GLGA - ECOLI - GREMLIN Contacts

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GLGA - Glycogen synthase

UniProt:	P0A6U8	Sequences: MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10377
Length:	477 (380)
Sequences:	25317 (19526)
Seq/√Len:	1001.6

ECOLI - GLGA WCAL WCAI RFAG WBBK RFAB WCAC
BACSU - GLGA YPJH YTCC EPSD TUAC COTSA EPSF YQGM TUAH YKVP CGEB
HALSA - Q9HQQ0 Q9HSW1 Q9HRP8 Q9HS45 Q9HSV4 Q9HSV2 Q9HQT2 Q9HRP9
SULSO - Q97ZD3 Q980C8 Q97V80 Q97XT7 Q97VL4 Q97UM0 Q97V61 Q97XT5 Q97XU2 Q97XT8 Q97UU3 Q7LXI2 Q97XT9 Q7LXM9 Q7LXF8 Q97XT1 Q97XF6 Q97XT6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
296_A	367_A	4.311	1.00
335_Q	339_L	4.121	1.00
323_Q	350_G	3.799	1.00
207_H	242_S	3.412	1.00
134_H	473_Y	3.313	1.00
292_V	323_Q	3.058	1.00
312_E	341_A	2.948	1.00
370_I	386_G	2.754	1.00
320_Q	436_R	2.738	1.00
33_D	467_K	2.603	1.00
216_A	220_T	2.603	1.00
316_G	429_W	2.602	1.00
441_L	444_R	2.582	1.00
453_R	457_A	2.553	1.00
35_V	470_R	2.523	1.00
293_P	439_F	2.479	1.00
316_G	432_L	2.419	1.00
38_R	130_P	2.361	1.00
455_A	459_D	2.358	1.00
318_L	348_Q	2.253	1.00
297_V	307_L	2.217	1.00
397_R	424_E	2.207	1.00
314_L	324_L	2.173	1.00
405_V	420_G	2.141	1.00
329_A	335_Q	2.131	1.00
294_L	325_A	2.105	1.00
312_E	428_A	2.074	1.00
397_R	402_A	2.073	1.00
33_D	470_R	2.070	1.00
454_Q	458_M	2.044	1.00
444_R	447_L	2.042	1.00
424_E	430_S	2.010	1.00
134_H	159_T	2.001	1.00
445_P	449_R	1.972	1.00
437_R	444_R	1.969	1.00
434_A	437_R	1.963	1.00
327_L	363_I	1.955	1.00
310_V	371_L	1.938	1.00
406_S	418_A	1.930	1.00
317_L	436_R	1.915	1.00
464_V	468_S	1.905	1.00
325_A	352_Q	1.874	1.00
421_F	434_A	1.860	1.00
295_F	369_V	1.856	1.00
158_F	205_A	1.856	1.00
343_A	346_P	1.846	1.00
437_R	441_L	1.836	1.00
419_S	455_A	1.818	1.00
427_N	430_S	1.816	1.00
29_A	32_A	1.773	1.00
370_I	391_T	1.762	1.00
342_A	351_V	1.754	1.00
38_R	80_Y	1.751	1.00
294_L	323_Q	1.751	1.00
29_A	463_Q	1.749	1.00
207_H	472_L	1.748	1.00
447_L	451_V	1.737	1.00
247_G	462_W	1.733	1.00
295_F	435_I	1.732	1.00
390_G	453_R	1.722	1.00
213_P	217_R	1.699	1.00
4_L	130_P	1.691	1.00
3_V	35_V	1.681	1.00
395_V	422_V	1.676	1.00
38_R	128_W	1.672	1.00
216_A	243_G	1.669	1.00
301_L	326_L	1.668	1.00
4_L	40_L	1.668	1.00
213_P	216_A	1.646	1.00
359_F	362_R	1.644	1.00
314_L	322_G	1.640	1.00
294_L	366_G	1.625	1.00
340_A	344_E	1.623	1.00
367_A	391_T	1.612	1.00
295_F	371_L	1.610	1.00
306_G	309_L	1.609	1.00
