GREMLIN Database
GLTB - Glutamate synthase [NADPH] large chain
UniProt: P09831 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10403
Length: 1486 (1461)
Sequences: 2336 (1108)
Seq/√Len: 29.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
1435_V1443_G6.7741.00
578_L596_L6.6161.00
1158_R1161_D5.7931.00
1337_R1433_E5.4791.00
21_E367_K5.1531.00
63_D67_R5.1271.00
1021_I1065_I5.0801.00
653_T656_A4.9751.00
68_I206_R4.9381.00
305_V339_I4.8911.00
818_Y1139_Y4.8101.00
1080_I1147_T4.7851.00
59_L207_L4.7111.00
64_R208_E4.7031.00
578_L600_A4.7031.00
134_L198_F4.6991.00
1156_V1162_L4.6871.00
503_Y627_A4.6811.00
365_K384_E4.4381.00
847_D1157_T4.3281.00
815_Y819_A4.1951.00
1397_L1453_F4.1611.00
283_M304_L4.0931.00
99_R138_E4.0681.00
600_A611_L3.9661.00
1252_I1286_V3.9411.00
29_V209_S3.9101.00
321_A423_K3.8941.00
1220_Q1235_F3.8931.00
851_A1145_R3.8711.00
1021_I1067_L3.8411.00
1278_F1288_L3.8231.00
1339_Y1433_E3.7091.00
1376_C1427_L3.6631.00
807_V1099_A3.6401.00
619_A622_R3.5551.00
855_F883_I3.5471.00
910_V928_I3.4671.00
1006_V1023_I3.4021.00
1237_I1270_F3.3941.00
1069_V1082_A3.3851.00
27_K31_T3.3801.00
756_S759_D3.3711.00
590_E743_L3.3251.00
1362_I1366_G3.3251.00
738_D742_G3.2991.00
904_V926_D3.2891.00
475_L705_G3.2881.00
662_F706_I3.2301.00
837_T1170_K3.2201.00
694_D697_T3.2011.00
1417_V1427_L3.1921.00
66_F184_N3.1491.00
142_V179_L3.1411.00
906_R926_D3.1341.00
84_G179_L3.1321.00
19_H23_E3.1281.00
1151_M1162_L3.1281.00
111_L160_A3.1211.00
1123_K1126_K3.1141.00
993_K1254_Q3.1071.00
1374_I1426_H3.1021.00
370_T380_Y3.0901.00
1449_N1452_T3.0561.00
1160_V1200_Y3.0461.00
1090_F1163_I3.0291.00
405_R411_E3.0151.00
850_P853_E3.0131.00
1349_G1375_V3.0101.00
816_Q1149_E2.9971.00
835_A1170_K2.9951.00
576_D608_T2.9861.00
480_Q708_K2.9791.00
1157_T1161_D2.9781.00
601_E641_Q2.9741.00
1080_I1150_L2.9381.00
923_V1250_G2.9361.00
1225_V1256_H2.9001.00
668_F748_A2.8311.00
559_Y674_Y2.8281.00
1386_G1412_V2.8221.00
738_D753_G2.8191.00
875_A1100_L2.7991.00
118_D138_E2.7921.00
102_V164_I2.7891.00
106_L113_I2.7881.00
1269_Y1289_Y2.7881.00
581_T622_R2.7671.00
1156_V1168_L2.7551.00
605_R643_L2.7481.00
1282_N1286_V2.7471.00
579_D622_R2.7321.00
375_V1293_D2.7311.00
802_T817_E2.7161.00
1226_D1255_T2.7101.00
1423_H1459_L2.6921.00
1014_A1021_I2.6921.00
106_L160_A2.6901.00
595_E599_K2.6651.00
812_Y816_Q2.6551.00
317_P321_A2.6491.00
60_Q210_A2.6040.99
31_T368_L2.6020.99
468_L681_T2.5840.99
