DADA - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

DADA - D-amino acid dehydrogenase

UniProt:	P0A6J5	Sequences: MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11407
Length:	432 (392)
Sequences:	5758 (4596)
Seq/√Len:	232.1

ECOLI - DADA MTOX PUUB LHGO MNMC GLPA
BACSU - GLOX YURR YHFW
HALSA - Q9HSD9
SULSO - Q97ZD5 Q980U0 Q97VT4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
211_A	216_V	5.010	1.00
31_R	223_P	4.066	1.00
4_V	246_A	4.047	1.00
226_Q	238_K	3.821	1.00
239_C	242_E	3.372	1.00
228_L	238_K	3.367	1.00
27_T	219_R	3.105	1.00
208_A	212_E	3.055	1.00
223_P	240_G	2.983	1.00
168_E	171_R	2.976	1.00
20_N	216_V	2.923	1.00
29_I	244_I	2.833	1.00
24_H	399_S	2.706	1.00
228_L	236_G	2.704	1.00
4_V	29_I	2.664	1.00
35_A	220_F	2.480	1.00
144_E	148_E	2.477	1.00
8_S	35_A	2.463	1.00
25_E	217_K	2.461	1.00
4_V	237_V	2.455	1.00
238_K	243_V	2.409	1.00
228_L	243_V	2.347	1.00
225_D	240_G	2.310	1.00
202_L	205_Q	2.286	1.00
22_A	399_S	2.270	1.00
227_L	234_I	2.238	1.00
3_V	24_H	2.187	1.00
208_A	218_F	2.083	1.00
4_V	244_I	2.079	1.00
209_R	212_E	1.980	1.00
222_T	239_C	1.963	1.00
225_D	238_K	1.950	1.00
35_A	208_A	1.939	1.00
28_V	218_F	1.937	1.00
236_G	243_V	1.918	1.00
20_N	211_A	1.910	1.00
391_G	395_S	1.895	1.00
20_N	214_A	1.874	1.00
18_Y	391_G	1.870	1.00
376_N	390_S	1.848	1.00
351_W	354_L	1.816	1.00
311_G	314_A	1.811	1.00
296_T	299_I	1.800	1.00
15_S	250_V	1.794	1.00
27_T	217_K	1.780	1.00
297_Y	302_T	1.779	1.00
211_A	218_F	1.754	1.00
353_G	356_P	1.750	1.00
301_I	304_F	1.731	1.00
298_K	302_T	1.730	1.00
43_N	48_S	1.727	1.00
374_W	398_L	1.727	1.00
21_Q	125_E	1.681	1.00
275_Y	281_I	1.680	1.00
6_L	253_F	1.679	1.00
151_T	158_E	1.644	1.00
172_L	189_G	1.643	1.00
230_D	235_Y	1.629	1.00
29_I	219_R	1.609	1.00
309_R	312_G	1.606	1.00
272_L	276_S	1.598	1.00
336_R	341_R	1.566	1.00
21_Q	214_A	1.565	1.00
310_V	313_M	1.563	1.00
29_I	246_A	1.563	1.00
219_R	244_I	1.558	1.00
226_Q	263_G	1.532	1.00
277_L	280_P	1.524	1.00
219_R	222_T	1.510	1.00
154_I	158_E	1.507	1.00
257_S	377_T	1.506	1.00
272_L	275_Y	1.503	1.00
396_D	401_R	1.501	1.00
8_S	28_V	1.501	1.00
275_Y	282_A	1.499	1.00
297_Y	300_A	1.499	1.00
287_A	292_I	1.488	1.00
309_R	314_A	1.486	1.00
232_E	371_K	1.484	1.00
374_W	394_L	1.477	1.00
107_R	110_R	1.461	1.00
246_A	249_Y	1.461	1.00
310_V	314_A	1.456	1.00
325_Q	329_E	1.435	1.00
260_M	263_G	1.426	1.00
229_C	370_F	1.423	1.00
77_V	194_N	1.421	1.00