29_A	466_A	1.599	1.00
408_C	418_A	1.596	1.00
336_E	339_L	1.585	1.00
293_P	368_D	1.581	1.00
430_S	434_A	1.543	1.00
209_T	469_Y	1.522	1.00
442_W	445_P	1.492	1.00
428_A	432_L	1.484	1.00
421_F	437_R	1.477	1.00
436_R	440_V	1.474	1.00
451_V	454_Q	1.469	1.00
406_S	419_S	1.461	1.00
449_R	452_Q	1.459	1.00
213_P	403_D	1.455	1.00
298_V	360_S	1.447	1.00
468_S	471_E	1.446	1.00
216_A	241_L	1.435	1.00
310_V	324_L	1.428	1.00
5_H	30_Q	1.419	1.00
217_R	221_E	1.417	1.00
217_R	220_T	1.397	1.00
355_Y	363_I	1.397	1.00
450_F	454_Q	1.397	1.00
383_Q	401_L	1.396	1.00
135_A	156_S	1.387	1.00
470_R	474_Y	1.386	1.00
355_Y	359_F	1.378	1.00
336_E	340_A	1.375	1.00
5_H	27_P	1.367	1.00
315_P	319_E	1.335	1.00
446_S	450_F	1.332	1.00
430_S	433_R	1.325	1.00
210_A	241_L	1.321	1.00
24_G	28_A	1.314	1.00
467_K	471_E	1.310	1.00
293_P	369_V	1.299	1.00
464_V	467_K	1.294	1.00
332_P	337_G	1.293	1.00
423_F	434_A	1.292	1.00
356_H	359_F	1.284	1.00
283_A	362_R	1.275	1.00
161_H	381_L	1.273	1.00
406_S	455_A	1.273	1.00
292_V	321_G	1.266	1.00
213_P	243_G	1.265	1.00
377_E	380_G	1.265	1.00
424_E	427_N	1.265	1.00
418_A	451_V	1.258	1.00
220_T	238_E	1.257	1.00
325_A	350_G	1.255	1.00
136_H	161_H	1.254	1.00
297_V	310_V	1.253	1.00
244_V	472_L	1.247	1.00
317_L	322_G	1.246	1.00
313_A	431_L	1.241	1.00
444_R	448_W	1.229	1.00
341_A	344_E	1.228	1.00
395_V	405_V	1.223	1.00
211_V	246_N	1.212	1.00
308_D	375_R	1.209	1.00
449_R	453_R	1.206	1.00
306_G	375_R	1.205	1.00
38_R	78_G	1.198	1.00
316_G	428_A	1.193	1.00
209_T	472_L	1.188	1.00
5_H	136_H	1.185	1.00
253_W	389_Y	1.179	1.00
360_S	364_M	1.169	1.00
209_T	244_V	1.168	1.00
294_L	368_D	1.167	1.00
327_L	355_Y	1.165	1.00
296_A	364_M	1.160	1.00
433_R	437_R	1.155	1.00
327_L	352_Q	1.154	1.00
293_P	322_G	1.143	1.00
448_W	451_V	1.135	1.00
27_P	39_V	1.135	1.00
314_L	317_L	1.132	1.00
421_F	438_A	1.131	1.00
293_P	321_G	1.128	1.00
245_L	460_F	1.124	1.00
421_F	448_W	1.122	1.00
305_K	377_E	1.116	1.00
391_T	449_R	1.116	1.00
316_G	319_E	1.106	1.00
316_G	320_Q	1.103	1.00
308_D	337_G	1.100	1.00
315_P	318_L	1.094	1.00
395_V	401_L	1.091	1.00
309_L	426_S	1.090	1.00
372_V	383_Q	1.089	1.00
29_A	33_D	1.088	1.00
461_S	464_V	1.087	1.00
396_R	423_F	1.082	1.00
298_V	364_M	1.080	1.00
249_D	253_W	1.079	1.00
386_G	391_T	1.078	1.00
132_V	473_Y	1.077	1.00
307_L	326_L	1.076	1.00
352_Q	355_Y	1.076	1.00
372_V	382_T	1.075	1.00
210_A	216_A	1.072	1.00
26_L	469_Y	1.070	1.00