1251_Y1255_T2.5790.99
460_Q624_P2.5620.99
1397_L1456_K2.5620.99
820_K824_E2.5490.99
1267_K1289_Y2.5450.99
69_V72_E2.5330.99
928_I996_I2.5320.99
1366_G1385_F2.5220.99
1287_E1308_A2.5200.99
876_L1136_V2.5190.99
1318_R1321_E2.5110.99
1325_I1344_A2.5100.99
1249_S1283_A2.5080.99
1399_E1456_K2.4990.99
744_C757_F2.4960.99
1270_F1278_F2.4870.99
1291_T1310_R2.4710.99
697_T701_N2.4590.99
812_Y1149_E2.4560.99
149_R152_D2.4520.99
919_P1253_A2.4300.99
1234_W1269_Y2.4190.99
1218_L1247_S2.4190.99
1162_L1168_L2.4090.99
1084_I1162_L2.4070.99
663_A710_L2.4020.99
1159_L1163_I2.4000.99
1424_E1454_A2.3860.99
1417_V1454_A2.3540.99
1289_Y1310_R2.3530.99
1014_A1065_I2.3460.99
990_V1250_G2.3370.99
566_T577_T2.3330.99
287_L300_A2.3310.99
458_Q681_T2.3300.99
578_L611_L2.3180.99
985_F1212_L2.3140.99
883_I1137_T2.3110.99
1298_V1307_I2.3090.99
1151_M1159_L2.2970.99
851_A1141_E2.2880.99
819_A1146_E2.2860.99
500_R504_D2.2850.99
597_C633_A2.2780.99
1111_N1121_D2.2720.99
211_I401_T2.2670.99
836_I1154_L2.2670.99
517_P932_V2.2590.99
1150_L1153_Q2.2480.98
317_P423_K2.2450.98
1444_E1448_A2.2410.98
365_K1316_A2.2200.98
1291_T1313_V2.2160.98
235_L283_M2.2060.98
1428_R1432_T2.2020.98
1325_I1329_C2.2010.98
1306_L1337_R2.1970.98
1151_M1158_R2.1700.98
383_D1314_G2.1680.98
1225_V1255_T2.1420.98
365_K386_V2.1340.98
610_L650_I2.1260.98
450_D453_T2.1240.98
75_W78_A2.1160.98
763_D1178_K2.1140.98
63_D81_Y2.1040.98
580_I613_L2.1040.98
870_P874_E2.1000.98
74_G77_L2.0990.98
1069_V1073_L2.0970.98
520_P715_S2.0900.98
387_E408_H2.0880.97
1367_C1385_F2.0870.97
1376_C1430_L2.0840.97
1403_F1407_V2.0820.97
1264_D1287_E2.0810.97
338_G359_A2.0810.97
601_E643_L2.0800.97
64_R206_R2.0680.97
1413_E1463_K2.0650.97
1279_G1307_I2.0320.97
713_I1036_S2.0250.97
73_R76_R2.0240.97
95_A136_R2.0130.97
601_E637_R2.0120.97
853_E856_K2.0100.97
1079_I1143_I2.0050.97
1264_D1306_L2.0040.97
123_E134_L2.0010.97
882_S901_T1.9960.97
1165_R1168_L1.9940.97
1359_V1362_I1.9900.97
628_P664_V1.9790.97
840_E1156_V1.9790.97
1339_Y1430_L1.9570.96
112_S143_N1.9500.96
80_N144_A1.9410.96
602_K606_S1.9320.96
882_S902_N1.9210.96
632_G744_C1.9180.96
762_Q766_N1.9140.96
1052_T1067_L1.9030.96
1407_V1414_V1.8960.96
919_P990_V1.8930.95
1222_K1226_D1.8910.95
796_N799_V1.8870.95
874_E903_K1.8870.95
1446_I1453_F1.8800.95
1306_L1437_H1.8710.95
923_V1254_Q1.8690.95
1212_L1241_D1.8680.95
103_E116_W1.8680.95
84_G140_I1.8680.95
38_R379_D1.8630.95
1166_T1188_L1.8610.95
