DACC - ECOLI - GREMLIN Contacts

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DACC - D-alanyl-D-alanine carboxypeptidase DacC

UniProt:	P08506	Sequences: MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFHQWFGSWFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10203
Length:	400 (366)
Sequences:	4215 (3343)
Seq/√Len:	174.8

ECOLI - DACC DACA DACD PBP7
BACSU - DACA DACF DACB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
55_E	58_A	3.743	1.00
59_D	185_R	3.716	1.00
145_A	154_L	3.039	1.00
90_M	118_Q	3.017	1.00
121_V	140_L	2.980	1.00
94_G	142_D	2.914	1.00
353_T	365_Q	2.784	1.00
76_V	140_L	2.700	1.00
232_D	256_R	2.597	1.00
57_N	60_E	2.585	1.00
44_L	281_G	2.567	1.00
191_G	234_M	2.563	1.00
95_K	115_P	2.519	1.00
89_D	143_Y	2.466	1.00
126_K	207_E	2.459	1.00
158_Y	161_K	2.458	1.00
164_L	190_L	2.432	1.00
257_L	281_G	2.423	1.00
78_Q	158_Y	2.420	1.00
350_V	367_P	2.415	1.00
128_V	140_L	2.367	1.00
61_K	181_F	2.357	1.00
230_N	252_Q	2.337	1.00
74_Y	193_A	2.304	1.00
120_S	123_D	2.223	1.00
70_I	247_V	2.222	1.00
232_D	249_S	2.209	1.00
127_G	133_G	2.201	1.00
59_D	166_N	2.144	1.00
345_L	370_V	2.100	1.00
148_Q	172_V	2.058	1.00
42_W	54_A	2.057	1.00
47_Y	258_I	2.041	1.00
128_V	137_C	2.036	1.00
71_M	167_T	2.035	1.00
289_T	292_K	2.010	1.00
150_S	153_G	2.007	1.00
92_T	118_Q	1.993	1.00
307_K	372_E	1.993	1.00
251_T	254_D	1.988	1.00
185_R	189_L	1.977	1.00
86_K	89_D	1.947	1.00
313_G	371_M	1.906	1.00
259_S	274_S	1.897	1.00
147_S	150_S	1.854	1.00
61_K	166_N	1.844	1.00
357_Q	362_S	1.821	1.00
250_A	282_F	1.802	1.00
273_E	276_K	1.784	1.00
153_G	157_G	1.778	1.00
341_L	351_V	1.751	1.00
71_M	159_A	1.744	1.00
191_G	247_V	1.738	1.00
95_K	99_A	1.735	1.00
93_V	139_A	1.734	1.00
91_V	139_A	1.730	1.00
91_V	143_Y	1.727	1.00
162_L	193_A	1.725	1.00
145_A	150_S	1.713	1.00
85_I	121_V	1.704	1.00
350_V	353_T	1.687	1.00
90_M	120_S	1.678	1.00
333_S	357_Q	1.654	1.00
44_L	257_L	1.642	1.00
349_Q	370_V	1.629	1.00
315_G	367_P	1.627	1.00
67_L	247_V	1.612	1.00
41_A	184_A	1.603	1.00
96_D	142_D	1.601	1.00
164_L	189_L	1.589	1.00
88_T	122_A	1.588	1.00
362_S	365_Q	1.586	1.00
73_S	129_I	1.581	1.00
299_T	309_E	1.577	1.00
94_G	97_A	1.574	1.00
200_E	203_A	1.574	1.00
72_T	137_C	1.572	1.00
41_A	62_L	1.568	1.00
67_L	187_M	1.566	1.00