278_R	282_I	1.068	1.00
279_Q	283_A	1.066	1.00
342_A	345_Y	1.063	1.00
429_W	433_R	1.056	1.00
454_Q	457_A	1.052	1.00
407_D	434_A	1.050	1.00
22_V	246_N	1.048	1.00
252_I	361_H	1.034	1.00
156_S	205_A	1.033	1.00
211_V	378_P	1.029	1.00
309_L	428_A	1.023	1.00
374_S	377_E	1.022	1.00
296_A	327_L	1.009	1.00
296_A	363_I	1.009	1.00
253_W	361_H	1.003	1.00
317_L	435_I	1.000	1.00
308_D	341_A	1.000	1.00
301_L	335_Q	0.997	1.00
304_Q	376_F	0.997	1.00
305_K	374_S	0.988	1.00
31_I	34_G	0.985	1.00
305_K	382_T	0.980	1.00
22_V	381_L	0.979	1.00
322_G	439_F	0.978	1.00
283_A	359_F	0.977	1.00
205_A	208_I	0.975	1.00
432_L	436_R	0.975	1.00
244_V	469_Y	0.974	1.00
135_A	158_F	0.972	1.00
210_A	219_I	0.970	1.00
421_F	444_R	0.967	1.00
371_L	435_I	0.966	1.00
340_A	343_A	0.965	1.00
369_V	438_A	0.961	1.00
357_E	360_S	0.961	1.00
27_P	31_I	0.958	1.00
300_R	304_Q	0.956	1.00
311_L	342_A	0.947	1.00
361_H	365_G	0.944	1.00
138_W	141_G	0.942	1.00
471_E	474_Y	0.939	1.00
295_F	314_L	0.930	1.00
442_W	446_S	0.929	1.00
408_C	419_S	0.927	1.00
249_D	252_I	0.927	1.00
387_L	393_P	0.926	1.00
32_A	463_Q	0.920	1.00
279_Q	282_I	0.916	1.00
370_I	382_T	0.911	1.00
339_L	343_A	0.910	1.00
155_K	206_D	0.909	1.00
25_A	28_A	0.909	1.00
448_W	452_Q	0.907	1.00
157_V	209_T	0.906	1.00
211_V	215_Y	0.905	1.00
369_V	435_I	0.903	1.00
405_V	419_S	0.901	1.00
250_E	461_S	0.900	1.00
438_A	448_W	0.899	1.00
298_V	327_L	0.899	1.00
462_W	465_A	0.899	1.00
308_D	312_E	0.896	1.00
361_H	389_Y	0.894	1.00
364_M	389_Y	0.891	1.00
280_L	284_M	0.888	1.00
394_L	434_A	0.887	1.00
25_A	462_W	0.879	1.00
71_F	78_G	0.877	1.00
390_G	450_F	0.875	1.00
394_L	423_F	0.875	1.00
465_A	468_S	0.874	1.00
365_G	389_Y	0.873	1.00
218_E	221_E	0.871	1.00
132_V	157_V	0.867	1.00
447_L	450_F	0.867	1.00
75_N	78_G	0.867	1.00
313_A	432_L	0.865	1.00
329_A	354_G	0.863	1.00
310_V	373_P	0.862	1.00
394_L	435_I	0.859	1.00
375_R	426_S	0.858	1.00
399_G	402_A	0.857	1.00
120_M	123_G	0.856	1.00
242_S	472_L	0.852	1.00
392_L	449_R	0.851	1.00
312_E	315_P	0.849	1.00
22_V	161_H	0.849	1.00
445_P	448_W	0.849	1.00
392_L	455_A	0.848	1.00
10_M	24_G	0.847	1.00
300_R	305_K	0.846	1.00
17_G	20_A	0.845	1.00
364_M	382_T	0.843	1.00
324_L	349_V	0.842	1.00
148_A	206_D	0.839	1.00
309_L	396_R	0.838	1.00
314_L	348_Q	0.837	1.00
22_V	136_H	0.832	1.00
325_A	363_I	0.829	1.00
33_D	466_A	0.829	1.00
379_C	384_L	0.824	1.00
31_I	37_A	0.823	1.00
459_D	468_S	0.822	1.00
