MURB - ECOLI - GREMLIN Contacts

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MURB - UDP-N-acetylenolpyruvoylglucosamine reductase

UniProt:	P08373	Sequences: MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11205
Length:	342 (325)
Sequences:	2032 (1455)
Seq/√Len:	80.7

ECOLI - MURB
BACSU - MURB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
67_I	84_G	3.554	1.00
274_L	313_K	3.420	1.00
88_N	91_R	2.966	1.00
108_A	207_F	2.965	1.00
315_G	321_W	2.893	1.00
129_L	133_C	2.663	1.00
133_C	136_V	2.662	1.00
69_G	87_E	2.650	1.00
236_V	263_L	2.553	1.00
150_T	153_E	2.492	1.00
263_L	320_V	2.464	1.00
82_H	177_G	2.464	1.00
18_Q	59_R	2.425	1.00
114_V	176_V	2.270	1.00
282_A	298_A	2.241	1.00
12_G	225_G	2.191	1.00
236_V	240_T	2.165	1.00
138_S	147_V	2.142	1.00
92_L	178_L	2.107	1.00
133_C	156_F	2.093	1.00
22_C	66_R	2.087	1.00
278_Q	295_E	2.082	1.00
250_T	271_Q	2.057	1.00
71_E	82_H	2.050	1.00
135_Y	177_G	2.035	1.00
218_L	222_K	2.001	1.00
218_L	221_P	1.980	1.00
92_L	114_V	1.975	1.00
193_L	210_V	1.967	1.00
46_L	52_V	1.966	1.00
95_Y	99_E	1.944	1.00
68_K	87_E	1.910	1.00
241_A	253_N	1.906	1.00
266_G	289_A	1.906	1.00
20_I	64_I	1.906	1.00
245_L	253_N	1.901	1.00
129_L	178_L	1.898	1.00
140_E	170_R	1.879	1.00
96_T	104_L	1.877	1.00
11_F	227_A	1.864	1.00
138_S	171_F	1.844	1.00
137_D	175_A	1.828	1.00
154_C	163_F	1.823	1.00
104_L	132_V	1.780	1.00
274_L	309_H	1.772	1.00
70_I	95_Y	1.767	1.00
138_S	149_L	1.738	1.00
90_H	108_A	1.734	1.00
204_Q	208_N	1.725	1.00
114_V	178_L	1.720	1.00
279_I	309_H	1.720	1.00
94_K	207_F	1.720	1.00
41_Q	61_T	1.714	1.00
160_D	165_H	1.712	1.00
284_V	306_L	1.701	1.00
22_C	64_I	1.694	1.00
281_G	302_D	1.684	1.00
147_V	153_E	1.645	1.00
84_G	87_E	1.640	1.00
90_H	207_F	1.627	1.00
75_E	182_K	1.621	1.00
146_Q	174_V	1.617	1.00
192_D	195_R	1.612	1.00
277_M	309_H	1.607	1.00
157_G	160_D	1.603	1.00
278_Q	283_A	1.597	1.00
117_S	178_L	1.590	1.00
238_A	242_K	1.581	1.00
135_Y	148_R	1.580	1.00
4_S	14_D	1.579	1.00
137_D	148_R	1.576	1.00
232_K	323_E	1.570	1.00
16_N	57_D	1.546	0.99
283_A	295_E	1.545	0.99
272_C	314_V	1.544	0.99
155_R	166_E	1.540	0.99
256_Q	259_G	1.531	0.99
274_L	277_M	1.530	0.99
252_P	264_A	1.528	0.99
6_K	14_D	1.519	0.99
13_I	300_S	1.518	0.99
281_G	297_N	1.500	0.99
82_H	175_A	1.494	0.99
98_Q	204_Q	1.488	0.99
219_P	222_K	1.488	0.99
29_L	172_A	1.474	0.99
139_V	144_G	1.470	0.99
97_L	203_P	1.459	0.99
257_A	260_S	1.458	0.99