835_A1172_L1.8580.95
550_L565_L1.8550.95
341_M348_A1.8470.95
68_I204_D1.8380.95
65_F207_L1.8140.94
878_E882_S1.8050.94
200_L203_A1.8050.94
1381_T1403_F1.8020.94
852_S1141_E1.7960.94
556_I673_I1.7920.94
640_D746_Q1.7880.94
424_E428_K1.7810.94
1250_G1254_Q1.7740.94
1279_G1288_L1.7690.93
566_T612_V1.7660.93
103_E107_Q1.7620.93
882_S1137_T1.7610.93
299_R326_N1.7600.93
1217_L1235_F1.7550.93
815_Y1139_Y1.7400.93
302_R416_L1.7390.93
581_T617_N1.7390.93
1415_L1468_K1.7330.93
1278_F1290_L1.7310.93
1269_Y1291_T1.7280.93
1139_Y1143_I1.7270.93
1330_L1355_A1.7240.93
104_E167_R1.7230.93
1105_L1114_A1.7200.92
834_L1187_L1.7150.92
684_R688_T1.7130.92
598_D637_R1.7120.92
582_F765_L1.7070.92
1319_S1441_Q1.7040.92
985_F1243_S1.6890.92
1330_L1338_L1.6870.92
531_T726_R1.6740.91
1159_L1162_L1.6720.91
362_V375_V1.6690.91
904_V924_N1.6690.91
920_A1258_D1.6590.91
265_D268_D1.6560.91
1198_A1202_T1.6510.91
1333_A1355_A1.6500.91
73_R77_L1.6490.91
363_I406_I1.6450.91
1341_A1442_R1.6440.91
579_D617_N1.6400.91
865_I952_Y1.6390.91
1298_V1309_I1.6310.90
1399_E1442_R1.6300.90
128_E132_S1.6270.90
1330_L1349_G1.6270.90
865_I956_L1.6250.90
663_A713_I1.6180.90
1376_C1431_I1.6110.90
298_I346_F1.6100.90
1339_Y1437_H1.6100.90
423_K427_E1.6070.90
1134_F1137_T1.6060.90
248_R282_S1.6020.89
1147_T1151_M1.6020.89
102_V140_I1.6000.89
408_H411_E1.5990.89
542_E546_Q1.5970.89
1248_L1286_V1.5940.89
21_E404_G1.5930.89
1320_H1341_A1.5870.89
736_L740_V1.5790.89
990_V1246_A1.5790.89
1080_I1162_L1.5790.89
144_A153_M1.5780.89
501_I767_L1.5770.89
1329_C1344_A1.5700.89
1006_V1052_T1.5700.89
1267_K1287_E1.5700.89
1356_I1430_L1.5680.88
1217_L1268_A1.5650.88
369_I397_M1.5630.88
16_L347_A1.5580.88
73_R78_A1.5530.88
82_A179_L1.5530.88
733_A741_V1.5470.88
1063_H1202_T1.5470.88
843_V1157_T1.5430.88
1427_L1454_A1.5400.88
855_F1141_E1.5370.87
740_V760_F1.5360.87
1117_V1129_Y1.5310.87
920_A924_N1.5280.87
86_L176_V1.5230.87
1432_T1436_Q1.5170.87
992_P1250_G1.5040.86
839_G843_V1.5030.86
819_A823_N1.5030.86
1408_N1412_V1.4950.86
361_Y387_E1.4950.86
714_M722_I1.4930.86
485_S1109_H1.4920.86
852_S855_F1.4890.86
737_H756_S1.4880.86
22_G401_T1.4870.86
838_P1153_Q1.4850.86
1263_A1306_L1.4790.85
105_E163_R1.4770.85
1445_E1449_N1.4760.85
99_R118_D1.4750.85
301_M304_L1.4740.85
19_H367_K1.4660.85
1417_V1424_E1.4660.85
1073_L1090_F1.4650.85
554_S707_N1.4630.85
396_L412_T1.4630.85
66_F83_V1.4590.84
1221_A1268_A1.4590.84
740_V757_F1.4580.84
1237_I1244_V1.4570.84