228_N	279_T	1.562	1.00
192_K	258_I	1.557	1.00
79_A	84_K	1.554	1.00
167_T	182_S	1.554	1.00
239_T	242_A	1.550	1.00
73_S	128_V	1.542	1.00
130_I	207_E	1.533	1.00
168_T	181_F	1.528	1.00
193_A	196_H	1.507	1.00
46_D	255_M	1.504	1.00
351_V	370_V	1.497	1.00
85_I	143_Y	1.464	1.00
122_A	126_K	1.464	1.00
170_Q	179_G	1.457	1.00
209_E	216_R	1.455	1.00
335_T	355_D	1.453	1.00
157_G	161_K	1.451	1.00
184_A	262_L	1.443	1.00
40_R	263_G	1.434	1.00
355_D	365_Q	1.429	1.00
176_D	241_G	1.417	1.00
310_V	370_V	1.407	1.00
346_K	373_N	1.404	1.00
122_A	204_I	1.395	1.00
76_V	121_V	1.394	1.00
64_P	182_S	1.367	1.00
73_S	125_N	1.364	1.00
43_I	185_R	1.361	1.00
346_K	349_Q	1.359	1.00
347_K	373_N	1.353	1.00
122_A	203_A	1.351	1.00
93_V	113_L	1.339	1.00
127_G	136_A	1.336	1.00
170_Q	177_A	1.324	1.00
334_Y	368_L	1.323	1.00
193_A	197_D	1.318	1.00
87_L	125_N	1.317	1.00
355_D	362_S	1.312	1.00
333_S	355_D	1.311	1.00
289_T	319_S	1.308	1.00
67_L	262_L	1.292	1.00
231_V	248_A	1.291	1.00
43_I	58_A	1.290	1.00
100_T	138_I	1.283	1.00
68_T	180_Q	1.279	1.00
81_K	200_E	1.277	1.00
187_M	247_V	1.276	1.00
192_K	196_H	1.271	1.00
126_K	210_F	1.268	1.00
251_T	256_R	1.259	1.00
63_D	176_D	1.251	1.00
126_K	130_I	1.245	1.00
248_A	274_S	1.242	1.00
154_L	157_G	1.239	1.00
63_D	241_G	1.230	1.00
74_Y	158_Y	1.223	1.00
249_S	256_R	1.222	1.00
87_L	122_A	1.219	1.00
44_L	259_S	1.214	1.00
211_T	216_R	1.211	1.00
202_Y	249_S	1.206	1.00
159_A	164_L	1.204	1.00
208_K	225_W	1.202	1.00
111_M	127_G	1.200	1.00
74_Y	197_D	1.193	1.00
97_A	142_D	1.190	1.00
286_E	324_R	1.189	1.00
335_T	353_T	1.188	1.00
132_S	235_K	1.184	1.00
85_I	140_L	1.175	1.00
311_N	371_M	1.173	1.00
42_W	56_G	1.171	1.00
370_V	373_N	1.161	1.00
150_S	154_L	1.154	1.00
43_I	52_V	1.149	1.00
41_A	57_N	1.144	1.00
75_V	79_A	1.142	1.00
70_I	191_G	1.128	1.00
70_I	234_M	1.116	1.00
289_T	317_A	1.115	1.00
58_A	185_R	1.111	1.00
59_D	183_T	1.106	1.00
377_G	381_G	1.106	1.00
45_M	188_A	1.092	1.00
76_V	128_V	1.089	1.00
242_A	245_N	1.086	1.00
306_D	375_E	1.086	1.00
300_Q	312_L	1.085	1.00
80_L	201_E	1.083	1.00
158_Y	193_A	1.079	1.00
264_A	273_E	1.079	1.00
170_Q	180_Q	1.077	1.00
16_A	19_F	1.076	1.00
228_N	231_V	1.070	1.00
152_I	172_V	1.060	1.00
292_K	317_A	1.056	1.00
152_I	156_N	1.054	1.00
292_K	295_A	1.049	1.00