312_G	316_I	1.421	1.00
320_N	324_L	1.421	1.00
329_E	333_M	1.420	1.00
295_E	298_K	1.416	1.00
95_N	100_H	1.414	1.00
239_C	244_I	1.409	1.00
3_V	248_A	1.395	1.00
273_K	276_S	1.392	1.00
97_D	100_H	1.384	1.00
297_Y	301_I	1.380	1.00
201_Q	205_Q	1.376	1.00
151_T	154_I	1.375	1.00
305_D	308_I	1.369	1.00
289_V	292_I	1.368	1.00
308_I	311_G	1.366	1.00
233_Q	371_K	1.362	1.00
336_R	343_G	1.361	1.00
287_A	290_S	1.357	1.00
16_A	28_V	1.341	1.00
71_R	74_P	1.339	1.00
300_A	303_R	1.335	1.00
308_I	314_A	1.332	1.00
286_G	289_V	1.330	1.00
210_M	214_A	1.328	1.00
118_C	121_A	1.321	1.00
308_I	312_G	1.314	1.00
11_V	252_A	1.310	1.00
165_Q	171_R	1.310	1.00
296_T	300_A	1.309	1.00
287_A	291_T	1.304	1.00
309_R	315_E	1.303	1.00
376_N	394_L	1.302	1.00
392_Q	396_D	1.302	1.00
310_V	315_E	1.293	1.00
275_Y	278_T	1.290	1.00
306_N	309_R	1.288	1.00
236_G	249_Y	1.283	1.00
311_G	316_I	1.281	1.00
62_L	73_A	1.280	1.00
79_L	194_N	1.273	1.00
309_R	313_M	1.267	1.00
22_A	401_R	1.266	1.00
70_Q	213_Q	1.260	1.00
163_P	194_N	1.260	1.00
311_G	315_E	1.251	1.00
312_G	315_E	1.245	1.00
313_M	316_I	1.242	1.00
296_T	302_T	1.233	1.00
277_L	282_A	1.229	1.00
17_W	214_A	1.228	1.00
299_I	302_T	1.227	1.00
305_D	309_R	1.223	1.00
210_M	213_Q	1.221	1.00
276_S	282_A	1.221	1.00
208_A	220_F	1.215	1.00
202_L	206_N	1.209	1.00
333_M	343_G	1.204	1.00
298_K	301_I	1.202	1.00
212_E	217_K	1.194	1.00
87_K	91_Q	1.194	1.00
274_G	279_I	1.193	1.00
271_P	275_Y	1.190	1.00
230_D	245_K	1.190	1.00
297_Y	304_F	1.187	1.00
299_I	304_F	1.187	1.00
275_Y	279_I	1.186	1.00
209_R	213_Q	1.184	1.00
19_L	250_V	1.181	1.00
308_I	313_M	1.179	1.00
250_V	398_L	1.173	1.00
234_I	249_Y	1.171	1.00
274_G	277_L	1.169	1.00
307_R	311_G	1.160	1.00
143_T	146_Q	1.157	1.00
155_A	158_E	1.154	1.00
100_H	103_E	1.154	1.00
155_A	159_D	1.153	1.00
305_D	310_V	1.150	1.00
259_A	262_K	1.150	1.00
310_V	316_I	1.146	1.00
363_P	366_G	1.144	1.00
158_E	161_G	1.143	1.00
295_E	299_I	1.142	1.00
18_Y	22_A	1.141	1.00
225_D	241_D	1.139	1.00
328_R	349_T	1.137	1.00
261_L	264_I	1.135	1.00
249_Y	372_N	1.133	1.00
277_L	281_I	1.132	1.00
18_Y	392_Q	1.130	1.00
234_I	372_N	1.116	1.00
312_G	317_V	1.116	1.00
41_A	201_Q	1.113	1.00
75_L	213_Q	1.112	1.00
275_Y	280_P	1.112	1.00
295_E	301_I	1.103	1.00
15_S	376_N	1.100	1.00
228_L	235_Y	1.094	1.00
62_L	72_H	1.064	1.00
70_Q	75_L	1.059	1.00
273_K	277_L	1.058	1.00
309_R	316_I	1.054	1.00
206_N	209_R	1.052	1.00
248_A	374_W	1.052	1.00