1233_F1270_F1.4570.84
524_A708_K1.4500.84
616_R652_E1.4500.84
847_D1161_D1.4480.84
1442_R1445_E1.4480.84
381_Q384_E1.4460.84
1066_R1201_C1.4430.84
113_I140_I1.4410.84
345_R402_R1.4410.84
303_L326_N1.4400.84
867_A1093_G1.4390.84
1288_L1307_I1.4380.84
1250_G1253_A1.4330.83
1147_T1159_L1.4330.83
1380_K1400_S1.4300.83
1449_N1453_F1.4270.83
1146_E1149_E1.4250.83
1282_N1305_G1.4210.83
759_D1181_K1.4170.83
836_I1080_I1.4170.83
85_M139_Q1.4160.83
1374_I1430_L1.4120.82
472_I678_A1.4110.82
123_E198_F1.4110.82
1069_V1090_F1.4000.82
899_Y924_N1.3970.82
1224_F1265_P1.3960.82
318_E418_S1.3960.82
1310_R1313_V1.3950.82
840_E1165_R1.3900.81
70_A73_R1.3840.81
1289_Y1437_H1.3830.81
823_N1150_L1.3790.81
26_H30_R1.3780.81
761_Q765_L1.3780.81
1320_H1445_E1.3750.81
737_H753_G1.3750.81
150_P181_N1.3740.81
736_L741_V1.3720.81
732_E751_R1.3690.80
658_D661_H1.3670.80
1252_I1266_I1.3670.80
1132_L1135_K1.3670.80
1416_S1458_A1.3610.80
1158_R1162_L1.3570.80
597_C743_L1.3560.80
457_Y680_E1.3560.80
122_N200_L1.3550.80
836_I1150_L1.3540.80
631_V651_V1.3530.80
577_T614_S1.3530.80
16_L371_C1.3530.80
763_D1177_A1.3510.80
142_V160_A1.3510.80
1330_L1357_T1.3500.79
48_D129_I1.3490.79
682_L698_V1.3470.79
1308_A1437_H1.3430.79
71_Q76_R1.3390.79
1244_V1270_F1.3370.79
1374_I1393_F1.3370.79
1077_V1081_K1.3340.79
1253_A1283_A1.3340.79
1431_I1435_V1.3330.79
529_L711_Y1.3300.78
1084_I1156_V1.3300.78
679_Y703_R1.3280.78
460_Q618_I1.3240.78
32_A212_C1.3230.78
382_P1314_G1.3220.78
840_E1168_L1.3180.78
1217_L1248_L1.3170.78
250_W727_C1.3160.78
565_L610_L1.3150.78
108_R163_R1.3120.77
372_A377_I1.3120.77
878_E901_T1.3110.77
1232_T1267_K1.3080.77
755_A759_D1.3080.77
419_R542_E1.3070.77
59_L184_N1.3070.77
812_Y1145_R1.3040.77
985_F1241_D1.3030.77
1248_L1266_I1.3000.77
1145_R1149_E1.2990.77
15_G35_A1.2980.77
583_D586_K1.2950.77
1299_G1307_I1.2930.76
859_D1068_Q1.2910.76
1082_A1090_F1.2900.76
927_V995_M1.2860.76
1237_I1274_A1.2840.76
109_E163_R1.2840.76
810_G1138_N1.2830.76
1083_A1159_L1.2830.76
85_M137_I1.2830.76
597_C634_I1.2810.76
1233_F1268_A1.2740.75
472_I682_L1.2730.75
796_N821_L1.2690.75
1083_A1163_I1.2680.75
106_L142_V1.2630.75
1225_V1252_I1.2630.75
845_I1145_R1.2590.74
428_K544_E1.2590.74
1063_H1198_A1.2570.74
537_M546_Q1.2550.74
89_N98_A1.2540.74
834_L1188_L1.2540.74
1433_E1437_H1.2530.74
277_G285_N1.2470.74
496_S791_E1.2460.74
414_D418_S1.2450.74
105_E108_R1.2440.74
100_R103_E1.2400.73