405_V	422_V	0.818	1.00
432_L	435_I	0.817	1.00
337_G	340_A	0.816	1.00
27_P	37_A	0.815	1.00
441_L	445_P	0.813	1.00
309_L	375_R	0.807	1.00
407_D	418_A	0.806	1.00
25_A	29_A	0.804	1.00
245_L	403_D	0.803	1.00
136_H	159_T	0.801	1.00
295_F	324_L	0.799	1.00
463_Q	467_K	0.798	1.00
250_E	388_K	0.796	1.00
159_T	473_Y	0.791	1.00
423_F	430_S	0.791	1.00
9_E	20_A	0.787	1.00
21_D	25_A	0.787	1.00
461_S	465_A	0.784	1.00
291_K	321_G	0.782	1.00
199_K	203_Y	0.781	1.00
317_L	439_F	0.779	1.00
433_R	436_R	0.779	1.00
287_K	292_V	0.778	1.00
121_A	124_L	0.777	1.00
157_V	473_Y	0.776	1.00
141_G	144_P	0.776	1.00
352_Q	363_I	0.774	1.00
323_Q	348_Q	0.773	1.00
321_G	348_Q	0.772	1.00
383_Q	404_T	0.770	1.00
297_V	373_P	0.770	1.00
302_T	331_D	0.768	1.00
312_E	316_G	0.764	1.00
113_L	116_V	0.764	1.00
369_V	394_L	0.764	1.00
446_S	449_R	0.763	1.00
130_P	154_A	0.763	1.00
296_A	391_T	0.763	1.00
36_D	78_G	0.762	1.00
467_K	470_R	0.759	1.00
233_Q	238_E	0.758	1.00
338_F	351_V	0.757	1.00
342_A	349_V	0.756	1.00
299_S	307_L	0.755	1.00
280_L	366_G	0.754	1.00
23_I	136_H	0.753	1.00
320_Q	433_R	0.753	1.00
363_I	366_G	0.753	1.00
72_G	81_L	0.751	1.00
119_E	123_G	0.748	1.00
373_P	431_L	0.748	1.00
407_D	419_S	0.745	1.00
387_L	452_Q	0.741	1.00
394_L	438_A	0.740	1.00
387_L	419_S	0.740	1.00
242_S	468_S	0.737	1.00
380_G	383_Q	0.737	1.00
338_F	341_A	0.736	1.00
337_G	341_A	0.735	1.00
7_C	23_I	0.735	1.00
28_A	75_N	0.735	1.00
469_Y	473_Y	0.730	1.00
161_H	211_V	0.730	1.00
362_R	365_G	0.726	1.00
380_G	401_L	0.725	1.00
364_M	370_I	0.724	1.00
293_P	442_W	0.723	1.00
317_L	432_L	0.722	1.00
159_T	209_T	0.720	1.00
22_V	159_T	0.715	1.00
294_L	367_A	0.709	1.00
443_S	447_L	0.708	1.00
311_L	349_V	0.707	1.00
306_G	373_P	0.706	1.00
429_W	432_L	0.705	1.00
81_L	84_A	0.704	1.00
386_G	393_P	0.702	1.00
118_A	122_S	0.701	1.00
280_L	363_I	0.699	1.00
455_A	460_F	0.699	1.00
339_L	351_V	0.699	1.00
33_D	463_Q	0.698	1.00
314_L	318_L	0.696	1.00
210_A	215_Y	0.692	1.00
295_F	322_G	0.692	1.00
287_K	290_D	0.691	1.00
247_G	465_A	0.691	1.00
452_Q	455_A	0.688	1.00
200_A	204_Y	0.688	1.00
25_A	249_D	0.688	1.00
441_L	447_L	0.687	1.00
31_I	76_G	0.687	1.00
156_S	206_D	0.684	1.00
312_E	344_E	0.683	1.00
320_Q	440_V	0.678	1.00
112_L	116_V	0.678	1.00
141_G	145_A	0.678	1.00
106_N	109_R	0.678	1.00
309_L	431_L	0.674	1.00
387_L	455_A	0.673	1.00
368_D	445_P	0.673	1.00
290_D	293_P	0.673	1.00
397_R	422_V	0.671	1.00
342_A	346_P	0.671	1.00
