AROA - ECOLI - GREMLIN Contacts

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AROA - 3-phosphoshikimate 1-carboxyvinyltransferase

UniProt:	P0A6D3	Sequences: MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10073
Length:	427 (395)
Sequences:	7930 (4906)
Seq/√Len:	246.8

ECOLI - AROA MURA
BACSU - AROA MURA1 MURA2
HALSA - AROA
SULSO - AROA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
259_T	295_S	4.344	1.00
15_T	263_T	4.068	1.00
358_E	369_T	3.736	1.00
42_T	236_T	3.419	1.00
261_K	295_S	3.393	1.00
259_T	297_T	3.375	1.00
161_N	190_R	3.217	1.00
186_D	226_K	3.163	1.00
415_D	418_E	3.053	1.00
214_E	226_K	2.806	1.00
36_H	230_S	2.762	1.00
42_T	238_L	2.746	1.00
17_N	263_T	2.735	1.00
380_A	404_L	2.696	1.00
38_K	76_I	2.694	1.00
413_F	419_Q	2.656	1.00
254_A	285_A	2.649	1.00
208_M	213_V	2.611	1.00
116_T	122_K	2.608	1.00
328_T	369_T	2.581	1.00
286_T	297_T	2.569	1.00
40_V	236_T	2.542	1.00
163_D	190_R	2.500	1.00
351_E	354_K	2.445	1.00
255_I	393_L	2.425	1.00
300_E	326_K	2.401	1.00
378_E	404_L	2.375	1.00
46_D	51_R	2.374	1.00
161_N	188_V	2.349	1.00
260_V	423_I	2.337	1.00
42_T	72_R	2.335	1.00
55_N	58_T	2.303	1.00
251_A	321_A	2.280	1.00
290_G	293_Y	2.212	1.00
65_T	74_E	2.184	1.00
378_E	402_T	2.163	1.00
40_V	72_R	2.157	1.00
40_V	74_E	2.132	1.00
38_K	74_E	2.121	1.00
169_S	172_F	2.112	1.00
132_A	176_L	2.111	1.00
395_A	401_V	2.099	1.00
156_G	184_P	2.088	1.00
362_G	365_Y	2.081	1.00
46_D	66_L	2.022	1.00
373_K	398_D	1.978	1.00
177_L	205_L	1.975	1.00
186_D	224_V	1.970	1.00
139_K	154_Q	1.945	1.00
305_D	332_R	1.936	1.00
351_E	391_F	1.930	1.00
13_D	259_T	1.928	1.00
330_T	367_R	1.911	1.00
32_A	39_T	1.847	1.00
63_S	76_I	1.811	1.00
127_G	131_D	1.763	1.00
352_L	357_A	1.746	1.00
30_L	53_M	1.733	1.00
261_K	290_G	1.711	1.00
288_C	295_S	1.707	1.00
320_T	390_C	1.668	1.00
188_V	224_V	1.652	1.00
302_N	326_K	1.643	1.00
360_E	369_T	1.634	1.00
357_A	374_L	1.631	1.00
360_E	367_R	1.628	1.00
159_G	183_A	1.628	1.00
25_S	44_L	1.626	1.00
56_A	90_L	1.624	1.00
355_V	401_V	1.624	1.00
213_V	231_Y	1.621	1.00
54_L	73_C	1.621	1.00
131_D	135_L	1.618	1.00
104_A	175_A	1.616	1.00
328_T	367_R	1.607	1.00
67_S	74_E	1.588	1.00
247_S	314_A	1.577	1.00
141_T	152_R	1.564	1.00
190_R	222_Q	1.554	1.00
28_A	207_L	1.542	1.00
54_L	64_Y	1.540	1.00
110_S	152_R	1.517	1.00
290_G	295_S	1.512	1.00
158_T	184_P	1.503	1.00
355_V	377_A	1.493	1.00
305_D	330_T	1.488	1.00
216_E	226_K	1.487	1.00
29_L	57_L	1.476	1.00