50_G	192_K	1.047	1.00
275_E	279_T	1.045	1.00
266_T	269_I	1.039	0.99
76_V	85_I	1.018	0.99
137_C	172_V	1.012	0.99
96_D	149_E	1.010	0.99
331_K	357_Q	1.005	0.99
261_V	274_S	1.004	0.99
312_L	351_V	1.004	0.99
315_G	369_I	1.000	0.99
98_W	115_P	0.999	0.99
205_H	234_M	0.998	0.99
326_Q	329_N	0.996	0.99
231_V	278_L	0.994	0.99
248_A	278_L	0.989	0.99
40_R	62_L	0.987	0.99
39_A	264_A	0.985	0.99
93_V	119_V	0.982	0.99
378_G	381_G	0.978	0.99
287_T	321_T	0.977	0.99
250_A	278_L	0.977	0.99
168_T	179_G	0.976	0.99
252_Q	282_F	0.968	0.99
166_N	183_T	0.962	0.99
96_D	148_Q	0.958	0.99
64_P	262_L	0.952	0.99
202_Y	256_R	0.946	0.99
159_A	190_L	0.944	0.99
75_V	158_Y	0.943	0.99
61_K	183_T	0.942	0.99
77_G	201_E	0.942	0.99
133_G	136_A	0.939	0.99
132_S	236_T	0.937	0.99
195_I	202_Y	0.935	0.99
188_A	260_V	0.932	0.99
299_T	311_N	0.930	0.99
203_A	206_K	0.929	0.99
305_G	343_A	0.929	0.99
138_I	148_Q	0.927	0.99
88_T	120_S	0.927	0.99
75_V	144_V	0.921	0.99
114_K	117_D	0.911	0.99
70_I	194_L	0.910	0.99
357_Q	360_G	0.907	0.99
332_A	356_F	0.903	0.99
310_V	374_V	0.902	0.99
251_T	282_F	0.900	0.99
377_G	385_D	0.900	0.99
144_V	154_L	0.899	0.98
79_A	82_A	0.893	0.98
310_V	345_L	0.893	0.98
46_D	287_T	0.892	0.98
91_V	121_V	0.889	0.98
234_M	249_S	0.888	0.98
291_I	314_A	0.887	0.98
156_N	168_T	0.887	0.98
311_N	372_E	0.884	0.98
80_L	85_I	0.883	0.98
124_L	136_A	0.883	0.98
48_A	319_S	0.882	0.98
93_V	124_L	0.882	0.98
323_P	326_Q	0.881	0.98
187_M	262_L	0.872	0.98
212_F	217_Q	0.872	0.98
287_T	319_S	0.871	0.98
48_A	256_R	0.868	0.98
113_L	139_A	0.866	0.98
48_A	287_T	0.866	0.98
189_L	192_K	0.863	0.98
165_T	185_R	0.861	0.98
157_G	160_K	0.858	0.98
87_L	204_I	0.857	0.98
293_P	317_A	0.856	0.98
228_N	250_A	0.853	0.98
80_L	87_L	0.851	0.98
38_D	273_E	0.848	0.98
318_G	364_E	0.848	0.98
79_A	144_V	0.846	0.98
344_P	374_V	0.844	0.98
230_N	279_T	0.841	0.98
129_I	205_H	0.841	0.98
280_W	285_F	0.839	0.98
252_Q	279_T	0.837	0.98
78_Q	197_D	0.836	0.98
92_T	143_Y	0.835	0.98
376_E	382_R	0.833	0.98
46_D	321_T	0.833	0.98
119_V	124_L	0.832	0.98
202_Y	205_H	0.832	0.98
81_K	197_D	0.831	0.97
36_S	56_G	0.827	0.97
341_L	345_L	0.825	0.97
302_V	343_A	0.824	0.97
269_I	273_E	0.822	0.97
119_V	123_D	0.821	0.97
66_S	235_K	0.821	0.97
265_K	269_I	0.819	0.97
182_S	187_M	0.818	0.97
