GREMLIN Database
MCP2 - Methyl-accepting chemotaxis protein II
UniProt: P07017 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10988
Length: 553 (504)
Sequences: 19963 (17191)
Seq/√Len: 765.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
243_G248_G3.5821.00
335_A338_G3.5821.00
6_R9_T3.3301.00
229_E234_N3.1521.00
145_N148_A2.6461.00
229_E237_N2.4821.00
351_E425_R2.4341.00
27_S31_S2.4091.00
10_L245_S2.3261.00
328_A338_G2.2791.00
238_T262_T2.2711.00
192_W196_V2.2701.00
355_S425_R2.2681.00
224_I249_D2.2661.00
333_D337_H2.2201.00
255_S258_Q2.1651.00
214_R218_T2.1541.00
228_R249_D2.1521.00
228_R256_H2.1041.00
267_H505_R2.0901.00
354_D357_K2.0861.00
358_K361_D2.0731.00
223_I251_A2.0591.00
355_S421_D2.0391.00
139_D143_Y2.0131.00
224_I253_S1.9961.00
189_F193_Q1.9891.00
340_K344_G1.9701.00
213_R217_L1.9551.00
316_Q319_D1.9461.00
255_S259_R1.9381.00
108_K124_D1.9361.00
227_I257_M1.9041.00
228_R232_G1.8861.00
498_A501_E1.8731.00
364_S368_G1.8491.00
427_D431_V1.8381.00
245_S248_G1.8351.00
230_I257_M1.8291.00
227_I254_V1.8251.00
188_R192_W1.8191.00
136_E139_D1.8011.00
238_T259_R1.7921.00
330_S333_D1.7871.00
230_I258_Q1.7761.00
361_D364_S1.7561.00
416_K420_E1.7501.00
353_A430_S1.7231.00
360_A423_V1.7231.00
26_G198_A1.7171.00
287_T291_S1.7151.00
121_R125_E1.7141.00
351_E354_D1.6871.00
238_T255_S1.6811.00
470_Q473_L1.6671.00
249_D252_Q1.6641.00
135_T139_D1.6551.00
431_V435_S1.6481.00
449_R452_D1.6471.00
228_R253_S1.6461.00
101_A105_K1.6281.00
10_L215_M1.6191.00
326_Q330_S1.6191.00
477_E480_R1.6171.00
329_Q333_D1.6151.00
347_K350_H1.6151.00
91_D95_K1.6071.00
410_Q414_E1.6051.00
443_I454_M1.6031.00
408_S412_A1.5991.00
118_A122_N1.5981.00
195_A199_L1.5941.00
505_R508_Q1.5911.00
196_V200_V1.5871.00
440_M443_I1.5851.00
340_K343_D1.5831.00
170_L174_K1.5831.00
102_T106_K1.5801.00
163_E167_Q1.5781.00
448_T452_D1.5731.00
321_A324_A1.5651.00
326_Q329_Q1.5641.00
87_V91_D1.5561.00
238_T258_Q1.5481.00
438_E442_N1.5461.00
504_S508_Q1.5341.00
57_W60_M1.5231.00
406_S410_Q1.5231.00
501_E505_R1.5231.00
223_I250_L1.5201.00
403_N406_S1.5201.00
263_D267_H1.5171.00
323_Q326_Q1.5171.00
277_A281_E1.5061.00
469_D473_L1.5011.00
262_T266_T1.5011.00
28_L32_S1.4871.00
348_T428_T1.4851.00
420_E424_S1.4841.00
367_D416_K1.4821.00
438_E441_N1.4811.00
334_T442_N1.4591.00
358_K414_E1.4561.00
89_L92_S1.4551.00
413_K417_A1.4511.00
288_D291_S1.4491.00
227_I253_S1.4371.00
122_N126_K1.4351.00
356_S426_V1.4321.00
491_E494_A1.4261.00
181_T185_D1.4221.00
136_E140_Y1.4221.00
188_R191_Q1.4211.00
105_K109_S1.4141.00
61_L64_R1.4051.00
191_Q195_A1.4041.00
354_D358_K1.4021.00
487_S491_E1.4001.00
442_N445_N1.3921.00