66_L	73_C	1.475	1.00
188_V	222_Q	1.474	1.00
261_K	293_Y	1.467	1.00
250_L	277_A	1.463	1.00
319_A	348_M	1.459	1.00
209_K	218_Q	1.449	1.00
392_S	416_Y	1.449	1.00
379_I	391_F	1.430	1.00
349_A	359_V	1.409	1.00
112_D	150_P	1.409	1.00
218_Q	223_F	1.372	1.00
349_A	361_E	1.361	1.00
58_T	64_Y	1.354	1.00
120_R	123_E	1.353	1.00
323_L	357_A	1.353	1.00
15_T	261_K	1.342	1.00
303_A	328_T	1.338	1.00
278_D	281_E	1.330	1.00
99_M	149_P	1.329	1.00
419_Q	422_R	1.327	1.00
355_V	394_V	1.326	1.00
327_G	370_P	1.318	1.00
322_A	329_T	1.316	1.00
211_F	235_G	1.304	1.00
240_E	269_S	1.303	1.00
349_A	366_I	1.301	1.00
319_A	331_L	1.295	1.00
252_A	396_L	1.294	1.00
303_A	329_T	1.285	1.00
250_L	262_V	1.283	1.00
100_R	174_T	1.280	1.00
246_A	265_I	1.274	1.00
51_R	66_L	1.273	1.00
251_A	276_F	1.273	1.00
203_I	237_Y	1.269	1.00
130_V	142_Y	1.266	1.00
16_I	423_I	1.265	1.00
209_K	214_E	1.264	1.00
44_L	50_V	1.261	1.00
89_E	114_V	1.261	1.00
18_L	262_V	1.257	1.00
280_L	285_A	1.254	1.00
112_D	152_R	1.249	1.00
283_M	304_I	1.248	1.00
138_A	157_F	1.243	1.00
210_T	235_G	1.241	1.00
205_L	215_I	1.241	1.00
29_L	54_L	1.240	1.00
362_G	367_R	1.239	1.00
35_A	39_T	1.235	1.00
37_G	233_S	1.234	1.00
380_A	405_D	1.228	1.00
62_V	75_I	1.226	1.00
55_N	59_A	1.224	1.00
41_L	239_V	1.221	1.00
140_I	151_L	1.216	1.00
216_E	224_V	1.211	1.00
250_L	280_L	1.210	1.00
288_C	297_T	1.206	1.00
17_N	264_G	1.205	1.00
65_T	76_I	1.200	1.00
25_S	50_V	1.190	1.00
184_P	229_Q	1.189	1.00
177_L	225_V	1.189	1.00
202_D	206_N	1.186	1.00
67_S	72_R	1.176	1.00
198_K	201_I	1.175	1.00
112_D	154_Q	1.166	1.00
134_R	139_K	1.164	1.00
324_F	371_P	1.159	1.00
307_D	333_N	1.152	1.00
28_A	239_V	1.151	1.00
388_A	409_T	1.148	1.00
141_T	154_Q	1.144	1.00
308_M	333_N	1.143	1.00
250_L	296_C	1.142	1.00
39_T	207_L	1.131	1.00
395_A	403_I	1.130	1.00
95_A	98_A	1.129	1.00
249_F	413_F	1.129	1.00
189_I	195_L	1.129	1.00
415_D	419_Q	1.125	1.00
32_A	75_I	1.113	1.00
252_A	393_L	1.108	1.00
26_N	53_M	1.107	1.00
388_A	408_C	1.094	1.00
136_G	160_G	1.093	1.00
320_T	394_V	1.092	1.00
37_G	232_Q	1.088	1.00
58_T	63_S	1.088	1.00
280_L	321_A	1.086	1.00
279_V	318_I	1.085	1.00
180_A	187_T	1.084	1.00
267_R	289_W	1.077	1.00
359_V	366_I	1.067	1.00
139_K	152_R	1.060	1.00
131_D	134_R	1.052	1.00
379_I	401_V	1.050	1.00
52_H	55_N	1.039	1.00
162_V	165_D	1.036	1.00
41_L	75_I	1.034	1.00
254_A	299_G	1.025	1.00
418_E	421_A	1.024	1.00
283_M	325_A	1.023	1.00
197_S	221_Q	1.023	1.00