40_R	60_E	0.813	0.97
84_K	154_L	0.812	0.97
25_A	28_A	0.809	0.97
354_I	366_R	0.807	0.97
280_W	284_F	0.805	0.97
169_F	187_M	0.803	0.97
246_L	274_S	0.803	0.97
349_Q	373_N	0.803	0.97
43_I	260_V	0.803	0.97
43_I	188_A	0.802	0.97
176_D	239_T	0.802	0.97
123_D	126_K	0.802	0.97
226_S	275_E	0.801	0.97
318_G	366_R	0.799	0.97
302_V	305_G	0.798	0.97
160_K	165_T	0.795	0.97
78_Q	82_A	0.794	0.97
345_L	351_V	0.793	0.97
71_M	155_M	0.792	0.97
194_L	234_M	0.792	0.97
45_M	192_K	0.792	0.97
76_V	144_V	0.791	0.97
65_A	242_A	0.791	0.97
222_R	271_F	0.781	0.96
70_I	129_I	0.779	0.96
261_V	264_A	0.779	0.96
117_D	215_I	0.778	0.96
43_I	55_E	0.776	0.96
79_A	154_L	0.774	0.96
23_P	26_F	0.772	0.96
228_N	275_E	0.771	0.96
247_V	260_V	0.770	0.96
125_N	204_I	0.769	0.96
201_E	205_H	0.761	0.96
238_T	244_Y	0.759	0.96
187_M	191_G	0.759	0.96
123_D	213_N	0.754	0.96
305_G	374_V	0.751	0.95
77_G	125_N	0.749	0.95
149_E	153_G	0.748	0.95
21_F	24_T	0.748	0.95
109_S	133_G	0.748	0.95
85_I	89_D	0.739	0.95
195_I	256_R	0.736	0.95
217_Q	220_R	0.734	0.95
24_T	28_A	0.731	0.95
85_I	91_V	0.731	0.95
159_A	169_F	0.730	0.95
110_V	113_L	0.729	0.95
71_M	75_V	0.729	0.95
210_F	217_Q	0.725	0.95
209_E	218_P	0.725	0.95
75_V	78_Q	0.723	0.94
41_A	262_L	0.722	0.94
67_L	245_N	0.721	0.94
83_D	86_K	0.720	0.94
195_I	232_D	0.719	0.94
228_N	278_L	0.715	0.94
111_M	119_V	0.715	0.94
383_V	387_V	0.714	0.94
330_L	358_L	0.713	0.94
71_M	169_F	0.713	0.94
126_K	204_I	0.709	0.94
94_G	139_A	0.708	0.94
194_L	201_E	0.706	0.94
70_I	190_L	0.703	0.94
239_T	245_N	0.701	0.93
191_G	233_G	0.700	0.93
221_N	246_L	0.700	0.93
73_S	77_G	0.699	0.93
332_A	354_I	0.699	0.93
155_M	159_A	0.699	0.93
17_F	20_L	0.698	0.93
91_V	124_L	0.697	0.93
296_T	311_N	0.697	0.93
166_N	186_D	0.696	0.93
159_A	162_L	0.696	0.93
221_N	248_A	0.693	0.93
329_N	359_N	0.691	0.93
259_S	277_L	0.690	0.93
259_S	278_L	0.690	0.93
288_V	327_L	0.685	0.93
73_S	205_H	0.685	0.93
156_N	169_F	0.685	0.93
131_Q	220_R	0.685	0.93
71_M	164_L	0.681	0.92
276_K	279_T	0.680	0.92
162_L	190_L	0.678	0.92
66_S	69_K	0.678	0.92
330_L	363_I	0.678	0.92
348_G	370_V	0.669	0.92
66_S	237_G	0.669	0.92
100_T	175_L	0.668	0.92
314_A	368_L	0.665	0.92
108_S	112_F	0.662	0.91
211_T	214_K	0.661	0.91
78_Q	161_K	0.659	0.91
87_L	90_M	0.659	0.91
248_A	259_S	0.659	0.91
