GREMLIN Database
RECC - RecBCD enzyme subunit RecC
UniProt: P07648 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10825
Length: 1122 (1051)
Sequences: 922 (681)
Seq/√Len: 21.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
397_L408_I10.3261.00
435_L659_V9.5511.00
144_D702_K7.7501.00
502_I527_G7.4151.00
379_C388_V6.7061.00
840_F1030_G6.6941.00
673_K725_Q5.8241.00
468_E866_D5.6411.00
680_M729_I5.5821.00
11_D724_Q5.0981.00
873_E876_S5.0131.00
486_T489_G4.7571.00
944_D951_Q4.7451.00
396_M726_K4.6531.00
582_R590_V4.6371.00
57_A60_I4.5921.00
591_C637_L4.4961.00
1033_A1104_A4.4441.00
332_D336_H4.4241.00
402_T673_K4.4031.00
497_V502_I4.3491.00
154_L170_K4.2521.00
984_H997_R4.1921.00
1077_G1083_G4.0651.00
396_M674_V4.0291.00
756_G777_K3.9201.00
97_T175_Y3.8961.00
307_G714_Y3.8171.00
980_L997_R3.7601.00
5_Y237_H3.7471.00
395_A399_E3.6711.00
409_I675_V3.6391.00
31_E209_S3.6211.00
33_E210_R3.6171.00
1041_S1084_E3.5931.00
570_Q598_F3.5321.00
843_H1087_D3.5221.00
592_R613_E3.4441.00
376_F752_I3.1831.00
729_I748_V3.1591.00
834_L986_V3.1581.00
422_I661_I3.1561.00
377_H784_H3.0750.99
752_I781_T3.0660.99
716_F748_V3.0500.99
26_L33_E2.9270.99
398_E802_Y2.8770.99
341_D346_E2.8600.99
441_D666_P2.8210.99
453_A599_F2.8140.99
433_R805_E2.7720.99
570_Q597_A2.7560.99
1026_G1112_F2.7380.99
17_M35_I2.7260.99
1104_A1108_Q2.6630.99
677_L680_M2.6590.98
720_L727_L2.6240.98
385_E730_S2.5540.98
687_R712_D2.5420.98
968_R976_Q2.5230.98
49_T52_Q2.5090.98
847_A851_M2.5000.98
502_I524_W2.4970.98
25_R210_R2.4790.98
680_M748_V2.4640.97
423_Q437_Y2.4460.97
95_L172_L2.4210.97
982_L1023_L2.4110.97
412_V415_I2.4030.97
875_L878_Y2.3680.97
464_R504_W2.3550.97
467_S497_V2.3510.97
793_N799_R2.3370.97
390_H659_V2.3280.96
950_V1028_R2.3110.96
531_M552_E2.3070.96
32_P61_D2.2940.96
333_N336_H2.2910.96
714_Y718_E2.2640.96
596_N741_E2.2250.95
227_L978_M2.2170.95
38_Q42_M2.2170.95
94_K175_Y2.2100.95
655_L660_N2.2070.95
376_F731_Y2.2020.95
1012_A1015_Q2.1970.95
677_L729_I2.1900.95
524_W527_G2.1880.95
1019_Y1022_Q2.1600.95
845_V849_F2.1520.94
124_L128_S2.1510.94
492_Y557_I2.1330.94
734_R783_L2.1310.94
574_W597_A2.0950.94
374_I755_I2.0810.93
100_P108_F2.0590.93
489_G563_H2.0560.93
106_E729_I2.0500.93
681_N684_V2.0340.93
942_E955_W2.0310.92
440_S660_N2.0170.92
41_G654_F2.0130.92
841_W982_L2.0050.92
504_W511_V2.0050.92
1017_L1024_I1.9840.92
846_R1087_D1.9830.92
35_I60_I1.9740.91
1037_V1113_L1.9690.91
68_F230_L1.9460.91
1030_G1035_L1.9400.91
1049_C1067_A1.9400.91