266_G	269_S	1.022	1.00
248_Y	389_M	1.020	1.00
35_A	233_S	1.012	1.00
130_V	134_R	1.009	1.00
56_A	92_L	1.008	1.00
52_H	93_G	1.005	1.00
157_F	183_A	0.995	1.00
185_E	227_G	0.993	1.00
247_S	317_T	0.989	1.00
12_V	252_A	0.988	1.00
174_T	204_T	0.986	1.00
58_T	66_L	0.978	1.00
39_T	235_G	0.975	1.00
279_V	306_M	0.968	1.00
281_E	289_W	0.965	1.00
57_L	62_V	0.962	1.00
328_T	370_P	0.961	1.00
164_V	176_L	0.958	1.00
205_L	218_Q	0.957	1.00
110_S	150_P	0.954	1.00
208_M	231_Y	0.953	1.00
279_V	282_K	0.951	1.00
251_A	314_A	0.951	1.00
322_A	331_L	0.950	1.00
251_A	280_L	0.948	1.00
62_V	77_G	0.947	1.00
28_A	41_L	0.947	1.00
375_N	398_D	0.943	1.00
89_E	116_T	0.941	1.00
281_E	286_T	0.938	1.00
245_S	419_Q	0.934	1.00
142_Y	147_N	0.933	1.00
353_R	358_E	0.932	1.00
354_K	377_A	0.926	1.00
87_A	90_L	0.925	1.00
257_G	298_R	0.923	1.00
181_P	231_Y	0.920	1.00
335_Y	363_H	0.919	1.00
243_A	276_F	0.918	1.00
383_N	405_D	0.916	1.00
377_A	401_V	0.908	1.00
331_L	366_I	0.907	1.00
275_R	278_D	0.906	1.00
68_A	72_R	0.905	1.00
141_T	145_Q	0.903	1.00
314_A	317_T	0.901	1.00
283_M	301_L	0.900	1.00
324_F	372_E	0.898	1.00
44_L	73_C	0.896	1.00
27_R	30_L	0.895	1.00
238_L	264_G	0.894	1.00
128_H	166_G	0.893	1.00
48_D	410_A	0.887	1.00
348_M	387_M	0.884	1.00
405_D	408_C	0.883	1.00
43_N	238_L	0.873	0.99
237_Y	240_E	0.873	0.99
14_G	423_I	0.871	0.99
200_Y	243_A	0.870	0.99
114_V	152_R	0.867	0.99
253_A	256_K	0.864	0.99
54_L	58_T	0.863	0.99
303_A	327_G	0.862	0.99
129_L	175_A	0.851	0.99
131_D	165_D	0.851	0.99
12_V	258_G	0.850	0.99
303_A	325_A	0.849	0.99
37_G	77_G	0.848	0.99
381_T	388_A	0.845	0.99
34_L	105_A	0.840	0.99
119_P	385_H	0.839	0.99
323_L	352_L	0.839	0.99
106_L	138_A	0.839	0.99
181_P	213_V	0.835	0.99
319_A	366_I	0.832	0.99
218_Q	222_Q	0.828	0.99
30_L	105_A	0.828	0.99
217_N	220_Y	0.824	0.99
334_I	365_Y	0.822	0.99
104_A	178_M	0.821	0.99
121_M	336_N	0.820	0.99
209_K	215_I	0.818	0.99
153_L	156_G	0.816	0.99
92_L	121_M	0.815	0.99
209_K	217_N	0.814	0.99
206_N	210_T	0.814	0.99
207_L	211_F	0.813	0.99
186_D	227_G	0.813	0.99
325_A	329_T	0.812	0.99
319_A	368_I	0.812	0.99
301_L	325_A	0.811	0.99
407_K	410_A	0.806	0.99
18_L	246_A	0.805	0.99
250_L	253_A	0.805	0.99
130_V	140_I	0.803	0.99
206_N	209_K	0.800	0.99
275_R	311_I	0.798	0.99
59_A	87_A	0.796	0.99
165_D	279_V	0.796	0.99
255_I	324_F	0.793	0.99
210_T	237_Y	0.791	0.99
38_K	77_G	0.790	0.99
54_L	66_L	0.790	0.99
36_H	232_Q	0.789	0.99
16_I	262_V	0.781	0.99