62_L	262_L	0.659	0.91
255_M	287_T	0.655	0.91
45_M	258_I	0.655	0.91
63_D	177_A	0.655	0.91
111_M	131_Q	0.654	0.91
53_L	285_F	0.651	0.91
154_L	158_Y	0.649	0.91
75_V	155_M	0.647	0.90
255_M	285_F	0.647	0.90
66_S	132_S	0.646	0.90
55_E	185_R	0.644	0.90
244_Y	267_D	0.643	0.90
230_N	250_A	0.640	0.90
131_Q	217_Q	0.635	0.90
45_M	189_L	0.632	0.89
119_V	212_F	0.631	0.89
130_I	210_F	0.631	0.89
312_L	368_L	0.629	0.89
67_L	70_I	0.626	0.89
51_K	321_T	0.625	0.89
358_L	363_I	0.623	0.89
55_E	59_D	0.622	0.89
44_L	277_L	0.622	0.89
96_D	100_T	0.621	0.89
304_F	342_T	0.620	0.89
306_D	381_G	0.620	0.89
71_M	190_L	0.619	0.88
75_V	154_L	0.618	0.88
379_F	383_V	0.616	0.88
187_M	245_N	0.614	0.88
13_A	19_F	0.614	0.88
100_T	110_V	0.613	0.88
51_K	361_K	0.610	0.88
294_D	313_G	0.610	0.88
294_D	314_A	0.605	0.87
167_T	186_D	0.605	0.87
168_T	180_Q	0.605	0.87
201_E	204_I	0.601	0.87
194_L	205_H	0.601	0.87
107_G	110_V	0.601	0.87
123_D	210_F	0.600	0.87
205_H	233_G	0.597	0.87
13_A	16_A	0.597	0.87
201_E	234_M	0.594	0.86
228_N	252_Q	0.593	0.86
182_S	186_D	0.593	0.86
314_A	318_G	0.593	0.86
35_P	280_W	0.589	0.86
205_H	249_S	0.587	0.86
222_R	226_S	0.586	0.86
277_L	281_G	0.585	0.85
85_I	144_V	0.583	0.85
77_G	200_E	0.582	0.85
65_A	68_T	0.581	0.85
124_L	140_L	0.580	0.85
139_A	143_Y	0.579	0.85
232_D	251_T	0.579	0.85
165_T	189_L	0.577	0.85
158_Y	162_L	0.576	0.85
331_K	360_G	0.576	0.85
129_I	201_E	0.576	0.85
381_G	384_W	0.575	0.85
156_N	160_K	0.575	0.85
68_T	182_S	0.574	0.84
37_V	42_W	0.573	0.84
144_V	152_I	0.573	0.84
108_S	135_D	0.573	0.84
343_A	374_V	0.572	0.84
79_A	85_I	0.572	0.84
46_D	49_S	0.571	0.84
304_F	386_F	0.568	0.84
284_F	323_P	0.567	0.84
100_T	107_G	0.567	0.84
69_K	134_N	0.566	0.84
221_N	224_L	0.565	0.83
23_P	27_A	0.560	0.83
288_V	322_I	0.560	0.83
117_D	213_N	0.559	0.83
278_L	281_G	0.557	0.83
348_G	369_I	0.557	0.83
264_A	269_I	0.557	0.83
220_R	238_T	0.556	0.83
301_R	309_E	0.556	0.83
334_Y	354_I	0.554	0.82
57_N	62_L	0.554	0.82
152_I	167_T	0.554	0.82
28_A	31_T	0.553	0.82
61_K	182_S	0.553	0.82
51_K	326_Q	0.551	0.82
15_S	19_F	0.550	0.82
358_L	361_K	0.550	0.82
353_T	367_P	0.550	0.82
45_M	50_G	0.549	0.82
197_D	200_E	0.548	0.82
236_T	270_R	0.547	0.81
173_H	176_D	0.547	0.81
195_I	234_M	0.547	0.81
381_G	385_D	0.547	0.81
228_N	282_F	0.546	0.81