445_N449_R1.3891.00
18_F205_L1.3861.00
84_N88_E1.3821.00
298_S302_E1.3811.00
105_K108_K1.3801.00
224_I228_R1.3751.00
88_E91_D1.3751.00
302_E305_A1.3721.00
350_H354_D1.3641.00
507_T511_S1.3611.00
138_I142_D1.3601.00
319_D323_Q1.3581.00
441_N445_N1.3471.00
299_A477_E1.3471.00
221_A224_I1.3431.00
8_V12_V1.3421.00
117_V121_R1.3391.00
139_D142_D1.3391.00
308_E312_A1.3231.00
410_Q413_K1.3191.00
424_S428_T1.3091.00
480_R484_Q1.3091.00
355_S358_K1.3081.00
241_I255_S1.3061.00
350_H434_E1.3031.00
298_S301_E1.3031.00
177_R181_T1.3021.00
462_D466_R1.3011.00
180_V184_A1.3011.00
322_R326_Q1.2981.00
234_N237_N1.2961.00
223_I254_V1.2951.00
260_S512_A1.2871.00
332_S336_Q1.2771.00
174_K178_D1.2751.00
269_R273_D1.2651.00
125_E129_N1.2641.00
209_W213_R1.2621.00
24_I28_L1.2621.00
497_A501_E1.2621.00
353_A427_D1.2611.00
115_E118_A1.2611.00
92_S96_T1.2591.00
187_Y191_Q1.2591.00
309_Q312_A1.2591.00
192_W195_A1.2581.00
173_E177_R1.2521.00
324_A454_M1.2461.00
292_R481_V1.2451.00
124_D128_K1.2411.00
450_V454_M1.2401.00
227_I250_L1.2381.00
69_R73_R1.2361.00
399_G402_R1.2361.00
349_M429_G1.2341.00
381_A399_G1.2321.00
229_E232_G1.2281.00
270_E274_A1.2261.00
259_R263_D1.2241.00
232_G256_H1.2241.00
41_V45_Q1.2221.00
431_V434_E1.2211.00
487_S490_Q1.2211.00
133_A136_E1.2191.00
222_K240_T1.2181.00
490_Q494_A1.2171.00
267_H509_A1.2141.00
358_K421_D1.2141.00
270_E273_D1.2131.00
328_A331_A1.2121.00
84_N87_V1.2111.00
328_A335_A1.2061.00
179_I182_D1.2061.00
154_T158_Q1.2051.00
414_E417_A1.2001.00
225_A228_R1.1971.00
284_A288_D1.1971.00
241_I251_A1.1941.00
357_K427_D1.1941.00
8_V214_R1.1931.00
90_L93_A1.1921.00
509_A512_A1.1901.00
6_R249_D1.1901.00
348_T429_G1.1881.00
347_K351_E1.1881.00
122_N125_E1.1871.00
260_S263_D1.1851.00
351_E355_S1.1831.00
239_L255_S1.1831.00
5_I9_T1.1811.00
32_S35_H1.1811.00
62_Q65_I1.1801.00
74_M77_D1.1791.00
116_M119_T1.1751.00
226_H239_L1.1751.00
480_R483_Q1.1751.00
119_T123_I1.1721.00
222_K225_A1.1661.00
365_V411_A1.1661.00
291_S295_Q1.1631.00
333_D336_Q1.1631.00
280_R284_A1.1581.00
353_A357_K1.1541.00
140_Y145_N1.1501.00
193_Q196_V1.1491.00
164_A167_Q1.1451.00
106_K109_S1.1451.00
443_I450_V1.1411.00
31_S35_H1.1391.00
499_L513_F1.1371.00
153_P156_G1.1311.00
291_S294_E1.1261.00
152_Q156_G1.1261.00
334_T337_H1.1241.00
223_I227_I1.1241.00
436_A440_M1.1201.00
29_F194_L1.1171.00
72_V76_M1.1171.00
315_K319_D1.1171.00
92_S95_K1.1161.00
295_Q298_S1.1151.00
37_Q187_Y1.1131.00
102_T105_K1.1121.00
417_A421_D1.1061.00
281_E284_A1.1051.00
337_H340_K1.0981.00
56_T59_L1.0961.00
413_K416_K1.0941.00
483_Q487_S1.0931.00
221_A249_D1.0921.00
68_S72_V1.0921.00
334_T338_G1.0901.00
