PROA - ECOLI - GREMLIN Contacts

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PROA - Gamma-glutamyl phosphate reductase

UniProt:	P07004	Sequences: MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10767
Length:	417 (385)
Sequences:	38413 (22879)
Seq/√Len:	1166.0

ECOLI - PROA PUUC ALDB GABD BETB ALDA FEAB ABDH EUTE ASTD SAD PUTA PAAZ ADHE
BACSU - ROCA PROA ROCA2 ALDH4 ALDH1 ALDH5 IOLA GABD ALDY BETB ALDH2 ALDH3
HALSA - Q9HQZ2 Q9HMJ6 Q9HRB5 Q9HR91
SULSO - Q97YT9 KGSDH GAPN Q97XS9 Q97XA5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
263_K	324_S	5.406	1.00
263_K	322_I	3.287	1.00
266_A	322_I	3.229	1.00
236_A	272_A	3.190	1.00
231_E	262_N	2.836	1.00
10_K	193_Y	2.783	1.00
231_E	264_N	2.782	1.00
240_K	276_Q	2.765	1.00
154_A	157_A	2.738	1.00
346_T	352_A	2.700	1.00
38_Q	41_I	2.680	1.00
36_E	81_R	2.642	1.00
270_L	320_V	2.619	1.00
291_L	295_Q	2.598	1.00
31_I	159_I	2.425	1.00
302_V	306_A	2.352	1.00
10_K	195_D	2.350	1.00
354_R	358_E	2.273	1.00
160_Q	170_A	2.222	1.00
39_S	74_K	2.183	1.00
326_L	351_N	2.167	1.00
303_A	307_E	2.167	1.00
227_I	242_I	2.105	1.00
274_S	278_A	2.093	1.00
110_V	406_K	2.071	1.00
34_E	165_S	2.059	1.00
232_S	351_N	2.044	1.00
298_P	302_V	2.033	1.00
337_G	383_E	2.033	1.00
29_E	81_R	2.007	1.00
41_I	154_A	2.003	1.00
109_R	400_E	1.959	1.00
260_L	332_H	1.926	1.00
268_S	272_A	1.926	1.00
109_R	403_T	1.925	1.00
34_E	37_A	1.904	1.00
27_V	168_L	1.901	1.00
326_L	354_R	1.864	1.00
34_E	158_V	1.858	1.00
207_K	383_E	1.849	1.00
7_I	193_Y	1.839	1.00
324_S	328_D	1.835	1.00
260_L	329_A	1.824	1.00
186_E	190_M	1.819	1.00
309_Y	321_K	1.819	1.00
190_M	212_Q	1.814	1.00
208_L	211_E	1.807	1.00
20_S	23_E	1.806	1.00
262_N	323_V	1.802	1.00
360_D	382_A	1.785	1.00
40_E	70_P	1.745	1.00
156_V	175_A	1.691	1.00
247_T	277_M	1.690	1.00
230_D	351_N	1.687	1.00
342_D	361_S	1.683	1.00
328_D	331_A	1.668	1.00
241_V	345_L	1.665	1.00
33_D	37_A	1.655	1.00
266_A	270_L	1.655	1.00
80_V	131_S	1.653	1.00
45_A	154_A	1.646	1.00
259_L	318_L	1.643	1.00
231_E	351_N	1.625	1.00
13_S	17_A	1.619	1.00
272_A	275_K	1.616	1.00
30_K	33_D	1.589	1.00
271_P	275_K	1.589	1.00
23_E	26_R	1.578	1.00
139_A	172_A	1.568	1.00
262_N	325_D	1.567	1.00
260_L	323_V	1.563	1.00
235_I	272_A	1.557	1.00
18_Q	358_E	1.557	1.00
327_D	358_E	1.536	1.00
40_E	44_N	1.533	1.00
276_Q	279_E	1.532	1.00
267_D	322_I	1.522	1.00
239_L	272_A	1.516	1.00
227_I	256_V	1.513	1.00
