GREMLIN Database
RSXA - Electron transport complex subunit RsxA
UniProt: P0A766 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13933
Length: 193 (181)
Sequences: 2670 (1292)
Seq/√Len: 96.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
27_P144_F4.7041.00
42_G145_S4.5681.00
54_I134_A3.6631.00
92_V96_S3.4731.00
50_T138_F3.3791.00
54_I130_F3.1881.00
129_N132_Q2.9571.00
8_F139_S2.9451.00
10_G15_N2.6711.00
19_L147_V2.6581.00
89_E100_Y2.5601.00
51_L84_V2.3321.00
52_A84_V2.3271.00
35_L149_V2.3201.00
50_T134_A2.3101.00
153_A163_V2.2291.00
165_A168_R2.1801.00
60_D73_R2.1751.00
50_T137_G2.1601.00
166_P170_N2.1201.00
9_V14_V1.9631.00
35_L152_A1.9371.00
46_T145_S1.9331.00
4_Y135_L1.9311.00
17_F140_A1.8621.00
53_S137_G1.8451.00
184_F188_S1.8311.00
40_G99_L1.7811.00
93_R100_Y1.7631.00
58_L130_F1.7311.00
176_T180_M1.6521.00
91_V95_T1.6001.00
97_P101_R1.5911.00
10_G14_V1.5801.00
54_I58_L1.5751.00
153_A157_R1.5531.00
133_S137_G1.5421.00
59_I80_V1.5171.00
185_M188_S1.5041.00
145_S149_V1.4721.00
123_N136_Y1.4721.00
15_N21_K1.4301.00
52_A120_A1.4271.00
182_L187_F1.4040.99
7_L132_Q1.3940.99
157_R163_V1.3740.99
5_L9_V1.3670.99
178_G181_S1.3580.99
44_A92_V1.3460.99
59_I63_I1.3200.99
12_V146_L1.3180.99
135_L139_S1.3160.99
131_L135_L1.2100.98
38_A42_G1.2090.98
39_M149_V1.2020.98
89_E93_R1.2000.98
63_I76_A1.1830.98
172_I175_I1.1730.98
182_L186_G1.1500.98
87_F91_V1.1420.98
6_L10_G1.1390.98
78_I117_L1.1230.97
128_H133_S1.1190.97
48_V88_T1.1190.97
182_L185_M1.1160.97
46_T142_V1.1040.97
181_S184_F1.0960.97
4_Y131_L1.0940.97
27_P45_T1.0770.97
182_L188_S1.0650.96
7_L10_G1.0650.96
17_F115_A1.0520.96
176_T184_F1.0370.96
183_A186_G1.0350.96
58_L62_W1.0210.95
169_G172_I1.0180.95
11_T139_S1.0160.95
184_F187_F0.9960.95
23_L118_G0.9940.95
4_Y132_Q0.9920.95
176_T181_S0.9910.95
45_T145_S0.9840.94
51_L55_C0.9840.94
8_F138_F0.9790.94
181_S185_M0.9760.94
61_T65_I0.9720.94
128_H132_Q0.9670.94
177_A181_S0.9650.94
11_T140_A0.9610.94
175_I181_S0.9540.93
39_M145_S0.9530.93
51_L54_I0.9510.93
167_F172_I0.9500.93
167_F171_A0.9430.93
32_S38_A0.9340.93
44_A81_I0.9300.93
56_A80_V0.9290.93
181_S188_S0.9210.92
180_M183_A0.9190.92
24_G115_A0.9160.92
77_F125_N0.9140.92
35_L38_A0.9090.92
177_A180_M0.9090.92
21_K67_L0.9080.92
73_R121_L0.9050.92
51_L134_A0.9050.92
176_T182_L0.8930.91
166_P171_A0.8880.91
98_V102_L0.8880.91
35_L163_V0.8840.91
8_F135_L0.8840.91
185_M189_G0.8790.90
78_I111_T0.8770.90
166_P169_G0.8740.90
56_A120_A0.8710.90
7_L123_N0.8700.90
32_S148_M0.8700.90
89_E107_L0.8620.89
180_M184_F0.8570.89
115_A118_G0.8530.89
18_V28_F0.8370.88
175_I178_G0.8340.88
53_S123_N0.8340.88
142_V146_L0.8190.87
7_L135_L0.8130.87
172_I176_T0.8060.86
18_V147_V0.8010.86
6_L14_V0.8000.86
42_G149_V0.7970.85
38_A149_V0.7960.85
164_P167_F0.7960.85
123_N128_H0.7920.85
53_S133_S0.7820.84
46_T141_A0.7810.84
17_F49_M0.7790.84
17_F21_K0.7760.84
76_A117_L0.7530.82
55_C80_V0.7510.82
171_A174_L0.7490.82
130_F133_S0.7490.82
168_R172_I0.7470.82
165_A170_N0.7460.81
43_L47_F0.7440.81