207_V211_G1.0871.00
294_E298_S1.0861.00
508_Q511_S1.0801.00
428_T431_V1.0791.00
128_K132_T1.0711.00
29_F33_L1.0681.00
341_V346_V1.0661.00
273_D277_A1.0661.00
222_K226_H1.0651.00
172_S175_L1.0641.00
221_A225_A1.0581.00
121_R124_D1.0571.00
476_S480_R1.0561.00
421_D425_R1.0551.00
7_V247_M1.0541.00
65_I69_R1.0521.00
174_K177_R1.0511.00
319_D322_R1.0501.00
118_A121_R1.0491.00
344_G347_K1.0471.00
114_P117_V1.0461.00
331_A338_G1.0441.00
88_E92_S1.0421.00
317_N461_S1.0411.00
85_A88_E1.0381.00
8_V213_R1.0381.00
83_S87_V1.0361.00
64_R68_S1.0331.00
258_Q262_T1.0291.00
463_E466_R1.0251.00
343_D347_K1.0241.00
99_Q102_T1.0241.00
26_G30_F1.0221.00
126_K129_N1.0211.00
132_T135_T1.0191.00
166_A170_L1.0191.00
58_D62_Q1.0171.00
481_V485_N1.0171.00
66_N69_R1.0161.00
217_L221_A1.0161.00
185_D189_F1.0151.00
409_A413_K1.0141.00
352_I429_G1.0141.00
8_V217_L1.0121.00
251_A255_S1.0101.00
362_I418_L1.0091.00
30_F34_H1.0091.00
484_Q487_S1.0091.00
358_K418_L1.0061.00
83_S86_K1.0061.00
367_D412_A1.0051.00
501_E504_S1.0051.00
256_H259_R1.0041.00
273_D507_T1.0031.00
161_M164_A1.0021.00
336_Q340_K0.9961.00
145_N149_Y0.9951.00
210_Y214_R0.9941.00
19_A205_L0.9931.00
341_V435_S0.9931.00
178_D182_D0.9921.00
74_M78_S0.9891.00
132_T136_E0.9881.00
67_L70_S0.9861.00
134_L138_I0.9851.00
35_H39_S0.9851.00
381_A402_R0.9841.00
348_T432_L0.9841.00
64_R67_L0.9831.00
67_L71_A0.9821.00
12_V16_G0.9821.00
312_A316_Q0.9791.00
466_R470_Q0.9741.00
206_L210_Y0.9731.00
224_I250_L0.9701.00
367_D371_F0.9701.00
339_G343_D0.9681.00
267_H270_E0.9671.00
407_R410_Q0.9671.00
466_R469_D0.9661.00
504_S507_T0.9651.00
90_L94_R0.9641.00
473_L477_E0.9641.00
252_Q255_S0.9621.00
21_L201_V0.9611.00
160_A163_E0.9571.00
494_A498_A0.9571.00
72_V77_D0.9541.00
225_A229_E0.9541.00
159_N163_E0.9531.00
241_I252_Q0.9531.00
417_A420_E0.9531.00
141_L145_N0.9511.00
508_Q512_A0.9481.00
63_T66_N0.9481.00
184_A188_R0.9471.00
60_M64_R0.9451.00
199_L203_L0.9431.00
274_A498_A0.9411.00
295_Q299_A0.9291.00
459_S463_E0.9271.00
15_L209_W0.9261.00
327_L331_A0.9261.00
168_Y172_S0.9251.00
256_H260_S0.9251.00
324_A338_G0.9241.00
120_S124_D0.9231.00
85_A89_L0.9211.00
73_R76_M0.9201.00
226_H237_N0.9201.00
322_R462_D0.9181.00
325_S329_Q0.9171.00
235_L261_L0.9151.00
437_G441_N0.9151.00
230_I254_V0.9151.00
368_G407_R0.9131.00
284_A287_T0.9131.00
34_H191_Q0.9121.00
239_L251_A0.9121.00
97_L100_A0.9121.00
244_R248_G0.9111.00
215_M219_P0.9071.00
226_H229_E0.9071.00
219_P243_G0.9071.00
220_L250_L0.9041.00
315_K469_D0.9041.00
71_A74_M0.9031.00
156_G160_A0.9031.00
510_V513_F0.9031.00
247_M251_A0.9021.00
276_Y280_R0.9021.00
61_L65_I0.8991.00
70_S73_R0.8981.00