108_R	357_N	1.510	1.00
242_I	269_F	1.500	1.00
3_E	187_M	1.491	1.00
3_E	7_I	1.469	1.00
38_Q	165_S	1.450	1.00
44_N	48_Q	1.448	1.00
300_K	313_F	1.436	1.00
3_E	191_D	1.429	1.00
261_V	269_F	1.426	1.00
230_D	323_V	1.423	1.00
36_E	77_A	1.422	1.00
210_R	386_V	1.416	1.00
328_D	332_H	1.411	1.00
268_S	271_P	1.398	1.00
302_V	305_K	1.390	1.00
34_E	166_C	1.389	1.00
294_L	298_P	1.384	1.00
196_M	218_I	1.383	1.00
117_V	140_V	1.381	1.00
38_Q	154_A	1.377	1.00
242_I	259_L	1.371	1.00
281_G	289_A	1.371	1.00
86_L	89_P	1.371	1.00
80_V	128_D	1.364	1.00
180_D	183_L	1.363	1.00
356_V	408_I	1.332	1.00
323_V	332_H	1.325	1.00
19_L	23_E	1.323	1.00
13_S	139_A	1.322	1.00
327_D	354_R	1.319	1.00
275_K	278_A	1.313	1.00
33_D	81_R	1.299	1.00
32_A	36_E	1.293	1.00
275_K	279_E	1.292	1.00
265_I	268_S	1.292	1.00
127_V	142_L	1.290	1.00
269_F	273_L	1.281	1.00
397_M	400_E	1.273	1.00
325_D	328_D	1.270	1.00
156_V	173_V	1.269	1.00
230_D	355_F	1.269	1.00
330_I	355_F	1.263	1.00
44_N	286_A	1.262	1.00
208_L	212_Q	1.259	1.00
159_I	173_V	1.256	1.00
291_L	294_L	1.256	1.00
171_G	174_Q	1.251	1.00
267_D	271_P	1.250	1.00
30_K	34_E	1.240	1.00
39_S	70_P	1.240	1.00
270_L	274_S	1.240	1.00
8_A	171_G	1.238	1.00
295_Q	299_A	1.237	1.00
42_I	154_A	1.234	1.00
6_G	191_D	1.225	1.00
297_G	315_S	1.225	1.00
284_L	287_D	1.220	1.00
352_A	366_V	1.219	1.00
228_Y	329_A	1.214	1.00
272_A	276_Q	1.208	1.00
8_A	174_Q	1.206	1.00
47_A	285_H	1.198	1.00
273_L	318_L	1.197	1.00
262_N	265_I	1.195	1.00
31_I	158_V	1.194	1.00
106_E	353_Q	1.193	1.00
234_E	347_R	1.188	1.00
396_P	400_E	1.186	1.00
6_G	193_Y	1.185	1.00
157_A	165_S	1.171	1.00
19_L	27_V	1.167	1.00
112_L	196_M	1.165	1.00
299_A	303_A	1.163	1.00
29_E	85_N	1.162	1.00
342_D	364_V	1.161	1.00
224_V	257_E	1.157	1.00
109_R	405_Y	1.154	1.00
7_I	11_Q	1.154	1.00
117_V	198_I	1.149	1.00
48_Q	150_R	1.148	1.00
153_A	177_D	1.146	1.00
237_E	347_R	1.141	1.00
348_D	351_N	1.135	1.00
243_V	276_Q	1.131	1.00
310_D	337_G	1.124	1.00
205_L	208_L	1.121	1.00
116_G	194_I	1.118	1.00
38_Q	158_V	1.117	1.00
6_G	194_I	1.116	1.00
310_D	335_E	1.113	1.00
31_I	80_V	1.111	1.00
287_D	290_A	1.101	1.00
330_I	358_E	1.100	1.00
44_N	54_R	1.097	1.00
187_M	191_D	1.096	1.00
122_R	252_T	1.094	1.00
327_D	331_A	1.092	1.00
14_Y	331_A	1.092	1.00
234_E	237_E	1.092	1.00
232_S	348_D	1.088	1.00
228_Y	355_F	1.088	1.00
146_K	180_D	1.082	1.00
210_R	217_V	1.080	1.00
130_A	173_V	1.075	1.00