25_R33_E1.9210.90
15_A53_K1.9180.90
441_D667_M1.9100.90
1072_L1076_E1.9060.90
582_R586_E1.9030.90
245_R343_L1.8980.90
654_F666_P1.8960.90
1023_L1112_F1.8960.90
586_E589_P1.8890.89
984_H988_C1.8820.89
336_H755_I1.8750.89
662_C728_Y1.8600.89
215_G719_A1.8600.89
151_T236_I1.8530.88
378_V783_L1.8520.88
148_Q153_H1.8510.88
465_F510_N1.8460.88
1070_K1073_Q1.8360.88
596_N613_E1.8310.88
970_S973_S1.8290.88
835_E839_R1.8260.88
100_P103_L1.8220.88
377_H392_R1.8200.88
402_T725_Q1.8140.87
393_L397_L1.8070.87
42_M667_M1.8050.87
32_P59_N1.7990.87
247_Y716_F1.7910.87
338_I754_Y1.7680.86
1073_Q1078_N1.7630.86
674_V726_K1.7560.86
479_L567_L1.7550.86
331_P336_H1.7490.85
497_V565_A1.7440.85
20_I239_L1.7360.85
307_G718_E1.7250.85
20_I237_H1.7250.85
1067_A1071_F1.7160.84
497_V527_G1.7150.84
966_R983_E1.6980.84
1041_S1071_F1.6940.83
418_Y441_D1.6940.83
338_I374_I1.6880.83
785_T790_D1.6520.82
1015_Q1018_H1.6490.82
150_E188_N1.6480.82
838_Q983_E1.6410.81
716_F1089_W1.6260.81
415_I661_I1.6260.81
497_V524_W1.6230.81
70_W145_W1.6220.81
389_L393_L1.6220.81
525_R572_N1.6180.80
342_I1027_Y1.6150.80
676_C728_Y1.6140.80
842_A979_Q1.6110.80
888_L925_Q1.6100.80
1022_Q1111_R1.5990.80
843_H846_R1.5960.79
118_D123_K1.5920.79
296_G342_I1.5900.79
801_S807_L1.5890.79
158_L166_A1.5860.79
72_M226_A1.5820.79
247_Y598_F1.5760.79
1025_E1029_E1.5720.78
706_R711_D1.5550.78
1104_A1107_E1.5490.77
213_I236_I1.5470.77
5_Y10_L1.5450.77
441_D654_F1.5400.77
453_A476_V1.5390.77
18_E50_L1.5370.77
310_Y415_I1.5340.77
386_V678_L1.5290.76
836_T851_M1.5280.76
221_P716_F1.5240.76
1038_L1090_Y1.5200.76
193_F226_A1.5150.76
38_Q41_G1.5090.75
441_D714_Y1.5080.75
1110_Q1114_L1.5050.75
527_G870_F1.5010.75
244_C296_G1.4940.75
522_H663_T1.4910.75
474_L485_I1.4820.74
531_M550_Y1.4790.74
329_V340_S1.4700.73
655_L672_F1.4700.73
114_Y379_C1.4660.73
10_L655_L1.4620.73
392_R728_Y1.4600.73
249_G309_D1.4570.73
1114_L1118_R1.4530.73
46_L111_L1.4470.72
381_S736_I1.4340.72
842_A975_A1.4300.71
411_M670_I1.4260.71
439_I661_I1.4250.71
499_E550_Y1.4250.71
328_D340_S1.4200.71
26_L210_R1.4200.71
637_L800_Q1.4200.71
593_D597_A1.4140.70
94_K306_L1.4140.70
215_G441_D1.4070.70
91_M95_L1.4020.70
661_I694_F1.4020.70
388_V784_H1.4010.70
511_V1036_L1.3990.70
1040_E1084_E1.3970.70
460_L578_L1.3960.69
171_A174_E1.3910.69
1029_E1033_A1.3900.69
105_R171_A1.3880.69
418_Y666_P1.3860.69
385_E418_Y1.3830.69
583_P631_A1.3810.69
653_R656_A1.3730.68
322_E641_L1.3730.68
735_S738_D1.3720.68
136_D186_R1.3710.68
338_I755_I1.3670.68
