THGA - ECOLI - GREMLIN Contacts

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THGA - Galactoside O-acetyltransferase

UniProt:	P07464	Sequences: MNMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRDKHYYFKDYKVESSV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10524
Length:	203 (179)
Sequences:	4248 (3065)
Seq/√Len:	229.1

ECOLI - THGA MAA WCAF WBBJ CAIE YRDA PAAY WCAB
BACSU - MAA EPSM YVOF DAPH CYSE YTOA
HALSA - Q9HNN1 Q9HQ06 Q9HPT3
SULSO - Q980E1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
90_I	96_V	4.262	1.00
110_L	132_I	3.427	1.00
155_N	171_N	3.227	1.00
135_G	154_D	2.986	1.00
81_N	101_N	2.897	1.00
87_N	107_N	2.635	1.00
154_D	170_P	2.593	1.00
159_G	175_A	2.573	1.00
25_K	74_S	2.542	1.00
136_N	154_D	2.525	1.00
77_H	97_T	2.522	1.00
147_N	160_A	2.499	1.00
57_T	77_H	2.403	1.00
168_I	174_A	2.402	1.00
111_S	142_S	2.300	1.00
175_A	182_I	2.297	1.00
80_R	100_D	2.293	1.00
43_E	46_K	2.190	1.00
140_I	146_I	2.117	1.00
156_S	170_P	2.050	1.00
137_N	155_N	2.018	1.00
34_Y	38_H	1.980	1.00
97_T	133_T	1.864	1.00
156_S	172_V	1.854	1.00
34_Y	41_P	1.845	1.00
93_D	129_S	1.811	1.00
158_I	168_I	1.807	1.00
78_I	82_F	1.791	1.00
101_N	137_N	1.761	1.00
59_G	80_R	1.758	1.00
48_E	52_K	1.721	1.00
133_T	151_T	1.667	1.00
77_H	95_T	1.615	1.00
110_L	134_I	1.614	1.00
94_Y	129_S	1.607	1.00
58_V	62_A	1.569	1.00
32_L	53_E	1.549	1.00
140_I	144_V	1.541	1.00
156_S	168_I	1.509	1.00
117_V	157_V	1.499	1.00
104_I	110_L	1.491	1.00
82_F	100_D	1.465	1.00
172_V	184_E	1.456	1.00
100_D	136_N	1.455	1.00
28_R	32_L	1.448	1.00
123_K	137_N	1.434	1.00
174_A	179_C	1.419	1.00
61_N	81_N	1.418	1.00
117_V	173_V	1.385	1.00
31_T	42_S	1.382	1.00
158_I	174_A	1.347	1.00
172_V	181_V	1.338	1.00
151_T	167_D	1.336	1.00
31_T	40_H	1.310	1.00
118_H	121_L	1.303	1.00
79_G	100_D	1.302	1.00
7_E	11_A	1.300	1.00
162_S	179_C	1.272	1.00
89_T	107_N	1.271	1.00
46_K	49_S	1.267	1.00
56_A	77_H	1.260	1.00
84_A	88_L	1.256	1.00
135_G	151_T	1.240	1.00
82_F	102_V	1.224	1.00
65_E	83_Y	1.200	1.00
35_E	40_H	1.194	1.00
98_I	104_I	1.183	1.00
70_F	76_I	1.166	1.00
109_T	143_H	1.152	1.00
62_A	78_I	1.150	1.00
29_G	54_M	1.144	1.00
34_Y	40_H	1.133	1.00
147_N	165_T	1.130	1.00
181_V	184_E	1.118	1.00
109_T	142_S	1.111	1.00
169_P	181_V	1.103	1.00
78_I	84_A	1.098	1.00
135_G	156_S	1.097	1.00
29_G	33_M	1.086	1.00
52_K	58_V	1.082	1.00
51_I	55_F	1.080	1.00