78_A	179_R	1.453	0.99
237_S	240_T	1.448	0.99
10_T	50_S	1.445	0.99
26_E	137_D	1.437	0.99
134_A	179_R	1.435	0.99
113_C	116_S	1.406	0.99
13_I	303_V	1.399	0.99
27_Q	31_N	1.399	0.99
198_P	201_V	1.398	0.99
241_A	245_L	1.395	0.99
205_Q	208_N	1.394	0.99
80_Y	134_A	1.383	0.99
24_E	28_Q	1.376	0.99
140_E	147_V	1.376	0.99
13_I	53_L	1.366	0.99
21_V	61_T	1.364	0.99
117_S	122_I	1.358	0.99
282_A	306_L	1.355	0.99
140_E	143_T	1.347	0.99
19_H	41_Q	1.334	0.98
80_Y	179_R	1.332	0.98
224_N	293_I	1.327	0.98
19_H	61_T	1.318	0.98
304_V	328_F	1.314	0.98
9_N	54_F	1.308	0.98
309_H	313_K	1.299	0.98
81_L	92_L	1.297	0.98
244_L	251_A	1.289	0.98
240_T	243_A	1.282	0.98
207_F	211_C	1.269	0.98
47_G	113_C	1.267	0.98
82_H	137_D	1.250	0.98
283_A	293_I	1.248	0.98
133_C	178_L	1.231	0.97
274_L	310_V	1.223	0.97
140_E	145_K	1.222	0.97
83_V	92_L	1.220	0.97
285_H	288_Q	1.217	0.97
44_L	58_Y	1.210	0.97
79_W	101_M	1.204	0.97
21_V	32_A	1.202	0.97
253_N	261_V	1.200	0.97
141_L	172_A	1.196	0.97
298_A	303_V	1.172	0.97
264_A	288_Q	1.162	0.96
92_L	104_L	1.154	0.96
139_V	146_Q	1.151	0.96
278_Q	281_G	1.151	0.96
311_R	321_W	1.145	0.96
196_L	216_T	1.140	0.96
104_L	178_L	1.121	0.96
242_K	245_L	1.114	0.95
13_I	282_A	1.114	0.95
8_W	20_I	1.113	0.95
45_I	172_A	1.111	0.95
308_H	311_R	1.110	0.95
299_K	302_D	1.109	0.95
42_P	59_R	1.108	0.95
148_R	177_G	1.104	0.95
139_V	143_T	1.103	0.95
53_L	326_V	1.100	0.95
43_V	63_I	1.099	0.95
241_A	251_A	1.095	0.95
241_A	261_V	1.093	0.95
282_A	303_V	1.090	0.95
97_L	204_Q	1.084	0.95
272_C	317_K	1.082	0.95
19_H	35_Y	1.081	0.95
196_L	212_H	1.080	0.95
11_F	53_L	1.080	0.95
215_T	220_D	1.075	0.94
189_T	194_T	1.074	0.94
90_H	94_K	1.067	0.94
292_L	306_L	1.065	0.94
133_C	176_V	1.062	0.94
36_A	43_V	1.062	0.94
201_V	205_Q	1.061	0.94
304_V	324_P	1.060	0.94
55_L	300_S	1.054	0.94
294_N	298_A	1.049	0.94
137_D	146_Q	1.047	0.94
32_A	36_A	1.042	0.93
211_C	215_T	1.034	0.93
266_G	288_Q	1.034	0.93
238_A	259_G	1.031	0.93
277_M	313_K	1.031	0.93
283_A	286_R	1.029	0.93
202_T	205_Q	1.027	0.93
53_L	282_A	1.025	0.93
26_E	67_I	1.024	0.93
238_A	258_D	1.016	0.93
95_Y	101_M	1.014	0.92
104_L	203_P	1.013	0.92
155_R	165_H	1.010	0.92
208_N	212_H	1.006	0.92
118_P	156_F	1.005	0.92
54_F	58_Y	1.002	0.92
137_D	177_G	0.999	0.92
117_S	129_L	0.991	0.92
301_E	305_Q	0.989	0.92
9_N	14_D	0.986	0.91
65_N	85_A	0.985	0.91
220_D	223_V	0.982	0.91
11_F	225_G	0.977	0.91
44_L	60_G	0.977	0.91