364_M	386_G	0.670	1.00
428_A	431_L	0.670	1.00
110_F	113_L	0.669	1.00
392_L	438_A	0.668	1.00
246_N	381_L	0.667	1.00
87_L	90_R	0.665	1.00
308_D	338_F	0.665	1.00
431_L	435_I	0.665	1.00
245_L	465_A	0.661	1.00
438_A	445_P	0.660	1.00
325_A	367_A	0.658	1.00
383_Q	393_P	0.657	1.00
146_Y	150_R	0.656	1.00
372_V	401_L	0.654	1.00
161_H	246_N	0.653	1.00
295_F	439_F	0.652	1.00
443_S	446_S	0.652	1.00
451_V	455_A	0.652	1.00
382_T	386_G	0.649	1.00
129_R	154_A	0.646	1.00
371_L	431_L	0.645	1.00
278_R	290_D	0.644	1.00
462_W	466_A	0.644	1.00
277_K	281_Q	0.643	1.00
144_P	148_A	0.643	1.00
309_L	312_E	0.643	1.00
250_E	457_A	0.642	1.00
5_H	37_A	0.642	1.00
29_A	462_W	0.640	1.00
220_T	240_R	0.639	1.00
297_V	326_L	0.638	1.00
253_W	388_K	0.636	1.00
212_S	215_Y	0.634	1.00
400_G	403_D	0.632	1.00
438_A	444_R	0.630	1.00
28_A	32_A	0.629	1.00
408_C	437_R	0.627	1.00
133_V	154_A	0.626	1.00
196_S	199_K	0.624	1.00
398_T	401_L	0.623	1.00
142_L	145_A	0.616	1.00
445_P	452_Q	0.616	1.00
219_I	241_L	0.615	1.00
317_L	320_Q	0.614	1.00
372_V	380_G	0.614	1.00
423_F	431_L	0.614	1.00
26_L	466_A	0.614	1.00
245_L	379_C	0.614	1.00
313_A	316_G	0.613	1.00
357_E	361_H	0.613	1.00
220_T	241_L	0.612	1.00
215_Y	378_P	0.612	1.00
339_L	342_A	0.610	1.00
256_E	365_G	0.610	1.00
158_F	198_L	0.609	1.00
303_S	332_P	0.608	1.00
18_G	22_V	0.607	1.00
17_G	300_R	0.606	1.00
114_G	117_G	0.606	1.00
450_F	453_R	0.605	1.00
459_D	464_V	0.601	1.00
327_L	330_G	0.601	1.00
364_M	391_T	0.600	1.00
419_S	451_V	0.598	1.00
315_P	344_E	0.598	1.00
313_A	428_A	0.596	1.00
162_N	300_R	0.596	1.00
160_V	202_L	0.595	1.00
293_P	445_P	0.595	1.00
159_T	381_L	0.592	1.00
387_L	449_R	0.592	1.00
113_L	117_G	0.590	1.00
313_A	317_L	0.590	1.00
106_N	110_F	0.590	1.00
138_W	145_A	0.589	1.00
301_L	330_G	0.589	1.00
246_N	380_G	0.589	1.00
300_R	382_T	0.589	1.00
119_E	122_S	0.588	1.00
377_E	382_T	0.587	1.00
438_A	441_L	0.585	1.00
218_E	222_P	0.585	1.00
330_G	335_Q	0.583	1.00
19_L	137_D	0.583	1.00
301_L	307_L	0.582	1.00
19_L	22_V	0.582	1.00
437_R	440_V	0.581	1.00
277_K	362_R	0.580	1.00
311_L	341_A	0.580	1.00
378_P	399_G	0.580	1.00
465_A	469_Y	0.579	1.00
407_D	421_F	0.578	1.00
315_P	345_Y	0.577	1.00
112_L	115_W	0.577	1.00
134_H	469_Y	0.576	1.00
105_D	108_L	0.576	1.00
214_T	403_D	0.576	1.00
111_A	114_G	0.574	1.00
148_A	156_S	0.574	1.00
277_K	366_G	0.574	1.00
379_C	460_F	0.573	1.00
138_W	144_P	0.572	1.00
311_L	345_Y	0.571	1.00