50_L	54_M	1.048	1.00
169_P	174_A	1.044	1.00
144_V	162_S	1.042	1.00
60_E	80_R	1.034	1.00
104_I	140_I	1.031	1.00
36_F	51_I	1.019	1.00
76_I	90_I	1.013	1.00
114_G	130_F	1.013	1.00
162_S	177_V	1.004	1.00
84_A	104_I	0.997	1.00
20_E	24_E	0.987	1.00
163_I	177_V	0.987	1.00
61_N	80_R	0.985	1.00
14_L	128_Y	0.978	1.00
78_I	98_I	0.976	1.00
102_V	136_N	0.973	1.00
134_I	140_I	0.971	1.00
99_G	136_N	0.959	1.00
14_L	126_E	0.957	1.00
82_F	136_N	0.956	1.00
109_T	145_V	0.953	1.00
110_L	146_I	0.946	1.00
84_A	90_I	0.943	1.00
98_I	134_I	0.936	1.00
102_V	154_D	0.925	1.00
114_G	128_Y	0.918	1.00
107_N	143_H	0.917	1.00
98_I	110_L	0.904	0.99
68_V	76_I	0.897	0.99
169_P	172_V	0.885	0.99
154_D	171_N	0.879	0.99
119_H	122_R	0.876	0.99
49_S	53_E	0.874	0.99
35_E	46_K	0.873	0.99
173_V	185_I	0.859	0.99
76_I	96_V	0.855	0.99
32_L	54_M	0.843	0.99
174_A	181_V	0.843	0.99
138_V	154_D	0.842	0.99
138_V	170_P	0.840	0.99
157_V	173_V	0.840	0.99
108_V	144_V	0.833	0.99
55_F	59_G	0.827	0.99
146_I	152_I	0.825	0.99
39_S	46_K	0.814	0.99
73_G	76_I	0.812	0.99
112_V	131_P	0.799	0.99
120_E	124_N	0.798	0.99
32_L	50_L	0.796	0.99
30_K	65_E	0.781	0.98
114_G	117_V	0.780	0.98
152_I	167_D	0.780	0.98
152_I	174_A	0.769	0.98
71_S	93_D	0.756	0.98
69_Y	86_F	0.753	0.98
36_F	66_P	0.745	0.98
113_T	129_S	0.736	0.98
47_R	66_P	0.735	0.98
39_S	47_R	0.730	0.98
121_L	126_E	0.728	0.98
172_V	175_A	0.728	0.98
35_E	53_E	0.725	0.98
93_D	113_T	0.725	0.98
28_R	53_E	0.724	0.98
22_L	26_R	0.716	0.97
30_K	86_F	0.714	0.97
171_N	184_E	0.709	0.97
31_T	35_E	0.708	0.97
152_I	168_I	0.706	0.97
58_V	80_R	0.706	0.97
40_H	43_E	0.705	0.97
140_I	152_I	0.704	0.97
137_N	154_D	0.704	0.97
56_A	59_G	0.702	0.97
102_V	138_V	0.694	0.97
104_I	108_V	0.693	0.97
121_L	124_N	0.692	0.97
62_A	82_F	0.690	0.97
69_Y	87_N	0.684	0.96
82_F	104_I	0.684	0.96
135_G	170_P	0.679	0.96
161_G	177_V	0.679	0.96
104_I	134_I	0.677	0.96
45_E	49_S	0.675	0.96
14_L	121_L	0.671	0.96
134_I	146_I	0.668	0.96
167_D	174_A	0.667	0.96
13_K	16_T	0.665	0.96
82_F	98_I	0.665	0.96
85_N	103_L	0.664	0.96
28_R	31_T	0.660	0.96
73_G	92_D	0.658	0.96
168_I	179_C	0.656	0.96
158_I	179_C	0.656	0.96
10_R	94_Y	0.649	0.95
21_G	24_E	0.649	0.95
98_I	102_V	0.645	0.95
39_S	50_L	0.645	0.95
101_N	123_K	0.643	0.95
16_T	124_N	0.643	0.95
59_G	62_A	0.643	0.95
134_I	138_V	0.642	0.95
25_K	28_R	0.641	0.95
23_P	26_R	0.641	0.95
85_N	139_W	0.638	0.95