341_V344_G0.8921.00
125_E128_K0.8921.00
445_N448_T0.8901.00
266_T270_E0.8861.00
436_A443_I0.8851.00
189_F192_W0.8841.00
470_Q474_A0.8821.00
155_Q159_N0.8811.00
424_S427_D0.8811.00
306_S309_Q0.8791.00
127_Y130_Y0.8791.00
169_A172_S0.8791.00
305_A309_Q0.8781.00
211_G214_R0.8781.00
108_K111_A0.8781.00
229_E257_M0.8781.00
114_P118_A0.8761.00
54_T58_D0.8731.00
336_Q448_T0.8711.00
268_V510_V0.8701.00
141_L144_G0.8691.00
452_D455_G0.8691.00
218_T222_K0.8651.00
60_M68_S0.8651.00
459_S462_D0.8641.00
59_L62_Q0.8631.00
65_I68_S0.8621.00
115_E119_T0.8601.00
32_S36_S0.8581.00
218_T221_A0.8561.00
473_L476_S0.8551.00
240_T255_S0.8541.00
58_D61_L0.8531.00
40_F43_S0.8531.00
241_I245_S0.8521.00
368_G371_F0.8461.00
113_L116_M0.8441.00
352_I422_S0.8431.00
288_D292_R0.8421.00
119_T122_N0.8381.00
456_E459_S0.8381.00
351_E428_T0.8371.00
339_G346_V0.8361.00
220_L247_M0.8351.00
467_G471_V0.8331.00
440_M454_M0.8251.00
332_S335_A0.8231.00
86_K89_L0.8231.00
169_A173_E0.8221.00
346_V437_G0.8201.00
349_M433_V0.8201.00
310_L317_N0.8201.00
99_Q103_H0.8191.00
494_A497_A0.8181.00
350_H353_A0.8151.00
277_A280_R0.8131.00
131_Y135_T0.8121.00
399_G403_N0.8111.00
335_A444_V0.8071.00
305_A308_E0.8041.00
219_P247_M0.8011.00
301_E305_A0.8011.00
266_T269_R0.8001.00
5_I13_M0.7991.00
137_L141_L0.7991.00
497_A500_E0.7961.00
437_G440_M0.7951.00
170_L173_E0.7951.00
356_S422_S0.7951.00
140_Y144_G0.7941.00
479_D483_Q0.7931.00
167_Q170_L0.7931.00
500_E504_S0.7931.00
286_N489_V0.7931.00
55_S58_D0.7911.00
97_L101_A0.7911.00
330_S334_T0.7911.00
150_F154_T0.7891.00
367_D413_K0.7881.00
96_T99_Q0.7881.00
468_I472_A0.7871.00
100_A103_H0.7861.00
280_R500_E0.7851.00
455_G459_S0.7851.00
308_E472_A0.7831.00
34_H38_K0.7811.00
357_K361_D0.7801.00
91_D94_R0.7781.00
469_D472_A0.7781.00
231_A256_H0.7781.00
299_A302_E0.7771.00
506_L513_F0.7771.00
62_Q66_N0.7731.00
160_A164_A0.7731.00
182_D186_D0.7711.00
25_S29_F0.7701.00
40_F44_N0.7671.00
265_V268_V0.7671.00
279_T496_A0.7641.00
42_V46_L0.7641.00
226_H254_V0.7641.00
361_D365_V0.7631.00
142_D146_T0.7611.00
136_E153_P0.7601.00
103_H106_K0.7581.00
95_K99_Q0.7561.00
318_A321_A0.7561.00
276_Y507_T0.7551.00
123_I127_Y0.7541.00
505_R509_A0.7541.00
363_I416_K0.7531.00
344_G435_S0.7501.00
296_Q310_L0.7501.00
30_F191_Q0.7501.00
104_Y107_F0.7491.00
175_L179_I0.7471.00
234_N514_R0.7461.00
320_N324_A0.7451.00
232_G260_S0.7451.00
216_L219_P0.7441.00
343_D441_N0.7421.00
243_G247_M0.7411.00
263_D266_T0.7411.00
103_H107_F0.7401.00
254_V257_M0.7401.00
345_V433_V0.7361.00
38_K41_V0.7341.00
18_F22_Q0.7341.00
236_A515_L0.7321.00
33_L36_S0.7301.00
15_L18_F0.7291.00
485_N489_V0.7291.00
