RECN - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

RECN - DNA repair protein RecN

UniProt:	P05824	Sequences: MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10831
Length:	553 (517)
Sequences:	5395 (4484)
Seq/√Len:	197.2

ECOLI - RECN SBCC
BACSU - RECN SMC YHAN SBCC YYDD
HALSA - Q9HS95 SPH1 RAD50 SPH2
SULSO - RAD50 Q97WH8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
213_E	297_R	5.596	1.00
522_N	525_A	3.617	1.00
186_R	332_E	3.396	1.00
177_Q	347_A	3.170	1.00
465_I	473_V	3.097	1.00
519_Q	525_A	3.068	1.00
64_L	68_F	3.059	1.00
318_S	321_A	3.019	1.00
8_S	15_E	3.006	1.00
365_H	369_Q	3.002	1.00
198_N	330_L	2.773	1.00
242_L	249_A	2.636	1.00
326_Y	330_L	2.621	1.00
354_H	358_L	2.584	1.00
297_R	300_E	2.580	1.00
198_N	326_Y	2.554	1.00
64_L	70_L	2.473	1.00
195_K	199_E	2.467	1.00
169_S	350_V	2.425	1.00
4_Q	17_E	2.412	1.00
242_L	246_L	2.393	1.00
194_L	326_Y	2.363	1.00
272_E	276_Q	2.348	1.00
345_T	349_A	2.323	1.00
466_S	533_L	2.307	1.00
165_L	349_A	2.212	1.00
249_A	253_V	2.183	1.00
365_H	409_A	2.174	1.00
4_Q	19_D	2.145	1.00
397_V	410_D	2.143	1.00
357_A	404_L	2.131	1.00
191_Q	195_K	2.128	1.00
191_Q	337_D	2.086	1.00
6_T	15_E	2.074	1.00
347_A	351_T	2.071	1.00
506_S	519_Q	2.061	1.00
45_C	78_R	2.039	1.00
393_F	414_F	2.037	1.00
210_I	301_L	2.020	1.00
64_L	67_R	2.015	1.00
187_A	191_Q	2.014	1.00
200_F	307_K	1.992	1.00
170_C	350_V	1.973	1.00
6_T	17_E	1.970	1.00
169_S	353_H	1.939	1.00
175_H	179_L	1.935	1.00
317_V	321_A	1.933	1.00
246_L	253_V	1.918	1.00
204_P	320_E	1.907	1.00
206_E	304_R	1.902	1.00
155_L	367_Q	1.901	1.00
324_Q	327_Q	1.898	1.00
26_V	499_G	1.881	1.00
170_C	174_A	1.870	1.00
246_L	249_A	1.853	1.00
328_S	332_E	1.845	1.00
64_L	80_L	1.843	1.00
327_Q	331_E	1.839	1.00
203_Q	209_Q	1.820	1.00
351_T	354_H	1.819	1.00
374_E	378_L	1.815	1.00
150_A	371_Y	1.807	1.00
187_A	333_Q	1.805	1.00
64_L	69_S	1.797	1.00
508_E	517_H	1.795	1.00
396_D	415_R	1.795	1.00
174_A	178_Q	1.793	1.00
162_R	353_H	1.792	1.00
166_W	350_V	1.778	1.00
324_Q	328_S	1.741	1.00
348_L	352_K	1.731	1.00
169_S	172_D	1.726	1.00
349_A	353_H	1.698	1.00
168_Q	172_D	1.695	1.00
331_E	335_Q	1.678	1.00
269_M	276_Q	1.670	1.00
65_C	68_F	1.669	1.00
152_E	367_Q	1.669	1.00
26_V	502_H	1.664	1.00
342_S	345_T	1.660	1.00
21_H	520_S	1.658	1.00
209_Q	213_E	1.657	1.00
273_A	280_A	1.651	1.00
173_L	350_V	1.646	1.00