1399_E1453_F1.2360.73
28_V368_L1.2350.73
70_A115_G1.2340.73
1431_I1446_I1.2330.73
517_P933_A1.2330.73
604_V647_A1.2330.73
741_V750_S1.2300.73
1453_F1456_K1.2300.73
1246_A1250_G1.2240.72
258_F272_F1.2230.72
1249_S1286_V1.2200.72
476_G701_N1.2200.72
137_I198_F1.2140.72
286_M304_L1.2140.72
637_R641_Q1.2110.71
366_D384_E1.2100.71
1223_P1227_E1.2090.71
819_A1075_T1.2070.71
995_M1066_R1.2070.71
1415_L1459_L1.2050.71
889_S926_D1.2000.71
844_N847_D1.1960.71
82_A153_M1.1950.70
686_V695_Y1.1910.70
1325_I1340_A1.1900.70
409_S413_D1.1890.70
583_D622_R1.1870.70
185_I230_Q1.1860.70
596_L611_L1.1850.70
733_A748_A1.1840.70
919_P1283_A1.1810.70
14_F44_A1.1800.69
69_V73_R1.1800.69
839_G1156_V1.1790.69
839_G842_A1.1770.69
122_N197_R1.1760.69
1216_Q1220_Q1.1730.69
590_E594_K1.1700.69
601_E605_R1.1690.69
1349_G1357_T1.1680.69
1425_E1429_G1.1680.69
369_I399_I1.1680.69
1282_N1288_L1.1670.69
656_A662_F1.1640.68
61_K83_V1.1640.68
1159_L1168_L1.1620.68
1219_Q1222_K1.1610.68
842_A1153_Q1.1610.68
1319_S1341_A1.1600.68
105_E167_R1.1600.68
1357_T1375_V1.1590.68
1429_G1432_T1.1580.68
815_Y823_N1.1560.68
64_R68_I1.1540.68
363_I369_I1.1530.68
580_I630_A1.1530.68
403_S415_D1.1500.67
1414_V1460_V1.1500.67
96_A100_R1.1480.67
594_K743_L1.1470.67
1232_T1269_Y1.1470.67
1217_L1221_A1.1460.67
1151_M1156_V1.1460.67
211_I347_A1.1440.67
592_T599_K1.1430.67
74_G78_A1.1420.67
382_P1317_F1.1410.67
484_G1035_L1.1390.67
1023_I1052_T1.1360.66
1223_P1229_Q1.1360.66
316_D321_A1.1350.66
287_L301_M1.1340.66
1215_A1247_S1.1330.66
794_A829_T1.1300.66
825_R832_D1.1290.66
70_A75_W1.1280.66
1311_P1341_A1.1280.66
18_A369_I1.1280.66
1390_T1411_L1.1270.66
420_H542_E1.1260.66
992_P1247_S1.1240.66
1309_I1325_I1.1230.66
121_T126_L1.1230.66
815_Y1143_I1.1220.66
363_I996_I1.1220.66
1402_D1406_R1.1200.65
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554_S557_L0.5000.21
1065_I1216_Q0.5000.21
304_L1331_Y0.5000.21
578_L1401_G0.5000.21
89_N95_A0.5000.21
110_T272_F0.5000.21
592_T702_Y0.5000.21
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1ecfA 4 0.3217 100 0.959 Contact Map
1xffA 2 0.1548 100 0.959 Contact Map
4amvA 2 0.3701 99.9 0.962 Contact Map
1ao0A 3 0.2948 99.9 0.963 Contact Map
1te5A 2 0.148 99.9 0.964 Contact Map
3r2gA 3 0.1992 99.9 0.964 Contact Map
2qr6A 3 0.2221 99.9 0.967 Contact Map
3mdnA 4 0.1413 99.9 0.967 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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