306_N	314_A	1.051	1.00
288_P	291_T	1.050	1.00
296_T	301_I	1.049	1.00
98_T	102_M	1.047	1.00
276_S	281_I	1.046	1.00
251_M	257_S	1.041	1.00
108_M	112_A	1.039	1.00
29_I	237_V	1.034	1.00
227_L	237_V	1.034	1.00
14_A	388_C	1.031	1.00
248_A	398_L	1.029	1.00
8_S	30_D	1.022	1.00
169_S	173_A	1.022	1.00
357_M	363_P	1.021	1.00
20_N	25_E	1.021	1.00
274_G	281_I	1.020	1.00
96_C	101_Y	1.019	1.00
306_N	311_G	1.016	1.00
252_A	376_N	1.016	1.00
297_Y	303_R	1.016	1.00
258_T	262_K	1.012	1.00
298_K	304_F	1.002	1.00
251_M	261_L	1.001	1.00
135_G	139_Q	0.994	1.00
308_I	316_I	0.990	1.00
296_T	304_F	0.989	1.00
27_T	247_D	0.987	1.00
286_G	292_I	0.986	1.00
222_T	241_D	0.982	1.00
101_Y	104_N	0.979	1.00
306_N	312_G	0.979	1.00
35_A	218_F	0.977	1.00
103_E	107_R	0.965	1.00
274_G	278_T	0.963	1.00
275_Y	283_Q	0.959	1.00
92_M	95_N	0.948	1.00
319_F	322_E	0.943	1.00
276_S	280_P	0.938	1.00
97_D	108_M	0.935	1.00
314_A	317_V	0.931	1.00
153_D	158_E	0.925	1.00
277_L	283_Q	0.924	1.00
295_E	300_A	0.922	1.00
151_T	161_G	0.922	1.00
273_K	278_T	0.920	1.00
171_R	174_E	0.915	1.00
112_A	115_S	0.914	1.00
270_Y	275_Y	0.914	1.00
265_V	375_L	0.913	1.00
288_P	292_I	0.911	1.00
100_H	104_N	0.910	1.00
299_I	303_R	0.908	1.00
308_I	317_V	0.904	1.00
13_V	28_V	0.900	0.99
351_W	356_P	0.898	0.99
309_R	317_V	0.895	0.99
395_S	399_S	0.895	0.99
121_A	125_E	0.893	0.99
295_E	302_T	0.892	0.99
102_M	159_D	0.890	0.99
30_D	220_F	0.889	0.99
342_G	345_V	0.888	0.99
106_G	110_R	0.886	0.99
102_M	106_G	0.882	0.99
165_Q	193_P	0.877	0.99
370_F	373_L	0.873	0.99
313_M	317_V	0.868	0.99
279_I	282_A	0.867	0.99
101_Y	105_K	0.867	0.99
225_D	239_C	0.866	0.99
47_I	347_Q	0.865	0.99
103_E	106_G	0.865	0.99
229_C	234_I	0.860	0.99
306_N	310_V	0.859	0.99
341_R	344_H	0.853	0.99
229_C	232_E	0.850	0.99
360_D	363_P	0.849	0.99
307_R	313_M	0.849	0.99
361_G	367_R	0.848	0.99
274_G	282_A	0.842	0.99
352_T	356_P	0.841	0.99
288_P	293_L	0.840	0.99
88_W	91_Q	0.839	0.99
151_T	159_D	0.838	0.99
274_G	280_P	0.838	0.99
17_W	210_M	0.837	0.99
152_R	155_A	0.833	0.99
358_T	364_V	0.832	0.99
307_R	314_A	0.831	0.99
334_V	338_L	0.824	0.99
34_G	37_L	0.823	0.99
153_D	156_V	0.822	0.99
358_T	361_G	0.821	0.99
280_P	283_Q	0.821	0.99
13_V	204_T	0.818	0.99
225_D	228_L	0.817	0.99
272_L	278_T	0.816	0.99
270_Y	274_G	0.810	0.99
310_V	317_V	0.809	0.99
276_S	279_I	0.808	0.99
137_T	141_F	0.808	0.99
300_A	304_F	0.807	0.99
151_T	155_A	0.806	0.99
28_V	35_A	0.803	0.99
