GREMLIN Database
YFIB - Putative lipoprotein YfiB
UniProt: P07021 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11152
Length: 160 (142)
Sequences: 9077 (6884)
Seq/√Len: 577.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
59_N100_Y3.5001.00
57_A64_L3.3441.00
89_D132_L3.3091.00
141_N146_G3.0571.00
105_S131_G2.9311.00
132_L136_Y2.6961.00
95_Y147_R2.6941.00
103_G107_K2.6671.00
72_Q119_G2.6401.00
58_K95_Y2.6361.00
139_A146_G2.6251.00
106_L110_N2.5661.00
71_I115_A2.3881.00
91_H136_Y2.3451.00
72_Q115_A2.2711.00
61_Y107_K2.2111.00
102_E106_L2.1811.00
113_A129_T2.1551.00
140_S146_G1.9551.00
139_A149_E1.8651.00
88_M153_V1.7741.00
98_D134_K1.7631.00
89_D156_V1.7591.00
143_T146_G1.6701.00
110_N113_A1.6221.00
98_D135_K1.5881.00
102_E135_K1.5151.00
141_N147_R1.5121.00
115_A119_G1.5021.00
94_N147_R1.4261.00
63_L115_A1.3881.00
65_P68_Q1.3811.00
117_A127_L1.3721.00
113_A117_A1.3481.00
113_A127_L1.3371.00
88_M113_A1.3251.00
87_R128_T1.2911.00
100_Y103_G1.2871.00
123_P126_N1.2851.00
63_L67_S1.2841.00
110_N114_D1.2471.00
87_R130_Q1.2231.00
57_A60_D1.2191.00
142_K146_G1.2141.00
100_Y134_K1.1961.00
86_A127_L1.1781.00
70_Q73_T1.1751.00
110_N129_T1.1571.00
91_H137_P1.1231.00
58_K93_D1.1151.00
122_I127_L1.0751.00
89_D136_Y1.0671.00
89_D130_Q1.0461.00
75_A116_W1.0441.00
91_H154_A1.0441.00
122_I126_N1.0371.00
76_A79_A1.0311.00
85_H128_T1.0231.00
93_D101_N1.0211.00
68_Q115_A1.0201.00
117_A124_R1.0171.00
94_N141_N1.0071.00
25_K29_E1.0051.00
115_A118_M1.0011.00
58_K100_Y0.9881.00
76_A80_S0.9821.00
64_L67_S0.9591.00
69_Q73_T0.9531.00
19_C22_P0.9511.00
113_A124_R0.9501.00
97_E100_Y0.9421.00
137_P150_N0.9391.00
24_G27_T0.9351.00
79_A122_I0.9281.00
75_A120_G0.9261.00
11_F15_I0.9231.00
114_D118_M0.9141.00
9_L13_S0.9131.00
55_L67_S0.9121.00
49_G154_A0.9071.00
63_L111_V0.9041.00
81_T84_T0.9031.00
58_K96_G0.8981.00
25_K28_P0.8851.00
94_N142_K0.8831.00
69_Q72_Q0.8801.00
96_G99_S0.8731.00
75_A119_G0.8711.00
42_S45_D0.8691.00
28_P31_V0.8661.00
94_N134_K0.8631.00
23_Q26_F0.8621.00
143_T147_R0.8561.00
106_L129_T0.8531.00
67_S70_Q0.8361.00
61_Y104_L0.8351.00
146_G149_E0.8341.00
56_F153_V0.8281.00
140_S143_T0.8251.00
109_A131_G0.8141.00
77_K81_T0.8061.00
12_T15_I0.8051.00
61_Y111_V0.8051.00
17_T20_Q0.8021.00
23_Q27_T0.8011.00
44_G47_S0.7961.00
100_Y107_K0.7871.00
112_V153_V0.7811.00
27_T30_Q0.7801.00
68_Q72_Q0.7781.00
114_D117_A0.7721.00
94_N146_G0.7701.00
138_I149_E0.7691.00