204_G	208_L	1.073	1.00
326_L	355_F	1.071	1.00
146_K	182_A	1.070	1.00
31_I	168_L	1.069	1.00
54_R	70_P	1.069	1.00
93_V	396_P	1.067	1.00
21_S	25_N	1.056	1.00
42_I	158_V	1.055	1.00
227_I	345_L	1.055	1.00
12_A	139_A	1.053	1.00
397_M	405_Y	1.050	1.00
305_K	308_E	1.049	1.00
106_E	410_I	1.043	1.00
228_Y	333_I	1.042	1.00
245_A	256_V	1.039	1.00
330_I	334_R	1.037	1.00
230_D	262_N	1.031	1.00
207_K	211_E	1.030	1.00
36_E	74_K	1.025	1.00
108_R	408_I	1.025	1.00
323_V	329_A	1.021	1.00
300_K	303_A	1.013	1.00
283_T	290_A	1.012	1.00
112_L	216_P	1.011	1.00
93_V	397_M	1.011	1.00
379_G	388_T	1.005	1.00
41_I	44_N	1.001	1.00
38_Q	157_A	0.999	1.00
246_K	257_E	0.992	1.00
130_A	140_V	0.990	1.00
388_T	404_T	0.987	1.00
343_A	369_S	0.987	1.00
210_R	214_T	0.986	1.00
14_Y	360_D	0.985	1.00
297_G	317_D	0.985	1.00
235_I	239_L	0.982	1.00
195_D	360_D	0.981	1.00
115_I	196_M	0.980	1.00
153_A	175_A	0.979	1.00
226_H	342_D	0.979	1.00
29_E	33_D	0.976	1.00
114_V	194_I	0.976	1.00
381_G	404_T	0.974	1.00
37_A	165_S	0.971	1.00
114_V	139_A	0.966	1.00
298_P	301_V	0.965	1.00
186_E	208_L	0.957	1.00
14_Y	18_Q	0.954	1.00
47_A	69_T	0.953	1.00
331_A	335_E	0.950	1.00
26_R	30_K	0.950	1.00
303_A	306_A	0.950	1.00
321_K	332_H	0.949	1.00
25_N	29_E	0.945	1.00
216_P	404_T	0.945	1.00
186_E	212_Q	0.943	1.00
36_E	39_S	0.942	1.00
237_E	241_V	0.935	1.00
239_L	276_Q	0.931	1.00
353_Q	357_N	0.929	1.00
232_S	346_T	0.929	1.00
236_A	268_S	0.928	1.00
17_A	360_D	0.927	1.00
329_A	332_H	0.925	1.00
304_V	308_E	0.925	1.00
230_D	326_L	0.923	1.00
202_G	205_L	0.921	1.00
10_K	14_Y	0.919	1.00
16_L	172_A	0.914	1.00
110_V	381_G	0.912	1.00
50_V	148_T	0.912	1.00
238_A	242_I	0.912	1.00
34_E	38_Q	0.912	1.00
153_A	157_A	0.906	1.00
76_I	128_D	0.904	1.00
105_L	376_G	0.903	1.00
9_A	174_Q	0.903	1.00
342_D	359_V	0.902	1.00
267_D	270_L	0.902	1.00
310_D	336_H	0.902	1.00
156_V	160_Q	0.900	1.00
181_R	185_S	0.893	1.00
18_Q	357_N	0.892	1.00
48_Q	286_A	0.892	1.00
225_C	257_E	0.890	1.00
206_H	219_T	0.889	1.00
41_I	157_A	0.885	1.00
266_A	320_V	0.884	1.00
112_L	404_T	0.882	1.00
230_D	346_T	0.881	1.00
29_E	84_C	0.879	1.00
32_A	81_R	0.878	1.00
323_V	328_D	0.878	1.00
229_V	269_F	0.874	1.00
157_A	160_Q	0.870	1.00
116_G	197_L	0.869	1.00
110_V	357_N	0.869	1.00
197_L	213_S	0.867	1.00
112_L	138_N	0.867	1.00
206_H	221_G	0.865	1.00
132_L	398_G	0.861	1.00
210_R	213_S	0.858	1.00
168_L	172_A	0.857	1.00
32_A	77_A	0.855	1.00