246_L	252_L	1.640	1.00
80_L	85_L	1.635	1.00
162_R	360_I	1.622	1.00
470_A	492_L	1.600	1.00
243_Q	246_L	1.588	1.00
3_A	81_E	1.582	1.00
504_F	521_L	1.579	1.00
296_N	299_F	1.574	1.00
159_M	357_A	1.565	1.00
169_S	173_L	1.562	1.00
174_A	177_Q	1.556	1.00
398_K	411_R	1.553	1.00
529_E	532_R	1.548	1.00
63_D	70_L	1.537	1.00
376_A	395_I	1.531	1.00
207_F	312_A	1.526	1.00
63_D	66_A	1.522	1.00
317_V	322_L	1.521	1.00
327_Q	330_L	1.520	1.00
61_R	64_L	1.520	1.00
43_G	48_G	1.518	1.00
268_D	272_E	1.518	1.00
107_I	120_L	1.515	1.00
273_A	277_I	1.514	1.00
344_E	347_A	1.506	1.00
172_D	342_S	1.505	1.00
156_L	160_T	1.504	1.00
264_S	268_D	1.496	1.00
378_L	449_R	1.494	1.00
241_N	246_L	1.487	1.00
202_P	308_Q	1.482	1.00
422_Q	513_M	1.482	1.00
349_A	352_K	1.475	1.00
161_A	165_L	1.473	1.00
360_I	363_A	1.461	1.00
171_R	175_H	1.453	1.00
62_A	70_L	1.447	1.00
245_Q	249_A	1.442	1.00
3_A	90_E	1.430	1.00
338_D	341_D	1.421	1.00
167_H	170_C	1.420	1.00
165_L	168_Q	1.405	1.00
395_I	414_F	1.403	1.00
241_N	244_S	1.403	1.00
4_Q	79_W	1.397	1.00
66_A	70_L	1.392	1.00
269_M	279_E	1.384	1.00
418_T	430_V	1.381	1.00
78_R	82_E	1.377	1.00
62_A	68_F	1.377	1.00
182_E	186_R	1.375	1.00
524_K	528_Q	1.373	1.00
68_F	80_L	1.371	1.00
143_K	407_D	1.367	1.00
358_L	409_A	1.367	1.00
350_V	354_H	1.364	1.00
358_L	362_R	1.364	1.00
297_R	301_L	1.362	1.00
190_L	194_L	1.361	1.00
504_F	519_Q	1.356	1.00
214_Y	301_L	1.352	1.00
18_I	518_M	1.349	1.00
205_G	208_E	1.347	1.00
303_Q	307_K	1.347	1.00
376_A	394_T	1.344	1.00
248_T	253_V	1.338	1.00
433_G	460_E	1.334	1.00
173_L	347_A	1.332	1.00
378_L	381_D	1.315	1.00
178_Q	182_E	1.311	1.00
356_Q	360_I	1.311	1.00
66_A	69_S	1.306	1.00
260_D	287_Y	1.304	1.00
261_S	264_S	1.300	1.00
194_L	333_Q	1.299	1.00
165_L	353_H	1.299	1.00
116_Q	119_E	1.298	1.00
321_A	324_Q	1.297	1.00
169_S	349_A	1.291	1.00
356_Q	359_E	1.281	1.00
165_L	356_Q	1.277	1.00
355_Q	359_E	1.275	1.00
77_L	80_L	1.272	1.00
501_Q	520_S	1.270	1.00
107_I	112_V	1.265	1.00
359_E	363_A	1.261	1.00
373_E	376_A	1.256	1.00
139_P	413_E	1.255	1.00
270_L	280_A	1.253	1.00
330_L	334_Q	1.253	1.00
42_L	457_I	1.252	1.00
205_G	209_Q	1.250	1.00
207_F	211_D	1.250	1.00
362_R	366_Q	1.250	1.00
158_E	360_I	1.245	1.00
474_G	498_C	1.242	1.00
209_Q	212_E	1.239	1.00
158_E	363_A	1.237	1.00
158_E	162_R	1.234	1.00
155_L	158_E	1.233	1.00
188_E	192_Y	1.230	1.00
11_A	37_I	1.224	1.00