154_T161_M0.7271.00
349_M430_S0.7271.00
407_R414_E0.7261.00
106_K110_M0.7241.00
426_V429_G0.7241.00
502_Q505_R0.7241.00
76_M79_S0.7231.00
452_D456_E0.7221.00
324_A328_A0.7201.00
37_Q41_V0.7201.00
213_R216_L0.7201.00
39_S42_V0.7201.00
227_I230_I0.7161.00
14_V21_L0.7151.00
503_A513_F0.7151.00
74_M141_L0.7131.00
157_M160_A0.7111.00
34_H37_Q0.7111.00
31_S34_H0.7091.00
423_V427_D0.7091.00
499_L503_A0.7081.00
363_I367_D0.7071.00
28_L31_S0.7051.00
150_F153_P0.7031.00
73_R77_D0.6991.00
40_F183_N0.6991.00
312_A315_K0.6991.00
161_M165_F0.6981.00
167_Q171_S0.6971.00
193_Q197_I0.6951.00
306_S310_L0.6951.00
486_A489_V0.6941.00
19_A209_W0.6931.00
168_Y171_S0.6901.00
14_V18_F0.6861.00
171_S174_K0.6841.00
7_V220_L0.6831.00
458_A461_S0.6821.00
167_Q174_K0.6821.00
300_L303_T0.6791.00
181_T184_A0.6781.00
140_Y148_A0.6781.00
444_V448_T0.6761.00
237_N258_Q0.6731.00
436_A439_T0.6731.00
44_N47_R0.6711.00
144_G147_G0.6681.00
304_A307_M0.6671.00
52_E55_S0.6671.00
421_D424_S0.6661.00
361_D414_E0.6651.00
36_S40_F0.6651.00
342_V346_V0.6651.00
281_E491_E0.6631.00
112_P115_E0.6611.00
429_G433_V0.6611.00
362_I419_I0.6581.00
241_I248_G0.6561.00
151_A154_T0.6551.00
327_L330_S0.6521.00
93_A97_L0.6521.00
71_A75_M0.6481.00
75_M78_S0.6481.00
425_R428_T0.6471.00
156_G161_M0.6471.00
371_F409_A0.6451.00
117_V120_S0.6431.00
487_S494_A0.6421.00
32_S190_A0.6401.00
314_V317_N0.6401.00
296_Q303_T0.6391.00
296_Q307_M0.6381.00
492_S495_A0.6361.00
126_K164_A0.6351.00
9_T12_V0.6341.00
346_V350_H0.6341.00
303_T307_M0.6331.00
274_A277_A0.6331.00
142_D145_N0.6321.00
271_G274_A0.6311.00
310_L314_V0.6301.00
296_Q299_A0.6281.00
449_R453_I0.6281.00
215_M218_T0.6281.00
122_N164_A0.6251.00
257_M261_L0.6241.00
356_S362_I0.6231.00
463_E467_G0.6221.00
471_V475_V0.6211.00
296_Q306_S0.6201.00
420_E423_V0.6191.00
334_T446_A0.6181.00
231_A253_S0.6171.00
183_N187_Y0.6161.00
217_L247_M0.6151.00
203_L207_V0.6141.00
254_V258_Q0.6131.00
362_I411_A0.6131.00
42_V45_Q0.6121.00
321_A325_S0.6121.00
12_V213_R0.6121.00
352_I355_S0.6111.00
318_A324_A0.6111.00
63_T67_L0.6081.00
108_K121_R0.6061.00
140_Y143_Y0.6051.00
292_R296_Q0.6051.00
175_L178_D0.6041.00
289_L293_T0.6041.00
378_L386_R0.6021.00
348_T425_R0.6011.00
68_S71_A0.6011.00
230_I261_L0.6011.00
119_T127_Y0.6001.00
43_S46_L0.6001.00
324_A331_A0.5991.00
158_Q162_G0.5991.00
461_S464_Q0.5991.00
272_S276_Y0.5981.00
337_H442_N0.5971.00
184_A187_Y0.5971.00
186_D189_F0.5961.00
266_T515_L0.5961.00
464_Q471_V0.5941.00
258_Q261_L0.5901.00
30_F194_L0.5901.00
328_A334_T0.5891.00
127_Y131_Y0.5891.00
338_G443_I0.5871.00
53_L57_W0.5871.00
310_L468_I0.5851.00
153_P157_M0.5841.00
375_I382_V0.5831.00