349_M	353_Q	0.850	1.00
197_L	209_C	0.838	1.00
297_G	313_F	0.838	1.00
353_Q	410_I	0.837	1.00
344_I	355_F	0.837	1.00
116_G	188_L	0.835	1.00
376_G	407_W	0.835	1.00
349_M	352_A	0.833	1.00
184_V	187_M	0.832	1.00
133_C	140_V	0.830	1.00
361_S	364_V	0.828	1.00
30_K	166_C	0.827	1.00
226_H	333_I	0.825	1.00
295_Q	298_P	0.821	1.00
9_A	139_A	0.817	1.00
52_D	72_R	0.817	1.00
199_P	205_L	0.816	1.00
239_L	273_L	0.814	1.00
127_V	130_A	0.813	1.00
235_I	265_I	0.813	1.00
104_R	353_Q	0.812	1.00
160_Q	171_G	0.802	1.00
142_L	152_N	0.801	1.00
300_K	311_D	0.800	1.00
4_Q	8_A	0.798	1.00
27_V	166_C	0.795	1.00
283_T	287_D	0.792	1.00
147_E	292_A	0.791	1.00
12_A	172_A	0.791	1.00
239_L	269_F	0.790	1.00
238_A	269_F	0.790	1.00
28_L	135_K	0.787	1.00
239_L	243_V	0.787	1.00
11_Q	14_Y	0.787	1.00
144_G	177_D	0.786	1.00
128_D	155_T	0.786	1.00
211_E	214_T	0.785	1.00
154_A	158_V	0.785	1.00
76_I	124_N	0.783	1.00
105_L	407_W	0.781	1.00
299_A	302_V	0.781	1.00
47_A	54_R	0.777	1.00
277_M	280_S	0.775	1.00
138_N	403_T	0.774	1.00
326_L	330_I	0.773	1.00
46_N	49_D	0.772	1.00
11_Q	15_K	0.771	1.00
261_V	265_I	0.769	1.00
35_L	76_I	0.768	1.00
356_V	366_V	0.766	1.00
43_L	47_A	0.762	1.00
182_A	186_E	0.761	1.00
14_Y	17_A	0.760	1.00
33_D	36_E	0.755	1.00
243_V	280_S	0.754	1.00
136_T	403_T	0.751	1.00
349_M	410_I	0.749	1.00
271_P	274_S	0.748	1.00
262_N	326_L	0.748	1.00
4_Q	7_I	0.746	1.00
74_K	77_A	0.743	1.00
298_P	305_K	0.743	1.00
45_A	150_R	0.741	1.00
127_V	155_T	0.738	1.00
332_H	335_E	0.736	1.00
146_K	181_R	0.734	1.00
330_I	354_R	0.730	1.00
54_R	286_A	0.728	1.00
293_Q	296_A	0.726	1.00
43_L	54_R	0.725	1.00
124_N	151_T	0.725	1.00
10_K	13_S	0.725	1.00
229_V	238_A	0.724	1.00
87_A	135_K	0.724	1.00
43_L	70_P	0.724	1.00
213_S	217_V	0.723	1.00
168_L	173_V	0.723	1.00
260_L	309_Y	0.723	1.00
178_N	184_V	0.719	1.00
203_A	383_E	0.718	1.00
274_S	277_M	0.717	1.00
243_V	273_L	0.717	1.00
142_L	173_V	0.715	1.00
237_E	240_K	0.715	1.00
15_K	19_L	0.712	1.00
15_K	18_Q	0.708	1.00
252_T	255_T	0.708	1.00
70_P	74_K	0.702	1.00
203_A	207_K	0.701	1.00
42_I	124_N	0.700	1.00
347_R	350_R	0.699	1.00
284_L	290_A	0.697	1.00
232_S	347_R	0.697	1.00
14_Y	358_E	0.692	1.00
74_K	78_D	0.692	1.00
301_V	317_D	0.691	1.00
189_R	212_Q	0.691	1.00
189_R	209_C	0.691	1.00
183_L	186_E	0.688	1.00
236_A	276_Q	0.688	1.00
127_V	152_N	0.688	1.00
39_S	43_L	0.688	1.00
160_Q	165_S	0.684	1.00
242_I	273_L	0.683	1.00