24_E	27_L	0.635	0.95
97_T	131_P	0.629	0.94
115_H	139_W	0.627	0.94
113_T	127_M	0.624	0.94
28_R	74_S	0.624	0.94
173_V	183_R	0.618	0.94
55_F	58_V	0.618	0.94
58_V	78_I	0.613	0.94
145_V	160_A	0.603	0.93
63_W	83_Y	0.598	0.93
31_T	34_Y	0.597	0.93
26_R	65_E	0.596	0.93
27_L	44_V	0.596	0.93
38_H	41_P	0.596	0.93
109_T	132_I	0.595	0.93
82_F	99_G	0.587	0.92
33_M	70_F	0.587	0.92
21_G	25_K	0.583	0.92
57_T	78_I	0.579	0.92
99_G	133_T	0.578	0.92
83_Y	103_L	0.575	0.91
68_V	88_L	0.575	0.91
106_P	142_S	0.575	0.91
155_N	170_P	0.575	0.91
54_M	70_F	0.574	0.91
175_A	179_C	0.571	0.91
116_P	121_L	0.569	0.91
144_V	174_A	0.566	0.91
85_N	115_H	0.566	0.91
46_K	50_L	0.566	0.91
117_V	183_R	0.562	0.90
108_V	140_I	0.561	0.90
145_V	163_I	0.560	0.90
138_V	156_S	0.560	0.90
91_V	113_T	0.553	0.90
112_V	148_P	0.552	0.90
132_I	148_P	0.551	0.90
88_L	108_V	0.551	0.90
79_G	82_F	0.551	0.90
90_I	110_L	0.550	0.89
10_R	95_T	0.549	0.89
78_I	102_V	0.548	0.89
159_G	165_T	0.548	0.89
24_E	28_R	0.547	0.89
177_V	182_I	0.545	0.89
114_G	148_P	0.544	0.89
105_A	135_G	0.544	0.89
26_R	29_G	0.544	0.89
22_L	25_K	0.542	0.89
142_S	145_V	0.541	0.89
88_L	104_I	0.539	0.89
101_N	125_G	0.538	0.88
27_L	30_K	0.536	0.88
175_A	180_R	0.536	0.88
85_N	91_V	0.533	0.88
32_L	35_E	0.533	0.88
119_H	171_N	0.532	0.88
132_I	150_V	0.531	0.88
95_T	133_T	0.529	0.88
18_M	26_R	0.527	0.87
131_P	151_T	0.523	0.87
81_N	100_D	0.520	0.87
64_V	84_A	0.519	0.87
29_G	32_L	0.516	0.86
22_L	74_S	0.514	0.86
36_F	39_S	0.514	0.86
44_V	48_E	0.513	0.86
15_F	113_T	0.511	0.86
35_E	39_S	0.511	0.86
75_N	95_T	0.509	0.86
8_R	19_C	0.507	0.85
39_S	43_E	0.507	0.85
17_D	125_G	0.507	0.85
111_S	145_V	0.505	0.85
117_V	185_I	0.505	0.85
116_P	122_R	0.505	0.85
75_N	92_D	0.504	0.85
159_G	173_V	0.503	0.85
50_L	53_E	0.503	0.85
119_H	123_K	0.503	0.85
30_K	72_Y	0.500	0.85
105_A	151_T	0.500	0.85

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1krrA	3	0.9852	100	0.266	Contact Map
3fttA	3	0.9212	100	0.287	Contact Map
3srtA	3	0.9212	100	0.291	Contact Map
3nz2A	4	0.9113	100	0.293	Contact Map
3hjjA	3	0.9212	100	0.299	Contact Map
2p2oA	3	0.9064	100	0.303	Contact Map
1ocxA	3	0.8966	100	0.328	Contact Map
3vbiA	3	0.7783	100	0.484	Contact Map
4g3qA	3	0.9901	100	0.493	Contact Map
2v0hA	3	0.9113	100	0.5	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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