299_A474_A0.5831.00
364_S367_D0.5811.00
472_A476_S0.5801.00
269_R507_T0.5801.00
176_Y179_I0.5791.00
275_I499_L0.5781.00
339_G345_V0.5771.00
264_T267_H0.5771.00
226_H230_I0.5761.00
22_Q25_S0.5761.00
289_L292_R0.5761.00
295_Q477_E0.5751.00
359_I419_I0.5741.00
205_L209_W0.5731.00
23_L26_G0.5721.00
374_N402_R0.5671.00
119_T124_D0.5671.00
307_M475_V0.5661.00
336_Q339_G0.5651.00
173_E176_Y0.5641.00
101_A131_Y0.5641.00
104_Y108_K0.5621.00
405_A408_S0.5611.00
37_Q184_A0.5611.00
144_G148_A0.5611.00
372_Q400_E0.5601.00
269_R511_S0.5601.00
275_I502_Q0.5601.00
124_D127_Y0.5601.00
268_V506_L0.5601.00
362_I365_V0.5601.00
66_N70_S0.5591.00
299_A306_S0.5561.00
108_K112_P0.5561.00
126_K130_Y0.5561.00
489_V496_A0.5551.00
60_M63_T0.5531.00
59_L63_T0.5521.00
55_S59_L0.5511.00
371_F382_V0.5511.00
408_S418_L0.5511.00
17_V24_I0.5511.00
265_V515_L0.5511.00
19_A22_Q0.5501.00
207_V210_Y0.5501.00
311_T472_A0.5491.00
491_E495_A0.5491.00
488_L491_E0.5481.00
61_L74_M0.5471.00
439_T443_I0.5461.00
53_L56_T0.5461.00
248_G252_Q0.5451.00
311_T314_V0.5441.00
7_V216_L0.5431.00
447_V454_M0.5431.00
38_K42_V0.5411.00
223_I226_H0.5391.00
182_D185_D0.5381.00
186_D190_A0.5381.00
144_G149_Y0.5371.00
39_S43_S0.5371.00
236_A514_R0.5361.00
426_V430_S0.5361.00
172_S176_Y0.5351.00
310_L324_A0.5331.00
228_R231_A0.5311.00
8_V221_A0.5311.00
163_E166_A0.5301.00
43_S47_R0.5301.00
344_G348_T0.5301.00
166_A169_A0.5281.00
133_A137_L0.5281.00
352_I426_V0.5271.00
120_S123_I0.5261.00
327_L449_R0.5261.00
86_K93_A0.5251.00
112_P116_M0.5231.00
302_E470_Q0.5221.00
93_A96_T0.5211.00
123_I130_Y0.5211.00
134_L137_L0.5201.00
300_L478_M0.5181.00
51_G54_T0.5171.00
9_T13_M0.5161.00
69_R72_V0.5161.00
301_E479_D0.5161.00
233_G264_T0.5161.00
200_V204_I0.5141.00
288_D484_Q0.5141.00
390_Q401_V0.5131.00
329_Q332_S0.5131.00
257_M260_S0.5131.00
235_L265_V0.5121.00
14_V205_L0.5121.00
11_L15_L0.5121.00
119_T171_S0.5121.00
52_E56_T0.5121.00
332_S451_T0.5101.00
72_V75_M0.5091.00
318_A458_A0.5091.00
131_Y134_L0.5081.00
377_A402_R0.5071.00
33_L37_Q0.5061.00
429_G432_L0.5031.00
332_S448_T0.5031.00
146_T149_Y0.5011.00
334_T439_T0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zx6A 2 0.5479 100 0.355 Contact Map
1qu7A 2 0.4105 100 0.512 Contact Map
2ch7A 2 0.528 100 0.553 Contact Map
3g67A 2 0.3852 100 0.598 Contact Map
4i3mA 2 0.2658 99.9 0.745 Contact Map
4cq4A 4 0.1555 99.5 0.836 Contact Map
2f95B 2 0.0922 99.4 0.848 Contact Map
4gycB 2 0.1067 99.3 0.858 Contact Map
3zccA 2 0.1899 98.9 0.878 Contact Map
4i5sA 2 0.5732 98.4 0.896 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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