292_A	295_Q	0.683	1.00
300_K	304_V	0.683	1.00
218_I	401_A	0.683	1.00
185_S	189_R	0.682	1.00
292_A	296_A	0.681	1.00
346_T	351_N	0.681	1.00
216_P	401_A	0.678	1.00
227_I	343_A	0.677	1.00
188_L	197_L	0.677	1.00
352_A	356_V	0.676	1.00
325_D	331_A	0.674	1.00
16_L	27_V	0.673	1.00
29_E	88_D	0.673	1.00
210_R	219_T	0.671	1.00
41_I	45_A	0.669	1.00
141_I	174_Q	0.668	1.00
106_E	408_I	0.667	1.00
112_L	195_D	0.667	1.00
105_L	409_G	0.667	1.00
21_S	135_K	0.665	1.00
35_L	77_A	0.664	1.00
32_A	84_C	0.663	1.00
159_I	168_L	0.661	1.00
17_A	111_P	0.660	1.00
17_A	358_E	0.659	1.00
119_Y	127_V	0.658	1.00
146_K	296_A	0.656	1.00
52_D	122_R	0.654	1.00
5_M	176_I	0.651	1.00
341_S	365_Y	0.651	1.00
360_D	381_G	0.646	1.00
139_A	174_Q	0.642	1.00
44_N	47_A	0.641	1.00
285_H	317_D	0.641	1.00
296_A	299_A	0.641	1.00
304_V	313_F	0.640	1.00
350_R	353_Q	0.639	1.00
16_L	134_L	0.638	1.00
259_L	269_F	0.638	1.00
186_E	189_R	0.636	1.00
17_A	110_V	0.634	1.00
229_V	233_V	0.633	1.00
116_G	187_M	0.631	1.00
343_A	370_T	0.630	1.00
12_A	15_K	0.629	1.00
22_R	26_R	0.629	1.00
46_N	151_T	0.629	1.00
7_I	10_K	0.628	1.00
181_R	187_M	0.628	1.00
236_A	240_K	0.628	1.00
108_R	406_K	0.626	1.00
326_L	358_E	0.625	1.00
3_E	193_Y	0.625	1.00
235_I	268_S	0.624	1.00
330_I	359_V	0.624	1.00
344_I	352_A	0.620	1.00
130_A	142_L	0.620	1.00
23_E	27_V	0.619	1.00
115_I	138_N	0.616	1.00
301_V	305_K	0.614	1.00
273_L	277_M	0.613	1.00
350_R	354_R	0.610	1.00
235_I	269_F	0.610	1.00
304_V	307_E	0.609	1.00
309_Y	319_N	0.609	1.00
119_Y	126_T	0.609	1.00
293_Q	297_G	0.608	1.00
25_N	135_K	0.607	1.00
35_L	124_N	0.606	1.00
69_T	72_R	0.606	1.00
146_K	204_G	0.604	1.00
366_V	410_I	0.603	1.00
400_E	403_T	0.603	1.00
313_F	317_D	0.602	1.00
6_G	141_I	0.601	1.00
90_V	399_L	0.597	1.00
73_L	77_A	0.596	1.00
309_Y	332_H	0.595	1.00
107_R	405_Y	0.595	1.00
136_T	399_L	0.595	1.00
261_V	320_V	0.593	1.00
35_L	42_I	0.592	1.00
364_V	406_K	0.591	1.00
9_A	141_I	0.591	1.00
246_K	318_L	0.591	1.00
31_I	34_E	0.590	1.00
25_N	84_C	0.589	1.00
125_V	129_V	0.588	1.00
400_E	405_Y	0.587	1.00
75_G	79_D	0.586	1.00
8_A	170_A	0.584	1.00
220_G	340_H	0.582	1.00
30_K	165_S	0.581	1.00
124_N	155_T	0.579	1.00
245_A	369_S	0.578	1.00
263_K	266_A	0.577	1.00
47_A	286_A	0.577	1.00
146_K	208_L	0.575	1.00
365_Y	368_A	0.575	1.00
34_E	167_G	0.575	1.00
196_M	401_A	0.573	1.00
45_A	48_Q	0.572	1.00
227_I	259_L	0.572	1.00
8_A	11_Q	0.571	1.00
259_L	320_V	0.568	1.00