947_C1024_I1.3650.68
14_E49_T1.3640.68
215_G667_M1.3610.67
507_D572_N1.3560.67
95_L98_L1.3560.67
297_N754_Y1.3550.67
1044_A1047_K1.3510.67
197_L662_C1.3460.67
142_R705_D1.3460.67
38_Q136_D1.3440.66
212_F239_L1.3430.66
414_D467_S1.3410.66
492_Y495_Q1.3410.66
105_R167_P1.3410.66
348_R758_S1.3310.66
809_A928_A1.3290.66
628_Y632_V1.3290.66
850_Q856_N1.3280.65
41_G706_R1.3270.65
70_W81_P1.3270.65
1044_A1074_A1.3260.65
75_R945_L1.3240.65
148_Q155_V1.3230.65
42_M62_F1.3210.65
160_E163_A1.3210.65
16_L216_I1.3190.65
412_V663_T1.3190.65
583_P586_E1.3190.65
133_D136_D1.3160.65
186_R193_F1.3150.65
72_M1039_P1.3150.65
653_R660_N1.3120.65
143_P146_L1.3050.64
243_P248_W1.3020.64
413_A511_V1.2980.64
248_W706_R1.2950.63
95_L848_F1.2950.63
849_F1089_W1.2940.63
38_Q718_E1.2940.63
377_H388_V1.2920.63
131_A382_P1.2890.63
193_F680_M1.2850.63
981_W984_H1.2810.63
76_V326_F1.2800.63
1096_Q1099_P1.2790.62
131_A135_F1.2760.62
91_M172_L1.2720.62
573_I597_A1.2710.62
882_Q886_N1.2690.62
612_I1007_R1.2680.62
166_A722_S1.2670.62
125_F849_F1.2670.62
378_V733_G1.2670.62
215_G666_P1.2650.62
138_Y165_Q1.2640.62
753_D867_T1.2630.61
133_D186_R1.2570.61
2_L238_L1.2550.61
383_Q421_F1.2530.61
578_L598_F1.2480.61
975_A1040_E1.2470.60
245_R344_E1.2450.60
397_L403_L1.2450.60
289_S439_I1.2430.60
978_M1113_L1.2410.60
253_D256_Y1.2340.60
502_I732_I1.2330.60
311_I623_G1.2300.59
849_F1093_L1.2300.59
12_V327_V1.2290.59
39_S308_R1.2290.59
73_F190_Y1.2280.59
213_I443_R1.2240.59
457_L598_F1.2230.59
242_N248_W1.2180.59
217_S718_E1.2150.58
653_R685_Y1.2130.58
481_A580_Q1.2050.58
666_P687_R1.2050.58
660_N850_Q1.2030.58
72_M75_R1.2030.58
641_L722_S1.2000.57
150_E185_H1.1980.57
99_L111_L1.1980.57
442_R701_P1.1940.57
250_D300_L1.1920.57
654_F672_F1.1910.57
35_I399_E1.1910.57
799_R802_Y1.1910.57
1071_F1084_E1.1900.57
376_F780_L1.1880.57
172_L197_L1.1870.57
480_A487_E1.1850.56
659_V831_T1.1840.56
141_Y694_F1.1830.56
30_F720_L1.1810.56
106_E112_R1.1790.56
154_L376_F1.1770.56
832_V954_G1.1760.56
469_D881_N1.1750.56
390_H393_L1.1710.56
42_M662_C1.1660.55
38_Q694_F1.1650.55
70_W80_I1.1630.55
895_E948_N1.1630.55
219_L227_L1.1610.55
530_R534_G1.1610.55
440_S787_M1.1600.55
190_Y222_V1.1580.55
508_D512_R1.1560.55
546_S932_I1.1530.54
220_P697_M1.1510.54
408_I899_R1.1510.54
217_S664_L1.1490.54
465_F575_R1.1430.54
368_D762_P1.1390.53
483_F570_Q1.1370.53
1077_G1084_E1.1370.53
972_L1001_R1.1370.53
339_Q724_Q1.1340.53
989_A1017_L1.1330.53
174_E673_K1.1310.53
242_N697_M1.1310.53
186_R249_G1.1300.53
