_S	0.543	0.71
293_L	399_A	0.543	0.71
108_T	352_S	0.540	0.70
85_I	317_F	0.540	0.70
197_V	201_A	0.540	0.70
184_K	374_S	0.534	0.70
209_M	246_A	0.533	0.69
59_A	360_I	0.532	0.69
260_A	264_S	0.532	0.69
67_Q	74_G	0.532	0.69
322_I	325_W	0.531	0.69
156_V	304_V	0.531	0.69
60_N	244_T	0.531	0.69
119_G	292_G	0.531	0.69
64_M	244_T	0.530	0.69
35_P	115_G	0.530	0.69
224_H	228_R	0.528	0.69
28_A	31_G	0.528	0.69
403_W	406_V	0.527	0.69
90_P	369_I	0.527	0.69
108_T	353_Q	0.527	0.69
232_Y	380_L	0.526	0.68
101_A	359_G	0.525	0.68
273_D	277_L	0.525	0.68
269_V	281_P	0.525	0.68
38_F	305_V	0.524	0.68
304_V	308_L	0.523	0.68
112_E	210_P	0.522	0.68
106_M	220_T	0.522	0.68
266_H	269_V	0.521	0.68
97_Y	363_A	0.521	0.68
122_L	288_A	0.520	0.67
209_M	250_N	0.520	0.67
352_S	356_L	0.519	0.67
168_Y	275_A	0.519	0.67
324_L	329_T	0.518	0.67
31_G	211_H	0.518	0.67
55_V	200_A	0.517	0.67
103_I	355_L	0.517	0.67
134_L	145_L	0.517	0.67
313_V	316_G	0.517	0.67
166_A	241_I	0.515	0.67
238_D	363_A	0.515	0.67
50_Y	154_E	0.515	0.67
98_W	327_R	0.515	0.67
123_I	296_V	0.514	0.67
102_E	334_P	0.514	0.67
121_K	369_I	0.514	0.67
62_M	261_F	0.514	0.67
31_G	212_V	0.514	0.67
236_K	399_A	0.513	0.66
44_A	294_S	0.513	0.66
34_D	301_S	0.513	0.66
368_L	382_N	0.512	0.66
171_E	279_L	0.512	0.66
34_D	302_S	0.511	0.66
104_I	349_L	0.511	0.66
39_A	43_Q	0.510	0.66
43_Q	275_A	0.508	0.66
32_Y	216_H	0.508	0.66
72_K	298_A	0.508	0.66
322_I	327_R	0.507	0.66
148_R	152_P	0.506	0.65
372_S	375_K	0.505	0.65
115_G	299_G	0.504	0.65
191_L	329_T	0.504	0.65
129_L	340_L	0.504	0.65
152_P	194_S	0.503	0.65
297_A	301_S	0.503	0.65
153_L	304_V	0.503	0.65
326_V	330_V	0.502	0.65
95_W	137_I	0.502	0.65
98_W	306_G	0.501	0.65
214_Y	219_L	0.500	0.64
191_L	289_T	0.500	0.64

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4wgvA	2	0.9053	100	0.193	Contact Map
3dh4A	3	0.9053	99.3	0.845	Contact Map
3l1lA	2	0.8956	99	0.867	Contact Map
2xq2A	2	0.915	98.9	0.87	Contact Map
2jlnA	1	0.9417	98.8	0.875	Contact Map
3giaA	1	0.9102	98.7	0.878	Contact Map
4djkA	2	0.8859	98.4	0.89	Contact Map
4us3A	1	0.9053	98.1	0.898	Contact Map
2a65A	2	0.9296	97.7	0.908	Contact Map
4xp4A	1	0.9296	96.8	0.92	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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