69_G	84_G	0.974	0.91
256_Q	260_S	0.973	0.91
201_V	206_V	0.973	0.91
25_D	28_Q	0.968	0.91
245_L	251_A	0.967	0.91
57_D	300_S	0.962	0.90
13_I	298_A	0.955	0.90
65_N	172_A	0.953	0.90
197_D	201_V	0.941	0.89
286_R	295_E	0.941	0.89
302_D	305_Q	0.935	0.89
307_A	324_P	0.934	0.89
96_T	101_M	0.930	0.89
243_A	247_Q	0.928	0.89
15_H	57_D	0.921	0.88
23_A	36_A	0.915	0.88
198_P	205_Q	0.910	0.88
285_H	291_V	0.909	0.88
67_I	87_E	0.900	0.87
313_K	316_E	0.894	0.87
155_R	160_D	0.886	0.86
83_V	178_L	0.886	0.86
6_K	9_N	0.884	0.86
70_I	87_E	0.880	0.86
274_L	284_V	0.878	0.86
26_E	146_Q	0.874	0.86
23_A	65_N	0.871	0.85
74_D	80_Y	0.869	0.85
5_L	17_A	0.862	0.85
215_T	223_V	0.856	0.84
240_T	319_N	0.853	0.84
102_P	203_P	0.850	0.84
109_L	211_C	0.843	0.83
94_K	97_L	0.843	0.83
92_L	96_T	0.840	0.83
30_L	34_Q	0.833	0.83
97_L	207_F	0.830	0.82
157_G	235_V	0.828	0.82
284_V	310_V	0.827	0.82
72_I	101_M	0.827	0.82
83_V	114_V	0.824	0.82
33_W	139_V	0.816	0.81
209_A	212_H	0.815	0.81
20_I	66_R	0.812	0.81
113_C	117_S	0.810	0.81
192_D	213_M	0.809	0.81
255_P	261_V	0.806	0.81
239_E	242_K	0.804	0.80
24_E	66_R	0.804	0.80
109_L	215_T	0.803	0.80
73_H	82_H	0.801	0.80
119_I	163_F	0.797	0.80
80_Y	177_G	0.796	0.80
141_L	169_D	0.795	0.80
280_G	302_D	0.787	0.79
234_P	265_A	0.785	0.79
94_K	98_Q	0.783	0.79
104_L	180_L	0.783	0.79
133_C	151_A	0.780	0.78
248_F	251_A	0.779	0.78
55_L	326_V	0.778	0.78
25_D	67_I	0.773	0.78
23_A	63_I	0.772	0.78
142_A	170_R	0.764	0.77
149_L	171_F	0.762	0.77
237_S	260_S	0.760	0.77
43_V	141_L	0.759	0.76
186_P	203_P	0.759	0.76
227_A	292_L	0.759	0.76
184_W	206_V	0.758	0.76
129_L	136_V	0.754	0.76
270_D	318_F	0.752	0.76
127_V	132_V	0.751	0.76
127_V	187_V	0.750	0.76
81_L	101_M	0.748	0.75
191_G	266_G	0.747	0.75
281_G	296_D	0.747	0.75
311_R	324_P	0.745	0.75
53_L	298_A	0.743	0.75
32_A	38_A	0.743	0.75
139_V	174_V	0.742	0.75
140_E	144_G	0.740	0.75
47_G	54_F	0.739	0.75
90_H	109_L	0.739	0.75
184_W	203_P	0.735	0.74
82_H	135_Y	0.734	0.74
270_D	289_A	0.732	0.74
33_W	141_L	0.726	0.73
129_L	132_V	0.726	0.73
23_A	172_A	0.724	0.73
23_A	29_L	0.722	0.73
11_F	284_V	0.717	0.72
252_P	326_V	0.716	0.72
196_L	209_A	0.712	0.72
52_V	227_A	0.710	0.72
104_L	127_V	0.708	0.71
271_Q	318_F	0.705	0.71
102_P	184_W	0.704	0.71
205_Q	209_A	0.703	0.71
79_W	182_K	0.703	0.71
90_H	211_C	0.701	0.71
87_E	92_L	0.701	0.71
89_W	122_I	0.697	0.70
224_N	285_H	0.697	0.70
284_V	292_L	0.696	0.70
75_E	80_Y	0.696	0.70