845_V1093_L1.1290.53
400_D673_K1.1290.53
567_L749_Q1.1290.53
9_R14_E1.1290.53
409_I664_L1.1280.53
985_L1020_L1.1270.53
584_L623_G1.1250.53
654_F662_C1.1240.52
837_L840_F1.1240.52
340_S344_E1.1220.52
888_L928_A1.1150.52
113_H484_D1.1140.52
2_L56_I1.1140.52
755_I1042_G1.1120.52
61_D71_D1.1100.52
509_D1018_H1.1050.51
519_T522_H1.1050.51
2_L17_M1.1040.51
69_I655_L1.1030.51
411_M441_D1.1030.51
135_F794_Y1.1010.51
242_N326_F1.0980.51
334_L780_L1.0960.51
131_A447_S1.0950.51
785_T792_Q1.0930.50
987_Y992_G1.0920.50
1013_A1017_L1.0900.50
40_T64_L1.0880.50
664_L720_L1.0860.50
167_P171_A1.0850.50
45_W687_R1.0840.50
461_P578_L1.0810.50
730_S745_S1.0800.50
1100_E1104_A1.0800.50
133_D137_Q1.0790.49
330_T340_S1.0780.49
350_V832_V1.0780.49
91_M408_I1.0770.49
413_A464_R1.0760.49
469_D627_Q1.0750.49
695_D709_R1.0690.49
332_D797_G1.0670.49
242_N311_I1.0650.49
123_K471_L1.0640.48
461_P638_R1.0610.48
415_I441_D1.0610.48
1075_Y1090_Y1.0600.48
5_Y59_N1.0580.48
220_P746_V1.0570.48
253_D305_K1.0560.48
107_D167_P1.0550.48
21_V493_L1.0540.48
416_D685_Y1.0540.48
2_L1071_F1.0530.48
451_L455_I1.0530.48
838_Q979_Q1.0530.48
96_M124_L1.0530.48
86_F247_Y1.0530.48
784_H910_G1.0520.48
2_L567_L1.0520.48
80_I675_V1.0500.48
15_A485_I1.0490.47
824_L827_T1.0490.47
122_R639_D1.0470.47
70_W84_S1.0460.47
660_N685_Y1.0460.47
8_N127_L1.0430.47
68_F670_I1.0420.47
441_D718_E1.0400.47
787_M1105_I1.0400.47
6_H242_N1.0380.47
674_V1002_K1.0380.47
86_F909_Y1.0330.46
559_E563_H1.0320.46
748_V1073_Q1.0280.46
345_L391_D1.0220.46
1015_Q1118_R1.0190.45
507_D908_P1.0160.45
235_E750_E1.0150.45
36_L68_F1.0150.45
56_I609_M1.0140.45
166_A249_G1.0130.45
62_F207_L1.0120.45
192_R481_A1.0120.45
471_L522_H1.0090.45
1104_A1117_F1.0080.45
411_M654_F1.0050.45
878_Y976_Q1.0050.45
334_L1016_A1.0040.45
838_Q982_L1.0040.45
1048_T1070_K1.0040.45
46_L407_D1.0010.44
135_F533_L1.0000.44
1032_S1083_G0.9990.44
687_R715_L0.9980.44
652_Q665_M0.9940.44
340_S346_E0.9940.44
41_G666_P0.9920.44
144_D965_L0.9900.44
411_M687_R0.9880.43
247_Y250_D0.9860.43
251_I345_L0.9850.43
588_L592_R0.9850.43
378_V781_T0.9840.43
288_N948_N0.9830.43
706_R709_R0.9790.43
167_P170_K0.9780.43
77_L145_W0.9770.43
137_Q672_F0.9760.43
4_V855_V0.9760.43
38_Q670_I0.9740.43
846_R1089_W0.9710.42
39_S216_I0.9710.42
940_S1094_W0.9700.42
296_G345_L0.9650.42
1071_F1075_Y0.9640.42
10_L56_I0.9630.42
33_E41_G0.9630.42
216_I241_T0.9630.42
883_Q906_D0.9630.42
305_K710_D0.9620.42
236_I488_E0.9610.42
341_D418_Y0.9600.42
411_M666_P0.9600.42