88_T117_L0.7430.81
60_D124_I0.7410.81
31_V148_M0.7400.81
164_P169_G0.7390.81
49_M116_V0.7340.80
49_M141_A0.7310.80
149_V153_A0.7300.80
180_M188_S0.7300.80
128_H136_Y0.7280.80
6_L188_S0.7270.80
24_G113_N0.7250.80
170_N185_M0.7200.79
6_L9_V0.7180.79
81_I120_A0.7170.79
151_F186_G0.7150.79
172_I177_A0.7130.78
11_T136_Y0.7130.78
86_Q90_M0.7110.78
177_A183_A0.7090.78
154_I176_T0.7050.78
34_K37_T0.7040.78
95_T98_V0.7030.77
39_M43_L0.7000.77
28_F151_F0.7000.77
122_L125_N0.6930.76
93_R97_P0.6910.76
10_G21_K0.6880.76
167_F176_T0.6850.76
157_R173_A0.6830.75
132_Q135_L0.6810.75
154_I186_G0.6770.75
36_E40_G0.6770.75
122_L136_Y0.6770.75
162_D168_R0.6730.74
96_S100_Y0.6710.74
37_T92_V0.6690.74
55_C84_V0.6680.74
38_A152_A0.6650.73
25_L45_T0.6630.73
110_I114_C0.6610.73
16_N143_G0.6600.73
175_I189_G0.6550.72
18_V25_L0.6520.72
89_E105_I0.6450.71
150_L154_I0.6440.71
107_L111_T0.6430.71
100_Y105_I0.6420.71
131_L134_A0.6420.71
92_V100_Y0.6400.71
45_T116_V0.6400.71
13_L19_L0.6390.70
4_Y7_L0.6370.70
4_Y8_F0.6360.70
13_L146_L0.6320.70
61_T127_G0.6300.69
112_T147_V0.6270.69
21_K122_L0.6260.69
86_Q107_L0.6220.68
73_R124_I0.6200.68
26_C114_C0.6180.68
24_G114_C0.6170.68
92_V107_L0.6140.67
57_W60_D0.6120.67
176_T185_M0.6100.67
103_L118_G0.6090.67
164_P170_N0.6070.67
65_I80_V0.6020.66
23_L84_V0.5980.65
49_M53_S0.5950.65
45_T144_F0.5950.65
48_V110_I0.5900.64
169_G175_I0.5890.64
57_W119_V0.5870.64
130_F134_A0.5870.64
83_V138_F0.5860.64
25_L151_F0.5850.64
42_G141_A0.5820.63
90_M137_G0.5800.63
23_L85_V0.5770.63
20_V106_F0.5770.63
186_G189_G0.5660.61
175_I184_F0.5650.61
184_F189_G0.5630.61
17_F141_A0.5600.60
175_I179_L0.5600.60
47_F141_A0.5600.60
174_L180_M0.5590.60
173_A176_T0.5590.60
179_L182_L0.5580.60
150_L180_M0.5570.60
26_C85_V0.5550.60
147_V151_F0.5530.59
167_F175_I0.5530.59
49_M118_G0.5510.59
73_R119_V0.5470.59
34_K160_V0.5460.58
138_F142_V0.5390.58
98_V101_R0.5390.58
58_L80_V0.5380.57
8_F11_T0.5350.57
10_G190_L0.5340.57
37_T102_L0.5330.57
79_L117_L0.5330.57
38_A145_S0.5320.57
42_G46_T0.5310.56
21_K112_T0.5310.56
44_A82_A0.5290.56
19_L24_G0.5280.56
61_T124_I0.5280.56
18_V144_F0.5220.55
21_K140_A0.5220.55
78_I127_G0.5210.55
40_G91_V0.5150.54
174_L178_G0.5140.54
40_G104_G0.5120.54
159_A162_D0.5110.54
166_P175_I0.5090.53
15_N140_A0.5090.53
60_D65_I0.5060.53
134_A137_G0.5050.53
84_V120_A0.5050.53
175_I182_L0.5040.53
87_F90_M0.5040.53
176_T187_F0.5030.52
174_L177_A0.5020.52
161_A182_L0.5010.52
119_V136_Y0.5010.52
56_A124_I0.5000.52
97_P100_Y0.5000.52
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4p6vE 1 0.9534 100 0.025 Contact Map
4p6vD 1 0.8705 100 0.178 Contact Map
3hzqA 3 0.3834 4 0.963 Contact Map
1iijA 1 0.171 2.2 0.967 Contact Map
4c4pB 1 0.1399 1.7 0.969 Contact Map
4rp9A 2 0.9896 1.5 0.97 Contact Map
2ls3A 1 0.1503 1.4 0.971 Contact Map
2xz3A 3 0.3057 1.4 0.971 Contact Map
4bbjA 1 0.3057 1.3 0.971 Contact Map
3vouA 4 0.5078 1.3 0.971 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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