97_L	104_L	0.694	0.70
54_F	326_V	0.692	0.70
26_E	30_L	0.691	0.70
72_I	79_W	0.688	0.69
81_L	95_Y	0.687	0.69
79_W	184_W	0.687	0.69
81_L	96_T	0.685	0.69
53_L	324_P	0.684	0.69
188_L	193_L	0.682	0.69
23_A	32_A	0.681	0.68
94_K	108_A	0.679	0.68
84_G	175_A	0.678	0.68
72_I	99_E	0.678	0.68
18_Q	41_Q	0.677	0.68
168_Q	171_F	0.674	0.68
245_L	249_P	0.673	0.67
72_I	75_E	0.671	0.67
65_N	87_E	0.670	0.67
225_G	284_V	0.669	0.67
155_R	162_I	0.667	0.67
48_E	88_N	0.666	0.67
186_P	206_V	0.666	0.67
65_N	113_C	0.666	0.67
193_L	207_F	0.665	0.67
181_P	184_W	0.657	0.66
54_F	62_V	0.652	0.65
68_K	84_G	0.652	0.65
315_G	319_N	0.652	0.65
29_L	67_I	0.651	0.65
78_A	182_K	0.650	0.65
238_A	261_V	0.649	0.65
225_G	296_D	0.649	0.65
55_L	329_I	0.647	0.64
238_A	257_A	0.645	0.64
11_F	55_L	0.642	0.64
91_R	94_K	0.642	0.64
273_Q	319_N	0.641	0.64
162_I	166_E	0.639	0.63
46_L	62_V	0.639	0.63
281_G	295_E	0.639	0.63
11_F	310_V	0.639	0.63
36_A	61_T	0.638	0.63
312_Q	316_E	0.637	0.63
236_V	244_L	0.635	0.63
15_H	300_S	0.633	0.63
264_A	285_H	0.633	0.63
11_F	294_N	0.632	0.63
20_I	61_T	0.630	0.62
35_Y	39_E	0.625	0.62
102_P	183_E	0.624	0.62
127_V	266_G	0.623	0.62
130_Q	151_A	0.622	0.61
206_V	210_V	0.621	0.61
35_Y	41_Q	0.621	0.61
253_N	264_A	0.621	0.61
271_Q	317_K	0.620	0.61
108_A	211_C	0.619	0.61
156_F	232_K	0.617	0.61
92_L	129_L	0.616	0.61
107_L	127_V	0.614	0.60
193_L	196_L	0.614	0.60
78_A	206_V	0.613	0.60
186_P	205_Q	0.613	0.60
122_I	129_L	0.612	0.60
304_V	308_H	0.611	0.60
43_V	61_T	0.610	0.60
79_W	181_P	0.610	0.60
87_E	95_Y	0.609	0.60
244_L	263_L	0.605	0.59
37_T	43_V	0.604	0.59
245_L	250_T	0.602	0.59
13_I	292_L	0.599	0.59
35_Y	38_A	0.599	0.59
243_A	246_S	0.599	0.59
25_D	30_L	0.598	0.58
298_A	302_D	0.598	0.58
33_W	43_V	0.596	0.58
324_P	328_F	0.594	0.58
294_N	303_V	0.593	0.58
293_I	296_D	0.593	0.58
89_W	93_V	0.592	0.58
273_Q	293_I	0.592	0.58
160_D	270_D	0.591	0.58
270_D	275_K	0.591	0.58
122_I	218_L	0.590	0.57
71_E	84_G	0.589	0.57
191_G	288_Q	0.582	0.56
44_L	329_I	0.581	0.56
224_N	295_E	0.580	0.56
300_S	303_V	0.580	0.56
38_A	43_V	0.580	0.56
192_D	217_K	0.580	0.56
11_F	326_V	0.579	0.56
235_V	260_S	0.578	0.56
17_A	54_F	0.578	0.56
106_N	127_V	0.577	0.56
138_S	173_I	0.576	0.56
149_L	162_I	0.576	0.56
136_V	175_A	0.575	0.55
80_Y	182_K	0.573	0.55
166_E	170_R	0.572	0.55
310_V	316_E	0.571	0.55
282_A	285_H	0.570	0.55
282_A	307_A	0.567	0.54
83_V	108_A	0.564	0.54
32_A	63_I	0.564	0.54