65_A	237_G	0.545	0.81
286_E	325_G	0.544	0.81
336_L	352_G	0.543	0.81
141_A	148_Q	0.543	0.81
87_L	200_E	0.543	0.81
52_V	58_A	0.543	0.81
231_V	250_A	0.542	0.81
261_V	277_L	0.541	0.81
176_D	242_A	0.540	0.81
109_S	236_T	0.540	0.81
66_S	236_T	0.540	0.81
65_A	236_T	0.539	0.81
96_D	138_I	0.538	0.80
53_L	257_L	0.537	0.80
78_Q	81_K	0.536	0.80
74_Y	162_L	0.536	0.80
122_A	200_E	0.536	0.80
19_F	22_A	0.535	0.80
266_T	272_N	0.535	0.80
322_I	330_L	0.535	0.80
52_V	55_E	0.534	0.80
39_A	273_E	0.532	0.80
22_A	26_F	0.532	0.80
302_V	341_L	0.531	0.80
22_A	27_A	0.530	0.79
226_S	271_F	0.530	0.79
77_G	205_H	0.530	0.79
291_I	294_D	0.529	0.79
291_I	356_F	0.529	0.79
47_Y	192_K	0.528	0.79
164_L	186_D	0.528	0.79
77_G	204_I	0.527	0.79
56_G	273_E	0.526	0.79
246_L	271_F	0.526	0.79
246_L	261_V	0.525	0.79
64_P	187_M	0.524	0.79
202_Y	206_K	0.521	0.78
64_P	68_T	0.521	0.78
111_M	133_G	0.521	0.78
187_M	190_L	0.521	0.78
288_V	291_I	0.521	0.78
74_Y	190_L	0.520	0.78
37_V	273_E	0.519	0.78
222_R	267_D	0.519	0.78
25_A	29_E	0.518	0.78
130_I	204_I	0.517	0.78
180_Q	245_N	0.516	0.78
113_L	119_V	0.516	0.78
13_A	20_L	0.516	0.78
337_T	340_Q	0.515	0.77
38_D	269_I	0.515	0.77
302_V	310_V	0.515	0.77
100_T	108_S	0.514	0.77
238_T	267_D	0.514	0.77
75_V	167_T	0.513	0.77
71_M	162_L	0.512	0.77
303_W	340_Q	0.512	0.77
296_T	299_T	0.512	0.77
350_V	369_I	0.511	0.77
202_Y	232_D	0.510	0.77
27_A	30_Q	0.510	0.77
176_D	179_G	0.509	0.77
169_F	190_L	0.509	0.77
70_I	201_E	0.508	0.77
302_V	344_P	0.508	0.77
65_A	132_S	0.508	0.77
119_V	127_G	0.507	0.76
199_P	202_Y	0.507	0.76
110_V	135_D	0.504	0.76
378_G	382_R	0.503	0.76
266_T	271_F	0.503	0.76
23_P	28_A	0.501	0.76
246_L	259_S	0.501	0.76
96_D	99_A	0.500	0.75
45_M	52_V	0.500	0.75
305_G	344_P	0.500	0.75

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mzfA	1	0.88	100	0.253	Contact Map
4k91A	1	0.8575	100	0.267	Contact Map
3itaA	1	0.8725	100	0.268	Contact Map
3a3jA	1	0.8525	100	0.28	Contact Map
1xp4A	3	0.8425	100	0.286	Contact Map
3mfdA	1	0.7975	100	0.3	Contact Map
3hunA	1	0.7975	100	0.38	Contact Map
1tvfA	1	0.825	100	0.411	Contact Map
4pprA	1	0.715	100	0.491	Contact Map
4ryeA	1	0.6375	100	0.498	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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