FLGH - ECOLI - GREMLIN Contacts

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FLGH - Flagellar L-ring protein

UniProt:	P0A6S0	Sequences: MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG20264
Length:	232 (216)
Sequences:	1377 (1021)
Seq/√Len:	69.5

ECOLI - FLGH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
78_L	184_V	4.661	1.00
160_N	183_V	3.677	1.00
154_Q	162_H	3.494	1.00
180_F	200_V	3.188	1.00
95_N	133_N	2.982	1.00
97_S	131_T	2.804	1.00
152_V	161_L	2.724	1.00
163_V	200_V	2.672	1.00
185_N	188_T	2.654	1.00
80_I	200_V	2.580	1.00
78_L	150_V	2.530	1.00
150_V	163_V	2.422	1.00
78_L	189_I	2.413	1.00
80_I	163_V	2.381	1.00
74_I	154_Q	2.322	1.00
95_N	137_G	2.307	1.00
81_V	194_T	2.220	1.00
94_A	138_A	2.202	1.00
99_D	131_T	2.199	1.00
94_A	217_Q	2.074	1.00
101_K	131_T	2.029	1.00
18_S	21_G	2.015	1.00
34_A	37_A	1.962	1.00
190_S	194_T	1.962	1.00
140_A	174_G	1.949	1.00
99_D	129_G	1.925	1.00
146_G	197_S	1.894	1.00
31_V	34_A	1.833	1.00
95_N	135_K	1.828	1.00
98_R	223_Q	1.826	1.00
184_V	195_V	1.780	1.00
156_L	162_H	1.773	1.00
166_E	179_R	1.763	1.00
93_S	139_N	1.721	1.00
35_T	38_Q	1.708	1.00
48_N	53_Q	1.701	1.00
103_N	125_E	1.681	1.00
99_D	133_N	1.680	1.00
34_A	38_Q	1.653	0.99
12_S	16_V	1.608	0.99
84_E	197_S	1.603	0.99
90_K	144_F	1.548	0.99
80_I	180_F	1.539	0.99
32_Q	35_T	1.531	0.99
101_K	129_G	1.529	0.99
212_Y	219_M	1.526	0.99
32_Q	36_S	1.495	0.99
97_S	135_K	1.493	0.99
176_E	207_Y	1.480	0.99
170_A	208_V	1.472	0.99
29_P	33_G	1.468	0.99
86_V	176_E	1.449	0.99
107_D	125_E	1.444	0.99
179_R	206_E	1.444	0.99
90_K	174_G	1.400	0.98
167_K	176_E	1.399	0.98
36_S	39_P	1.383	0.98
79_T	149_T	1.379	0.98
29_P	32_Q	1.378	0.98
83_Q	196_P	1.375	0.98
74_I	155_V	1.372	0.98
82_L	146_G	1.348	0.98
172_N	209_G	1.343	0.98
11_I	16_V	1.321	0.97
218_N	224_R	1.318	0.97
31_V	35_T	1.318	0.97
93_S	135_K	1.306	0.97
173_Q	214_N	1.298	0.97
96_A	216_A	1.282	0.97
31_V	36_S	1.277	0.97
150_V	165_G	1.274	0.97
69_R	187_R	1.264	0.97
147_T	198_T	1.262	0.96
90_K	176_E	1.259	0.96
104_F	107_D	1.252	0.96
162_H	183_V	1.251	0.96
151_T	202_D	1.246	0.96
88_A	142_N	1.241	0.96
11_I	15_L	1.238	0.96
31_V	37_A	1.237	0.96
87_S	141_S	1.228	0.96
64_P	67_E	1.220	0.96
84_E	169_I	1.216	0.96
147_T	199_Q	1.202	0.95
91_S	137_G	1.190	0.95
226_F	230_S	1.169	0.95
35_T	39_P	1.164	0.94
105_G	127_S	1.162	0.94
75_G	165_G	1.160	0.94
219_M	227_L	1.143	0.94
16_V	20_T	1.141	0.94
127_S	131_T	1.106	0.93
173_Q	218_N	1.101	0.93
49_G	52_F	1.085	0.92
94_A	134_G	1.084	0.92
30_L	33_G	1.078	0.92
86_V	146_G	1.077	0.92
134_G	211_G	1.073	0.92
103_N	129_G	1.072	0.92
148_L	178_I	1.068	0.91
93_S	137_G	1.065	0.91
136_G	213_I	1.063	0.91
32_Q	38_Q	1.062	0.91
144_F	184_V	1.045	0.91
168_Q	204_R	1.027	0.90
97_S	133_N	1.027	0.90