9_N	48_E	0.564	0.54
282_A	294_N	0.563	0.54
61_T	173_I	0.562	0.54
75_E	101_M	0.561	0.54
288_Q	291_V	0.561	0.54
192_D	216_T	0.561	0.54
248_F	266_G	0.560	0.54
109_L	288_Q	0.557	0.53
199_T	205_Q	0.557	0.53
44_L	52_V	0.557	0.53
134_A	177_G	0.557	0.53
92_L	119_I	0.556	0.53
129_L	176_V	0.554	0.53
106_N	219_P	0.553	0.53
272_C	313_K	0.550	0.52
138_S	146_Q	0.550	0.52
30_L	146_Q	0.549	0.52
248_F	318_F	0.549	0.52
36_A	41_Q	0.549	0.52
162_I	171_F	0.547	0.52
305_Q	309_H	0.547	0.52
9_N	15_H	0.544	0.51
192_D	196_L	0.543	0.51
223_V	287_Q	0.543	0.51
264_A	320_V	0.542	0.51
70_I	99_E	0.542	0.51
81_L	136_V	0.541	0.51
73_H	177_G	0.541	0.51
312_Q	315_G	0.540	0.51
267_W	271_Q	0.539	0.51
292_L	303_V	0.539	0.51
31_N	34_Q	0.538	0.51
77_D	182_K	0.537	0.51
134_A	151_A	0.537	0.51
77_D	183_E	0.536	0.50
307_A	328_F	0.533	0.50
18_Q	58_Y	0.532	0.50
248_F	271_Q	0.531	0.50
15_H	55_L	0.530	0.50
264_A	289_A	0.529	0.50
18_Q	60_G	0.528	0.49
131_R	139_V	0.527	0.49
104_L	176_V	0.525	0.49
31_N	35_Y	0.525	0.49
109_L	291_V	0.524	0.49
217_K	275_K	0.523	0.49
92_L	95_Y	0.522	0.49
23_A	119_I	0.521	0.48
282_A	300_S	0.520	0.48
282_A	295_E	0.519	0.48
313_K	317_K	0.519	0.48
238_A	256_Q	0.519	0.48
252_P	318_F	0.518	0.48
37_T	40_G	0.518	0.48
279_I	283_A	0.518	0.48
29_L	65_N	0.517	0.48
30_L	139_V	0.515	0.48
34_Q	242_K	0.514	0.48
186_P	201_V	0.513	0.47
236_V	261_V	0.513	0.47
106_N	218_L	0.513	0.47
72_I	95_Y	0.512	0.47
27_Q	30_L	0.512	0.47
134_A	203_P	0.512	0.47
116_S	119_I	0.511	0.47
93_V	96_T	0.510	0.47
45_I	63_I	0.508	0.47
42_P	60_G	0.507	0.47
162_I	165_H	0.507	0.47
221_P	226_N	0.506	0.47
70_I	96_T	0.505	0.46
34_Q	144_G	0.505	0.46
308_H	312_Q	0.504	0.46
116_S	136_V	0.504	0.46
68_K	323_E	0.503	0.46
268_L	322_L	0.503	0.46
37_T	63_I	0.503	0.46
44_L	62_V	0.502	0.46
265_A	322_L	0.502	0.46
201_V	213_M	0.501	0.46
75_E	79_W	0.501	0.46
102_P	186_P	0.500	0.46

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3i99A	1	0.9766	100	0.323	Contact Map
4jb1A	1	0.9591	100	0.355	Contact Map
1uxyA	1	0.9942	100	0.384	Contact Map
2gqtA	1	0.7573	100	0.466	Contact Map
1hskA	1	0.8275	100	0.474	Contact Map
4pytA	1	0.8246	100	0.475	Contact Map
3tx1A	1	0.8158	100	0.533	Contact Map
1wvfA	2	0.883	99.9	0.814	Contact Map
1zr6A	1	0.9269	99.9	0.816	Contact Map
3rjaA	1	0.9386	99.9	0.818	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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