35_V	131_D	0.571	1.00
245_L	468_S	0.571	1.00
213_P	245_L	0.570	1.00
22_V	469_Y	0.568	1.00
310_V	314_L	0.567	1.00
426_S	431_L	0.566	1.00
21_D	24_G	0.566	1.00
160_V	219_I	0.565	1.00
248_V	388_K	0.564	1.00
254_S	257_T	0.563	1.00
109_R	112_L	0.562	1.00
4_L	133_V	0.561	1.00
18_G	305_K	0.560	1.00
402_A	422_V	0.560	1.00
157_V	207_H	0.560	1.00
162_N	378_P	0.559	1.00
282_I	290_D	0.556	1.00
25_A	381_L	0.556	1.00
159_T	469_Y	0.554	1.00
296_A	325_A	0.553	1.00
380_G	404_T	0.553	1.00
390_G	449_R	0.552	1.00
4_L	38_R	0.552	1.00
145_A	148_A	0.551	1.00
120_M	124_L	0.551	1.00
214_T	217_R	0.551	1.00
145_A	149_A	0.550	1.00
21_D	357_E	0.550	1.00
216_A	238_E	0.549	1.00
252_I	357_E	0.549	1.00
306_G	426_S	0.548	1.00
311_L	338_F	0.548	1.00
244_V	468_S	0.548	1.00
195_I	199_K	0.546	1.00
293_P	296_A	0.543	1.00
79_I	85_P	0.543	1.00
139_H	142_L	0.542	1.00
304_Q	378_P	0.540	1.00
76_G	79_I	0.540	1.00
108_L	111_A	0.540	1.00
296_A	370_I	0.539	1.00
383_Q	395_V	0.539	1.00
105_D	109_R	0.538	1.00
22_V	462_W	0.538	1.00
144_P	149_A	0.538	1.00
355_Y	360_S	0.536	1.00
130_P	133_V	0.535	1.00
5_H	473_Y	0.534	1.00
138_W	142_L	0.533	1.00
134_H	157_V	0.533	1.00
111_A	115_W	0.532	1.00
396_R	425_D	0.531	1.00
146_Y	149_A	0.529	1.00
436_R	439_F	0.527	1.00
214_T	218_E	0.525	1.00
152_R	155_K	0.524	1.00
326_L	349_V	0.523	1.00
207_H	240_R	0.522	1.00
192_N	195_I	0.521	1.00
254_S	365_G	0.518	1.00
214_T	402_A	0.518	1.00
303_S	308_D	0.518	1.00
196_S	200_A	0.518	1.00
301_L	351_V	0.518	1.00
281_Q	323_Q	0.517	1.00
73_H	78_G	0.516	1.00
251_K	254_S	0.516	1.00
8_S	12_P	0.516	1.00
439_F	442_W	0.516	1.00
384_L	460_F	0.515	1.00
132_V	155_K	0.515	1.00
431_L	434_A	0.513	1.00
35_V	474_Y	0.510	1.00
172_H	175_N	0.507	1.00
211_V	380_G	0.506	1.00
115_W	119_E	0.505	1.00
137_D	162_N	0.504	1.00
249_D	462_W	0.504	1.00
138_W	148_A	0.503	1.00
132_V	206_D	0.502	1.00
466_A	470_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qzsA	1	0.9874	100	0.196	Contact Map
1rzuA	1	0.9853	100	0.204	Contact Map
3vueA	1	0.9329	100	0.24	Contact Map
3froA	3	0.8805	100	0.293	Contact Map
4qlbA	3	0.9287	100	0.296	Contact Map
4n9wA	1	0.7254	100	0.304	Contact Map
2r60A	1	0.8616	100	0.305	Contact Map
3c48A	2	0.8008	100	0.307	Contact Map
4hlnA	1	0.9329	100	0.308	Contact Map
3s28A	4	0.9119	100	0.329	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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