91_S	139_N	1.027	0.90
33_G	37_A	1.024	0.90
142_N	219_M	1.018	0.89
81_V	147_T	1.013	0.89
168_Q	208_V	0.996	0.88
146_G	176_E	0.989	0.88
94_A	172_N	0.988	0.88
142_N	174_G	0.982	0.88
89_S	141_S	0.981	0.88
11_I	14_L	0.972	0.87
173_Q	217_Q	0.968	0.87
86_V	226_F	0.959	0.86
15_L	19_L	0.940	0.85
142_N	172_N	0.935	0.85
30_L	34_A	0.934	0.85
102_T	126_A	0.930	0.85
170_A	175_T	0.925	0.84
82_L	174_G	0.918	0.84
66_F	183_V	0.915	0.84
188_T	211_G	0.914	0.84
136_G	211_G	0.907	0.83
142_N	176_E	0.905	0.83
147_T	197_S	0.899	0.83
81_V	190_S	0.884	0.82
95_N	139_N	0.883	0.81
77_T	168_Q	0.882	0.81
113_L	180_F	0.880	0.81
171_I	174_G	0.874	0.81
172_N	217_Q	0.867	0.80
139_N	143_T	0.866	0.80
160_N	186_P	0.864	0.80
140_A	176_E	0.864	0.80
181_S	204_R	0.855	0.79
109_V	124_V	0.853	0.79
72_R	225_F	0.851	0.79
33_G	39_P	0.846	0.79
86_V	142_N	0.841	0.78
142_N	166_E	0.840	0.78
77_T	135_K	0.836	0.78
90_K	167_K	0.831	0.77
196_P	199_Q	0.831	0.77
73_N	155_V	0.829	0.77
51_I	151_T	0.829	0.77
164_V	181_S	0.827	0.77
150_V	180_F	0.825	0.77
140_A	185_N	0.825	0.77
212_Y	215_E	0.824	0.77
88_A	152_V	0.821	0.77
173_Q	212_Y	0.820	0.76
142_N	177_F	0.814	0.76
14_L	19_L	0.812	0.76
101_K	127_S	0.808	0.75
16_V	23_A	0.808	0.75
11_I	27_S	0.807	0.75
84_E	146_G	0.803	0.75
171_I	176_E	0.800	0.75
18_S	43_P	0.793	0.74
12_S	18_S	0.790	0.74
106_F	126_A	0.787	0.73
27_S	31_V	0.787	0.73
146_G	174_G	0.780	0.73
82_L	140_A	0.777	0.72
70_R	97_S	0.772	0.72
154_Q	161_L	0.772	0.72
140_A	171_I	0.772	0.72
165_G	207_Y	0.771	0.72
96_A	136_G	0.771	0.72
219_M	223_Q	0.764	0.71
130_N	214_N	0.763	0.71
84_E	167_K	0.763	0.71
41_P	72_R	0.757	0.71
22_C	75_G	0.748	0.70
70_R	230_S	0.748	0.70
52_F	56_Q	0.747	0.69
140_A	207_Y	0.742	0.69
90_K	207_Y	0.741	0.69
16_V	24_W	0.739	0.69
103_N	127_S	0.738	0.69
165_G	203_A	0.737	0.68
52_F	197_S	0.736	0.68
209_G	214_N	0.724	0.67
10_A	16_V	0.722	0.67
25_I	28_T	0.722	0.67
142_N	207_Y	0.718	0.66
96_A	227_L	0.713	0.66
42_G	129_G	0.708	0.65
126_A	132_F	0.703	0.65
226_F	229_L	0.701	0.65
85_N	143_T	0.699	0.64
104_F	128_G	0.697	0.64
92_S	217_Q	0.696	0.64
15_L	18_S	0.694	0.64
67_E	72_R	0.688	0.63
88_A	200_V	0.685	0.63
72_R	186_P	0.682	0.62
174_G	207_Y	0.678	0.62
13_S	17_L	0.676	0.62
78_L	230_S	0.669	0.61
90_K	142_N	0.667	0.61
94_A	199_Q	0.664	0.60
82_L	150_V	0.658	0.60
138_A	217_Q	0.655	0.59
44_T	131_T	0.652	0.59
35_T	164_V	0.651	0.59
168_Q	175_T	0.642	0.58
142_N	167_K	0.642	0.58
138_A	173_Q	0.641	0.58
49_G	167_K	0.641	0.58
140_A	214_N	0.639	0.57
151_T	201_A	0.639	0.57
50_S	53_Q	0.638	0.57
89_S	137_G	0.638	0.57
205_I	232_M	0.635	0.57
94_A	213_I	0.634	0.57
70_R	176_E	0.633	0.57
229_L	232_M	0.632	0.57
180_F	205_I	0.629	0.56
62_Y	93_S	0.627	0.56
204_R	208_V	0.625	0.56
173_Q	220_G	0.622	0.55
55_A	62_Y	0.620	0.55