157_L	161_G	0.802	0.99
341_R	345_V	0.802	0.99
156_V	161_G	0.801	0.99
112_A	122_L	0.800	0.99
205_Q	209_R	0.798	0.99
80_D	83_Q	0.797	0.99
361_G	366_G	0.797	0.99
29_I	224_V	0.793	0.99
273_K	281_I	0.791	0.99
145_Q	148_E	0.791	0.99
115_S	118_C	0.789	0.99
229_C	235_Y	0.789	0.99
269_V	272_L	0.789	0.99
298_K	303_R	0.786	0.99
295_E	303_R	0.786	0.99
116_R	120_K	0.785	0.99
307_R	315_E	0.780	0.99
24_H	247_D	0.777	0.98
167_L	171_R	0.777	0.98
132_G	139_Q	0.775	0.98
261_L	265_V	0.773	0.98
308_I	315_E	0.772	0.98
290_S	293_L	0.772	0.98
382_L	385_T	0.770	0.98
13_V	211_A	0.768	0.98
133_R	136_G	0.767	0.98
29_I	222_T	0.767	0.98
117_D	121_A	0.766	0.98
153_D	160_A	0.766	0.98
311_G	317_V	0.765	0.98
233_Q	236_G	0.764	0.98
271_P	276_S	0.764	0.98
327_R	331_L	0.762	0.98
272_L	277_L	0.761	0.98
333_M	336_R	0.760	0.98
271_P	274_G	0.758	0.98
307_R	310_V	0.755	0.98
97_D	101_Y	0.754	0.98
305_D	313_M	0.754	0.98
154_I	157_L	0.753	0.98
151_T	156_V	0.752	0.98
333_M	337_D	0.750	0.98
165_Q	191_Q	0.749	0.98
152_R	161_G	0.748	0.98
135_G	140_L	0.747	0.98
251_M	373_L	0.746	0.98
334_V	337_D	0.746	0.98
133_R	137_T	0.746	0.98
34_G	220_F	0.744	0.98
133_R	139_Q	0.743	0.98
395_S	398_L	0.742	0.98
70_Q	73_A	0.741	0.98
379_H	390_S	0.741	0.98
365_V	369_R	0.738	0.98
5_I	16_A	0.736	0.98
104_N	108_M	0.736	0.98
306_N	313_M	0.735	0.98
235_Y	245_K	0.734	0.98
274_G	283_Q	0.732	0.98
97_D	104_N	0.725	0.98
17_W	68_M	0.724	0.98
6_L	251_M	0.723	0.98
32_E	37_L	0.722	0.98
357_M	361_G	0.721	0.98
291_T	294_D	0.719	0.98
222_T	244_I	0.719	0.98
95_N	104_N	0.718	0.97
329_E	343_G	0.717	0.97
319_F	323_L	0.715	0.97
327_R	330_T	0.714	0.97
272_L	279_I	0.714	0.97
105_K	120_K	0.713	0.97
62_L	66_K	0.713	0.97
101_Y	108_M	0.713	0.97
35_A	205_Q	0.707	0.97
227_L	249_Y	0.706	0.97
290_S	294_D	0.706	0.97
228_L	245_K	0.705	0.97
153_D	157_L	0.702	0.97
278_T	281_I	0.699	0.97
361_G	365_V	0.697	0.97
6_L	224_V	0.695	0.97
233_Q	372_N	0.694	0.97
144_E	147_Y	0.694	0.97
307_R	312_G	0.693	0.97
272_L	282_A	0.693	0.97
90_W	94_R	0.692	0.97
362_T	365_V	0.689	0.97
230_D	233_Q	0.688	0.97
104_N	107_R	0.687	0.97
108_M	115_S	0.687	0.97
259_A	263_G	0.684	0.97
14_A	18_Y	0.683	0.97
126_T	129_Q	0.680	0.97
359_P	365_V	0.678	0.96
132_G	136_G	0.678	0.96
153_D	161_G	0.678	0.96
24_H	27_T	0.677	0.96
10_V	387_A	0.676	0.96
310_V	335_V	0.674	0.96
120_K	134_Q	0.673	0.96
358_T	366_G	0.672	0.96
393_L	396_D	0.672	0.96
82_T	87_K	0.672	0.96
306_N	315_E	0.670	0.96