33_A	57_L	0.780	0.99
255_I	320_T	0.776	0.99
142_Y	146_E	0.776	0.99
25_S	239_V	0.776	0.99
183_A	187_T	0.775	0.99
58_T	65_T	0.775	0.99
103_A	153_L	0.770	0.99
18_L	249_F	0.770	0.99
207_L	235_G	0.770	0.99
99_M	126_I	0.767	0.99
159_G	187_T	0.766	0.99
48_D	52_H	0.766	0.99
159_G	184_P	0.766	0.99
395_A	420_L	0.764	0.99
119_P	123_E	0.762	0.99
254_A	296_C	0.760	0.99
180_A	189_I	0.758	0.99
283_M	321_A	0.750	0.98
24_V	207_L	0.750	0.98
397_S	401_V	0.749	0.98
19_P	419_Q	0.749	0.98
289_W	294_I	0.748	0.98
392_S	409_T	0.745	0.98
317_T	393_L	0.745	0.98
43_N	264_G	0.742	0.98
128_H	165_D	0.742	0.98
21_S	25_S	0.737	0.98
406_P	409_T	0.736	0.98
285_A	301_L	0.735	0.98
19_P	245_S	0.733	0.98
361_E	365_Y	0.730	0.98
357_A	372_E	0.729	0.98
250_L	254_A	0.728	0.98
136_G	162_V	0.727	0.98
254_A	280_L	0.726	0.98
289_W	293_Y	0.724	0.98
253_A	260_V	0.723	0.98
283_M	322_A	0.721	0.98
17_N	43_N	0.720	0.98
32_A	77_G	0.719	0.98
381_T	403_I	0.719	0.98
209_K	216_E	0.718	0.98
329_T	368_I	0.717	0.98
287_I	296_C	0.717	0.98
410_A	417_F	0.715	0.98
89_E	122_K	0.715	0.98
332_R	362_G	0.714	0.98
249_F	419_Q	0.712	0.98
316_M	387_M	0.712	0.98
323_L	371_P	0.711	0.98
304_I	329_T	0.709	0.98
24_V	203_I	0.708	0.98
332_R	365_Y	0.706	0.98
84_A	112_D	0.705	0.98
107_C	138_A	0.705	0.98
246_A	262_V	0.704	0.98
308_M	315_A	0.701	0.98
179_T	183_A	0.700	0.98
277_A	281_E	0.698	0.98
31_L	207_L	0.698	0.98
376_F	401_V	0.697	0.98
177_L	223_F	0.695	0.97
203_I	206_N	0.691	0.97
276_F	314_A	0.691	0.97
355_V	379_I	0.690	0.97
211_F	231_Y	0.690	0.97
133_L	138_A	0.688	0.97
252_A	420_L	0.687	0.97
88_L	122_K	0.684	0.97
232_Q	235_G	0.683	0.97
277_A	289_W	0.682	0.97
86_G	89_E	0.680	0.97
176_L	189_I	0.679	0.97
98_A	411_K	0.678	0.97
92_L	115_L	0.677	0.97
20_G	239_V	0.676	0.97
396_L	420_L	0.676	0.97
198_K	202_D	0.673	0.97
106_L	113_I	0.673	0.97
254_A	301_L	0.673	0.97
12_V	260_V	0.672	0.97
162_V	189_I	0.672	0.97
196_V	200_Y	0.672	0.97
202_D	217_N	0.670	0.97
103_A	115_L	0.668	0.97
57_L	102_L	0.668	0.97
248_Y	317_T	0.663	0.97
57_L	64_Y	0.662	0.97
121_M	149_P	0.660	0.97
103_A	129_L	0.659	0.97
11_R	258_G	0.658	0.96
253_A	258_G	0.657	0.96
29_L	75_I	0.657	0.96
171_Q	201_I	0.656	0.96
136_G	187_T	0.655	0.96
159_G	185_E	0.654	0.96
307_D	332_R	0.653	0.96
214_E	228_G	0.650	0.96
197_S	201_I	0.650	0.96
25_S	45_L	0.648	0.96
29_L	73_C	0.647	0.96
257_G	299_G	0.646	0.96
24_V	27_R	0.644	0.96
355_V	397_S	0.642	0.96
100_R	171_Q	0.641	0.96
166_G	334_I	0.640	0.96