32_A	74_K	0.567	1.00
35_L	155_T	0.566	1.00
103_L	368_A	0.565	1.00
248_Q	252_T	0.565	1.00
247_T	280_S	0.564	1.00
46_N	72_R	0.563	1.00
198_I	402_L	0.562	1.00
5_M	174_Q	0.561	1.00
121_A	314_L	0.560	1.00
333_I	359_V	0.559	1.00
144_G	152_N	0.559	1.00
116_G	185_S	0.555	1.00
129_V	394_R	0.554	1.00
114_V	195_D	0.554	1.00
363_A	378_F	0.553	1.00
250_P	316_L	0.552	1.00
70_P	288_A	0.552	1.00
217_V	386_V	0.551	1.00
363_A	372_F	0.550	1.00
189_R	197_L	0.550	1.00
344_I	366_V	0.550	1.00
150_R	153_A	0.549	1.00
286_A	290_A	0.548	1.00
155_T	159_I	0.548	1.00
10_K	114_V	0.546	1.00
231_E	323_V	0.545	1.00
26_R	29_E	0.544	1.00
27_V	167_G	0.544	1.00
360_D	404_T	0.544	1.00
237_E	345_L	0.544	1.00
9_A	114_V	0.543	1.00
27_V	31_I	0.540	1.00
90_V	403_T	0.539	1.00
50_V	248_Q	0.537	1.00
273_L	320_V	0.537	1.00
233_V	238_A	0.534	1.00
94_I	107_R	0.534	1.00
3_E	6_G	0.534	1.00
182_A	208_L	0.534	1.00
178_N	185_S	0.534	1.00
329_A	333_I	0.532	1.00
225_C	341_S	0.532	1.00
46_N	50_V	0.531	1.00
30_K	167_G	0.530	1.00
204_G	292_A	0.527	1.00
256_V	343_A	0.527	1.00
253_C	312_E	0.526	1.00
236_A	275_K	0.526	1.00
117_V	130_A	0.526	1.00
355_F	359_V	0.524	1.00
183_L	187_M	0.522	1.00
14_Y	334_R	0.521	1.00
160_Q	167_G	0.521	1.00
386_V	404_T	0.519	1.00
53_A	67_A	0.519	1.00
54_R	67_A	0.519	1.00
265_I	269_F	0.518	1.00
73_L	76_I	0.517	1.00
43_L	73_L	0.517	1.00
313_F	319_N	0.515	1.00
294_L	301_V	0.515	1.00
116_G	141_I	0.515	1.00
271_P	278_A	0.514	1.00
118_I	209_C	0.514	1.00
110_V	360_D	0.513	1.00
83_V	132_L	0.513	1.00
85_N	88_D	0.513	1.00
203_A	222_I	0.513	1.00
235_I	238_A	0.512	1.00
148_T	152_N	0.511	1.00
26_R	81_R	0.511	1.00
35_L	80_V	0.511	1.00
39_S	77_A	0.510	1.00
245_A	255_T	0.510	1.00
115_I	140_V	0.509	1.00
257_E	319_N	0.505	1.00
261_V	266_A	0.505	1.00
115_I	198_I	0.505	1.00
83_V	131_S	0.502	1.00
296_A	300_K	0.502	1.00
134_L	173_V	0.502	1.00
246_K	259_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ek1A	5	0.94	100	0.095	Contact Map
1a4sA	4	0.9424	100	0.096	Contact Map
4pz2A	4	0.9448	100	0.099	Contact Map
4pxlA	4	0.9448	100	0.1	Contact Map
4qf6A	4	0.9353	100	0.101	Contact Map
4wj9A	4	0.9448	100	0.102	Contact Map
2d4eA	4	0.9448	100	0.102	Contact Map
4yweA	5	0.9329	100	0.103	Contact Map
4o5hA	4	0.94	100	0.103	Contact Map
3prlA	4	0.9472	100	0.104	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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