91_H152_R0.7691.00
103_G106_L0.7641.00
106_L131_G0.7631.00
74_M155_V0.7611.00
145_Q149_E0.7591.00
63_L68_Q0.7551.00
96_G101_N0.7501.00
47_S154_A0.7501.00
12_T16_L0.7481.00
56_F90_G0.7481.00
107_K110_N0.7461.00
11_F14_L0.7431.00
75_A122_I0.7421.00
137_P147_R0.7411.00
79_A123_P0.7381.00
89_D154_A0.7301.00
45_D49_G0.7281.00
47_S156_V0.7201.00
13_S17_T0.7141.00
56_F112_V0.7141.00
87_R156_V0.7101.00
25_K30_Q0.7091.00
94_N150_N0.7021.00
43_A46_W0.7011.00
71_I116_W0.6971.00
97_E134_K0.6951.00
71_I112_V0.6941.00
27_T31_V0.6941.00
72_Q76_A0.6941.00
142_K147_R0.6931.00
61_Y103_G0.6921.00
26_F30_Q0.6881.00
95_Y144_A0.6871.00
94_N137_P0.6841.00
88_M109_A0.6841.00
24_G28_P0.6831.00
86_A155_V0.6821.00
90_G153_V0.6721.00
22_P27_T0.6701.00
143_T150_N0.6701.00
99_S103_G0.6701.00
78_L86_A0.6621.00
144_A147_R0.6561.00
22_P25_K0.6501.00
26_F29_E0.6481.00
91_H135_K0.6471.00
139_A150_N0.6341.00
58_K101_N0.6311.00
95_Y100_Y0.6251.00
111_V114_D0.6201.00
106_L130_Q0.6181.00
75_A79_A0.6161.00
26_F31_V0.6151.00
10_V14_L0.6111.00
49_G52_D0.6101.00
22_P26_F0.6051.00
45_D48_L0.6041.00
98_D133_G0.6021.00
73_T77_K0.5881.00
64_L148_A0.5801.00
139_A147_R0.5801.00
73_T76_A0.5791.00
25_K31_V0.5781.00
74_M78_L0.5771.00
137_P141_N0.5741.00
7_A10_V0.5731.00
77_K84_T0.5701.00
15_I18_G0.5691.00
66_E69_Q0.5610.99
20_Q25_K0.5570.99
46_W50_L0.5570.99
11_F17_T0.5530.99
88_M155_V0.5530.99
18_G21_S0.5470.99
75_A115_A0.5470.99
91_H132_L0.5460.99
88_M127_L0.5450.99
57_A62_K0.5430.99
55_L148_A0.5410.99
95_Y134_K0.5390.99
8_P11_F0.5350.99
7_A11_F0.5340.99
109_A129_T0.5330.99
103_G134_K0.5310.99
55_L138_I0.5310.99
24_G30_Q0.5280.99
18_G22_P0.5270.99
42_S46_W0.5250.99
24_G29_E0.5240.99
17_T22_P0.5220.99
116_W122_I0.5200.99
43_A47_S0.5190.99
16_L19_C0.5130.99
8_P12_T0.5100.99
102_E134_K0.5080.99
96_G100_Y0.5060.99
23_Q30_Q0.5040.99
100_Y104_L0.5040.99
15_I19_C0.5020.99
144_A148_A0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ldtA 2 0.8688 100 0.229 Contact Map
2l26A 1 0.9812 100 0.271 Contact Map
2k1sA 1 0.8812 100 0.272 Contact Map
2hqsH 1 0.675 100 0.277 Contact Map
1r1mA 1 0.7438 100 0.277 Contact Map
3s06A 3 0.8625 100 0.289 Contact Map
2aizP 1 0.8375 100 0.295 Contact Map
3oonA 2 0.7 100 0.296 Contact Map
3s0yA 4 0.9563 100 0.297 Contact Map
2kgwA 1 0.8063 100 0.297 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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