320_T	391_F	0.639	0.96
157_F	185_E	0.638	0.96
102_L	133_L	0.636	0.96
267_R	294_I	0.636	0.96
115_L	149_P	0.636	0.96
99_M	115_L	0.635	0.96
164_V	189_I	0.633	0.96
281_E	287_I	0.631	0.96
249_F	416_Y	0.630	0.96
36_H	77_G	0.629	0.95
285_A	296_C	0.628	0.95
69_D	72_R	0.628	0.95
206_N	237_Y	0.627	0.95
38_K	233_S	0.626	0.95
28_A	237_Y	0.626	0.95
241_G	262_V	0.626	0.95
316_M	348_M	0.625	0.95
417_F	421_A	0.625	0.95
77_G	80_G	0.624	0.95
253_A	262_V	0.623	0.95
139_K	156_G	0.622	0.95
16_I	419_Q	0.621	0.95
217_N	221_Q	0.620	0.95
124_R	386_R	0.619	0.95
106_L	115_L	0.619	0.95
308_M	311_I	0.617	0.95
187_T	227_G	0.615	0.95
62_V	78_N	0.614	0.95
33_A	62_V	0.614	0.95
247_S	276_F	0.614	0.95
265_I	294_I	0.612	0.95
92_L	98_A	0.608	0.95
217_N	223_F	0.607	0.95
338_R	361_E	0.606	0.94
251_A	317_T	0.606	0.94
126_I	149_P	0.605	0.94
128_H	131_D	0.605	0.94
319_A	349_A	0.605	0.94
106_L	133_L	0.603	0.94
209_K	213_V	0.602	0.94
35_A	77_G	0.601	0.94
253_A	257_G	0.598	0.94
8_P	11_R	0.597	0.94
409_T	417_F	0.596	0.94
392_S	417_F	0.596	0.94
78_N	81_P	0.596	0.94
126_I	130_V	0.596	0.94
35_A	76_I	0.595	0.94
197_S	200_Y	0.594	0.94
26_N	30_L	0.593	0.94
354_K	380_A	0.593	0.94
388_A	417_F	0.593	0.94
66_L	69_D	0.591	0.94
92_L	99_M	0.591	0.94
78_N	82_L	0.588	0.94
277_A	287_I	0.588	0.94
27_R	100_R	0.587	0.93
226_K	229_Q	0.587	0.93
54_L	75_I	0.583	0.93
134_R	141_T	0.582	0.93
158_T	185_E	0.582	0.93
323_L	374_L	0.581	0.93
16_I	249_F	0.581	0.93
249_F	420_L	0.581	0.93
177_L	189_I	0.581	0.93
353_R	359_V	0.580	0.93
207_L	237_Y	0.580	0.93
358_E	372_E	0.579	0.93
56_A	102_L	0.579	0.93
134_R	140_I	0.579	0.93
376_F	398_D	0.579	0.93
348_M	391_F	0.576	0.93
348_M	390_C	0.576	0.93
330_T	362_G	0.575	0.93
320_T	323_L	0.574	0.93
255_I	321_A	0.573	0.93
104_A	107_C	0.573	0.93
127_G	147_N	0.573	0.93
357_A	394_V	0.572	0.93
214_E	229_Q	0.570	0.92
282_K	310_H	0.569	0.92
303_A	326_K	0.567	0.92
164_V	167_S	0.567	0.92
22_K	124_R	0.567	0.92
48_D	51_R	0.565	0.92
312_P	337_W	0.565	0.92
381_T	408_C	0.565	0.92
145_Q	150_P	0.564	0.92
134_R	146_E	0.564	0.92
51_R	55_N	0.562	0.92
331_L	334_I	0.561	0.92
265_I	269_S	0.561	0.92
376_F	399_T	0.560	0.92
374_L	394_V	0.560	0.92
142_Y	151_L	0.556	0.92
203_I	240_E	0.553	0.91
60_L	106_L	0.553	0.91
132_A	136_G	0.552	0.91
355_V	374_L	0.551	0.91
308_M	318_I	0.550	0.91
171_Q	174_T	0.549	0.91
303_A	370_P	0.549	0.91
350_T	353_R	0.549	0.91
56_A	101_P	0.548	0.91
40_V	67_S	0.548	0.91