171_I	217_Q	0.618	0.55
25_I	145_S	0.614	0.54
50_S	56_Q	0.609	0.54
181_S	200_V	0.607	0.54
65_L	144_F	0.603	0.53
92_S	138_A	0.601	0.53
149_T	212_Y	0.600	0.53
23_A	26_P	0.600	0.53
129_G	133_N	0.600	0.53
90_K	138_A	0.599	0.53
86_V	169_I	0.598	0.53
10_A	38_Q	0.592	0.52
81_V	192_S	0.591	0.52
68_D	94_A	0.590	0.52
211_G	220_G	0.589	0.51
32_Q	37_A	0.588	0.51
124_V	226_F	0.588	0.51
11_I	103_N	0.585	0.51
52_F	146_G	0.583	0.51
171_I	227_L	0.582	0.51
37_A	40_V	0.582	0.51
64_P	181_S	0.581	0.51
52_F	122_A	0.581	0.51
17_L	23_A	0.580	0.50
80_I	188_T	0.575	0.50
33_G	36_S	0.575	0.50
112_Y	124_V	0.574	0.50
81_V	191_G	0.574	0.50
99_D	103_N	0.573	0.50
93_S	101_K	0.572	0.49
56_Q	163_V	0.572	0.49
73_N	127_S	0.570	0.49
46_V	135_K	0.570	0.49
167_K	197_S	0.569	0.49
222_L	226_F	0.569	0.49
83_Q	198_T	0.568	0.49
85_N	197_S	0.567	0.49
89_S	139_N	0.566	0.49
157_V	160_N	0.565	0.49
38_Q	162_H	0.563	0.48
106_F	205_I	0.563	0.48
17_L	21_G	0.560	0.48
88_A	155_V	0.558	0.48
64_P	145_S	0.556	0.47
100_G	223_Q	0.555	0.47
148_L	166_E	0.554	0.47
161_L	200_V	0.554	0.47
100_G	104_F	0.553	0.47
92_S	209_G	0.552	0.47
168_Q	195_V	0.552	0.47
186_P	206_E	0.551	0.47
88_A	208_V	0.550	0.47
142_N	146_G	0.550	0.47
146_G	179_R	0.548	0.47
70_R	207_Y	0.548	0.47
40_V	55_A	0.548	0.47
104_F	126_A	0.547	0.46
64_P	70_R	0.547	0.46
38_Q	154_Q	0.546	0.46
67_E	160_N	0.545	0.46
98_R	130_N	0.539	0.45
54_S	152_V	0.539	0.45
108_T	122_A	0.539	0.45
29_P	38_Q	0.539	0.45
180_F	214_N	0.539	0.45
25_I	162_H	0.539	0.45
107_D	122_A	0.537	0.45
88_A	136_G	0.537	0.45
47_A	99_D	0.536	0.45
15_L	54_S	0.536	0.45
10_A	105_G	0.535	0.45
12_S	20_T	0.535	0.45
11_I	116_L	0.533	0.45
41_P	154_Q	0.532	0.45
68_D	71_P	0.529	0.44
66_F	168_Q	0.528	0.44
100_G	128_G	0.526	0.44
28_T	215_E	0.526	0.44
113_L	120_A	0.523	0.44
154_Q	158_N	0.522	0.43
160_N	202_D	0.522	0.43
146_G	220_G	0.519	0.43
164_V	179_R	0.518	0.43
147_T	194_T	0.517	0.43
112_Y	121_R	0.516	0.43
185_N	211_G	0.513	0.42
90_K	177_F	0.513	0.42
52_F	62_Y	0.512	0.42
90_K	178_I	0.512	0.42
100_G	127_S	0.511	0.42
48_N	229_L	0.511	0.42
166_E	177_F	0.511	0.42
219_M	224_R	0.509	0.42
63_Q	67_E	0.507	0.42
49_G	197_S	0.506	0.42
164_V	225_F	0.504	0.41
11_I	20_T	0.500	0.41

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zbiC	1	0.1164	79.3	0.938	Contact Map
3bdlA	2	0.3276	26	0.957	Contact Map
3ucpA	1	0.6207	25.8	0.957	Contact Map
4w65A	1	0.4397	15.7	0.961	Contact Map
3pmqA	1	0.5172	15.6	0.961	Contact Map
4n4rB	1	0.5948	15.3	0.961	Contact Map
1yr2A	1	0.7241	13.5	0.962	Contact Map
3k6vA	1	0.4784	10.9	0.964	Contact Map
3b55A	1	0.4353	10.2	0.964	Contact Map
2dgyA	1	0.3664	8.5	0.965	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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