136_G	139_Q	0.669	0.96
286_G	291_T	0.669	0.96
63_K	392_Q	0.668	0.96
64_A	67_W	0.668	0.96
145_Q	149_N	0.660	0.96
146_Q	296_T	0.659	0.96
147_Y	166_L	0.659	0.96
137_T	140_L	0.656	0.96
286_G	290_S	0.655	0.96
24_H	248_A	0.653	0.96
289_V	293_L	0.652	0.96
365_V	368_T	0.650	0.95
374_W	401_R	0.649	0.95
233_Q	245_K	0.648	0.95
343_G	346_E	0.647	0.95
17_W	207_L	0.643	0.95
296_T	303_R	0.643	0.95
307_R	316_I	0.642	0.95
332_E	336_R	0.642	0.95
346_E	349_T	0.642	0.95
154_I	159_D	0.642	0.95
237_V	249_Y	0.642	0.95
332_E	346_E	0.642	0.95
305_D	315_E	0.641	0.95
302_T	305_D	0.641	0.95
272_L	280_P	0.640	0.95
30_D	34_G	0.640	0.95
95_N	98_T	0.637	0.95
157_L	160_A	0.636	0.95
295_E	304_F	0.634	0.95
142_R	146_Q	0.634	0.95
361_G	368_T	0.634	0.95
151_T	160_A	0.634	0.95
10_V	207_L	0.633	0.95
146_Q	149_N	0.633	0.95
11_V	376_N	0.631	0.95
115_S	119_L	0.629	0.95
305_D	311_G	0.629	0.95
247_D	372_N	0.628	0.95
158_E	163_P	0.628	0.95
114_Y	118_C	0.627	0.95
305_D	312_G	0.626	0.94
269_V	275_Y	0.625	0.94
376_N	391_G	0.625	0.94
132_G	137_T	0.624	0.94
305_D	316_I	0.624	0.94
379_H	382_L	0.622	0.94
232_E	370_F	0.622	0.94
357_M	368_T	0.621	0.94
132_G	140_L	0.621	0.94
261_L	373_L	0.620	0.94
108_M	119_L	0.619	0.94
205_Q	212_E	0.618	0.94
23_G	26_V	0.617	0.94
335_V	338_L	0.616	0.94
17_W	211_A	0.616	0.94
92_M	108_M	0.614	0.94
61_P	65_I	0.613	0.94
355_R	359_P	0.612	0.94
203_F	384_W	0.609	0.94
320_N	323_L	0.608	0.94
4_V	27_T	0.608	0.94
60_V	63_K	0.607	0.94
229_C	236_G	0.607	0.94
239_C	243_V	0.605	0.93
234_I	373_L	0.603	0.93
305_D	314_A	0.603	0.93
115_S	122_L	0.603	0.93
269_V	274_G	0.602	0.93
268_P	271_P	0.601	0.93
344_H	347_Q	0.598	0.93
136_G	141_F	0.595	0.93
354_L	357_M	0.594	0.93
304_F	309_R	0.593	0.93
330_T	333_M	0.593	0.93
78_R	81_G	0.591	0.93
278_T	282_A	0.591	0.93
363_P	368_T	0.591	0.93
112_A	116_R	0.589	0.93
108_M	122_L	0.586	0.92
250_V	394_L	0.585	0.92
63_K	67_W	0.584	0.92
212_E	220_F	0.584	0.92
98_T	105_K	0.584	0.92
5_I	250_V	0.584	0.92
126_T	130_Y	0.584	0.92
167_L	172_L	0.583	0.92
367_R	372_N	0.582	0.92
293_L	301_I	0.582	0.92
364_V	367_R	0.581	0.92
272_L	281_I	0.581	0.92
141_F	147_Y	0.581	0.92
358_T	365_V	0.581	0.92
328_R	332_E	0.581	0.92
92_M	100_H	0.580	0.92
31_R	362_T	0.580	0.92
22_A	395_S	0.578	0.92
266_D	269_V	0.578	0.92
111_L	114_Y	0.577	0.92
236_G	245_K	0.576	0.92
222_T	242_E	0.576	0.92
167_L	175_V	0.575	0.92
173_A	180_A	0.573	0.91
368_T	375_L	0.572	0.91