130_V	151_L	0.547	0.91
389_M	416_Y	0.547	0.91
383_N	408_C	0.546	0.91
205_L	223_F	0.546	0.91
406_P	417_F	0.545	0.91
286_T	299_G	0.544	0.91
286_T	289_W	0.540	0.90
129_L	132_A	0.540	0.90
45_L	245_S	0.540	0.90
94_N	118_E	0.540	0.90
287_I	294_I	0.539	0.90
46_D	68_A	0.539	0.90
348_M	351_E	0.538	0.90
377_A	399_T	0.537	0.90
323_L	372_E	0.537	0.90
263_T	293_Y	0.537	0.90
253_A	285_A	0.536	0.90
219_H	222_Q	0.535	0.90
319_A	359_V	0.535	0.90
196_V	336_N	0.534	0.90
350_T	380_A	0.533	0.90
39_T	233_S	0.533	0.90
265_I	293_Y	0.531	0.90
18_L	265_I	0.530	0.90
26_N	98_A	0.529	0.89
37_G	76_I	0.528	0.89
250_L	287_I	0.527	0.89
145_Q	148_Y	0.527	0.89
134_R	142_Y	0.527	0.89
279_V	304_I	0.526	0.89
330_T	365_Y	0.526	0.89
337_W	412_T	0.526	0.89
181_P	228_G	0.525	0.89
39_T	211_F	0.525	0.89
244_S	385_H	0.524	0.89
279_V	311_I	0.524	0.89
208_M	211_F	0.524	0.89
322_A	368_I	0.522	0.89
233_S	236_T	0.522	0.89
309_N	333_N	0.521	0.89
213_V	228_G	0.521	0.89
97_T	101_P	0.520	0.89
175_A	179_T	0.520	0.89
376_F	395_A	0.519	0.89
218_Q	224_V	0.519	0.89
283_M	329_T	0.518	0.88
86_G	90_L	0.517	0.88
326_K	371_P	0.517	0.88
256_K	298_R	0.516	0.88
353_R	357_A	0.516	0.88
418_E	422_R	0.516	0.88
46_D	69_D	0.516	0.88
354_K	391_F	0.516	0.88
37_G	235_G	0.515	0.88
80_G	108_L	0.515	0.88
26_N	412_T	0.514	0.88
213_V	233_S	0.513	0.88
67_S	73_C	0.512	0.88
53_M	100_R	0.511	0.88
30_L	57_L	0.511	0.88
243_A	277_A	0.511	0.88
202_D	220_Y	0.511	0.88
278_D	282_K	0.510	0.88
331_L	368_I	0.510	0.88
338_R	363_H	0.510	0.88
323_L	370_P	0.509	0.88
198_K	217_N	0.508	0.87
337_W	347_A	0.508	0.87
195_L	201_I	0.508	0.87
315_A	331_L	0.508	0.87
128_H	169_S	0.508	0.87
257_G	297_T	0.506	0.87
35_A	211_F	0.506	0.87
213_V	229_Q	0.505	0.87
29_L	53_M	0.503	0.87
355_V	399_T	0.502	0.87
21_S	240_E	0.501	0.87
206_N	218_Q	0.501	0.87
256_K	259_T	0.501	0.87
202_D	205_L	0.500	0.87
103_A	175_A	0.500	0.87
86_G	92_L	0.500	0.87
63_S	66_L	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rmtA	4	0.9696	100	0.099	Contact Map
2pqcA	1	0.9719	100	0.126	Contact Map
3nvsA	1	0.993	100	0.132	Contact Map
3slhA	4	0.9672	100	0.145	Contact Map
1rf6A	1	0.9649	100	0.159	Contact Map
2o0bA	1	0.9625	100	0.17	Contact Map
3zh4A	1	0.9321	100	0.238	Contact Map
4fqdA	2	0.9391	100	0.245	Contact Map
3r38A	2	0.9415	100	0.247	Contact Map
1ejdA	4	0.9461	100	0.267	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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