251_I301_A0.9580.42
1037_V1108_Q0.9570.41
166_A170_K0.9560.41
1088_I1110_Q0.9560.41
62_F641_L0.9540.41
155_V162_Q0.9510.41
41_G65_P0.9500.41
42_M908_P0.9500.41
306_L711_D0.9480.41
110_L698_S0.9480.41
437_Y481_A0.9470.41
653_R806_W0.9460.41
140_V186_R0.9460.41
415_I664_L0.9460.41
1037_V1105_I0.9450.41
215_G654_F0.9440.41
663_T678_L0.9430.41
441_D687_R0.9430.41
827_T876_S0.9430.41
375_T728_Y0.9420.40
298_P873_E0.9410.40
672_F715_L0.9410.40
41_G215_G0.9370.40
756_G775_R0.9360.40
462_D638_R0.9360.40
411_M875_L0.9340.40
952_I1048_T0.9340.40
88_K133_D0.9330.40
425_V868_E0.9310.40
847_A1031_M0.9310.40
109_T112_R0.9310.40
244_C904_A0.9310.40
124_L630_D0.9300.40
298_P347_N0.9300.40
385_E679_G0.9300.40
139_L185_H0.9290.40
374_I925_Q0.9290.40
100_P124_L0.9290.40
519_T660_N0.9290.40
729_I982_L0.9290.40
409_I662_C0.9280.40
102_L171_A0.9280.40
440_S591_C0.9280.40
720_L971_L0.9270.40
144_D485_I0.9270.40
664_L729_I0.9260.39
782_C895_E0.9230.39
236_I321_Q0.9220.39
64_L220_P0.9220.39
218_A238_L0.9210.39
1045_W1067_A0.9190.39
536_A1030_G0.9180.39
220_P227_L0.9170.39
952_I1119_F0.9170.39
418_Y732_I0.9160.39
1045_W1105_I0.9140.39
161_A699_Q0.9110.39
785_T793_N0.9110.39
220_P342_I0.9090.38
418_Y672_F0.9080.38
411_M905_G0.9070.38
11_D802_Y0.9060.38
634_L638_R0.9050.38
667_M905_G0.9020.38
240_F413_A0.9020.38
4_V148_Q0.9020.38
407_D872_L0.9010.38
380_H739_N0.9010.38
448_H793_N0.9010.38
645_L880_I0.8990.38
5_Y16_L0.8980.38
60_I885_L0.8980.38
1077_G1090_Y0.8970.38
845_V1090_Y0.8970.38
135_F515_E0.8950.38
6_H311_I0.8950.38
336_H388_V0.8950.38
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672_F681_N0.5040.18
34_M440_S0.5040.18
313_L697_M0.5030.17
61_D748_V0.5030.17
1051_D1054_N0.5030.17
344_E943_I0.5030.17
569_M861_D0.5020.17
110_L630_D0.5020.17
449_P1035_L0.5020.17
244_C339_Q0.5020.17
641_L750_E0.5020.17
618_A836_T0.5010.17
813_A1024_I0.5010.17
725_Q898_F0.5010.17
438_A735_S0.5000.17
902_R913_G0.5000.17
931_V967_W0.5000.17
617_Q895_E0.5000.17
791_P861_D0.5000.17
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3u4qB 1 0.8164 100 0.89 Contact Map
3lfuA 1 0.5258 100 0.91 Contact Map
1uaaA 2 0.5339 100 0.914 Contact Map
4c2uA 1 0.5419 100 0.915 Contact Map
4c2tA 1 0.541 99.9 0.928 Contact Map
1pjrA 1 0.5134 99.9 0.933 Contact Map
3u4qA 1 0.7861 99.8 0.943 Contact Map
3dmnA 1 0.1435 97.5 0.976 Contact Map
3h4rA 3 0.164 89.1 0.985 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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