176_E	179_L	0.571	0.91
349_T	354_L	0.569	0.91
128_I	131_E	0.569	0.91
358_T	363_P	0.568	0.91
120_K	196_E	0.568	0.91
94_R	97_D	0.568	0.91
287_A	293_L	0.568	0.91
17_W	21_Q	0.567	0.91
143_T	148_E	0.567	0.91
350_F	354_L	0.563	0.91
8_S	220_F	0.563	0.91
387_A	391_G	0.562	0.91
166_L	169_S	0.562	0.91
46_Q	49_P	0.562	0.91
360_D	365_V	0.562	0.91
14_A	391_G	0.561	0.91
267_I	270_Y	0.561	0.91
109_V	113_E	0.559	0.90
268_P	274_G	0.559	0.90
143_T	150_A	0.556	0.90
88_W	276_S	0.555	0.90
266_D	345_V	0.555	0.90
374_W	397_L	0.553	0.90
111_L	115_S	0.551	0.90
86_L	96_C	0.551	0.90
16_A	216_V	0.550	0.90
121_A	124_A	0.550	0.90
91_Q	94_R	0.549	0.90
225_D	229_C	0.549	0.90
245_K	249_Y	0.547	0.90
325_Q	328_R	0.543	0.89
323_L	326_P	0.540	0.89
156_V	160_A	0.540	0.89
154_I	161_G	0.539	0.89
111_L	122_L	0.538	0.89
133_R	141_F	0.537	0.89
113_E	122_L	0.535	0.88
43_N	46_Q	0.535	0.88
364_V	368_T	0.534	0.88
92_M	96_C	0.534	0.88
101_Y	112_A	0.533	0.88
352_T	355_R	0.533	0.88
276_S	283_Q	0.532	0.88
268_P	279_I	0.532	0.88
18_Y	21_Q	0.532	0.88
32_E	38_E	0.531	0.88
346_E	353_G	0.531	0.88
114_Y	117_D	0.530	0.88
302_T	307_R	0.529	0.88
348_A	356_P	0.526	0.88
113_E	116_R	0.525	0.88
272_L	357_M	0.525	0.88
342_G	346_E	0.524	0.87
268_P	275_Y	0.524	0.87
136_G	140_L	0.524	0.87
348_A	351_W	0.523	0.87
104_N	112_A	0.522	0.87
4_V	245_K	0.522	0.87
363_P	367_R	0.521	0.87
169_S	172_L	0.519	0.87
155_A	160_A	0.519	0.87
4_V	249_Y	0.519	0.87
269_V	377_T	0.518	0.87
362_T	366_G	0.517	0.87
151_T	157_L	0.517	0.87
107_R	112_A	0.514	0.86
37_L	205_Q	0.513	0.86
135_G	144_E	0.513	0.86
271_P	277_L	0.511	0.86
44_A	350_F	0.510	0.86
165_Q	175_V	0.510	0.86
352_T	360_D	0.509	0.86
19_L	398_L	0.509	0.86
269_V	280_P	0.506	0.86
130_Y	133_R	0.506	0.86
31_R	38_E	0.506	0.86
267_I	345_V	0.505	0.85
46_Q	50_G	0.504	0.85
226_Q	229_C	0.502	0.85
9_G	12_G	0.502	0.85
4_V	224_V	0.501	0.85
117_D	120_K	0.501	0.85
146_Q	150_A	0.500	0.85
64_A	68_M	0.500	0.85

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4h1bA	1	0.831	100	0.404	Contact Map
1y56B	1	0.8403	100	0.428	Contact Map
3axbA	2	0.8449	100	0.428	Contact Map
2gagB	1	0.8657	100	0.43	Contact Map
3pvcA	1	0.8356	100	0.441	Contact Map
3ps9A	1	0.8333	100	0.442	Contact Map
4x9mA	1	0.838	100	0.444	Contact Map
1ryiA	4	0.8171	100	0.445	Contact Map
4rslA	1	0.8472	100	0.453	Contact Map
1pj5A	3	0.8634	100	0.457	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0182 seconds.