382_S	476_L	1.221	1.00
478_R	500_H	1.219	1.00
158_E	161_A	1.217	1.00
141_H	144_F	1.211	1.00
379_I	443_I	1.210	1.00
245_Q	253_V	1.210	1.00
65_C	70_L	1.209	1.00
471_A	475_K	1.208	1.00
210_I	214_Y	1.205	1.00
10_F	41_A	1.205	1.00
155_L	363_A	1.202	1.00
214_Y	218_A	1.194	1.00
433_G	464_G	1.192	1.00
70_L	76_A	1.191	1.00
420_P	509_T	1.191	1.00
299_F	303_Q	1.188	1.00
223_L	227_S	1.185	1.00
205_G	320_E	1.184	1.00
244_S	247_Y	1.179	1.00
61_R	65_C	1.178	1.00
214_Y	302_E	1.177	1.00
319_P	322_L	1.176	1.00
173_L	177_Q	1.175	1.00
105_G	112_V	1.173	1.00
376_A	380_T	1.171	1.00
61_R	68_F	1.170	1.00
64_L	82_E	1.165	1.00
173_L	343_Q	1.164	1.00
157_Q	161_A	1.162	1.00
325_Y	328_S	1.159	1.00
82_E	86_E	1.159	1.00
162_R	165_L	1.158	1.00
159_M	364_L	1.158	1.00
373_E	377_Q	1.154	1.00
245_Q	252_L	1.150	1.00
32_G	435_E	1.149	1.00
182_E	185_A	1.149	1.00
370_Q	374_E	1.148	1.00
14_R	515_E	1.147	1.00
213_E	216_R	1.140	1.00
189_L	193_Q	1.138	1.00
172_D	175_H	1.132	1.00
83_N	86_E	1.130	1.00
197_L	322_L	1.129	1.00
68_F	82_E	1.127	1.00
185_A	188_E	1.125	1.00
357_A	361_A	1.119	1.00
509_T	514_T	1.113	1.00
25_T	503_Y	1.111	1.00
482_E	500_H	1.105	1.00
351_T	355_Q	1.102	1.00
226_T	230_A	1.098	1.00
323_P	326_Y	1.095	1.00
352_K	356_Q	1.095	1.00
396_D	413_E	1.093	1.00
63_D	68_F	1.093	1.00
179_L	182_E	1.090	1.00
194_L	329_L	1.088	1.00
503_Y	518_M	1.087	1.00
509_T	512_A	1.086	1.00
225_T	229_N	1.085	1.00
200_F	311_L	1.084	1.00
130_Q	433_G	1.081	1.00
162_R	356_Q	1.079	1.00
143_K	412_I	1.079	1.00
344_E	348_L	1.076	1.00
347_A	350_V	1.075	1.00
24_M	488_C	1.070	1.00
222_Q	225_T	1.068	1.00
242_L	253_V	1.062	1.00
387_S	469_T	1.057	1.00
449_R	483_S	1.056	1.00
208_E	212_E	1.056	1.00
155_L	360_I	1.054	1.00
275_I	279_E	1.048	1.00
266_V	280_A	1.044	1.00
248_T	252_L	1.043	1.00
370_Q	377_Q	1.043	1.00
256_L	263_L	1.040	1.00
138_K	141_H	1.036	1.00
194_L	330_L	1.034	1.00
77_L	82_E	1.034	1.00
245_Q	248_T	1.032	1.00
334_Q	337_D	1.028	1.00
316_H	322_L	1.028	1.00
397_V	412_I	1.027	1.00
211_D	215_K	1.026	1.00
244_S	252_L	1.026	1.00
216_R	260_D	1.022	1.00
241_N	248_T	1.019	1.00
221_G	225_T	1.015	1.00
82_E	85_L	1.010	1.00
255_E	258_G	1.002	1.00
361_A	409_A	1.001	1.00
177_Q	343_Q	1.000	1.00
165_L	169_S	1.000	1.00
213_E	301_L	0.999	1.00
62_A	65_C	0.999	1.00
128_H	440_A	0.998	1.00
261_S	265_G	0.993	1.00
169_S	346_L	0.991	1.00
94_R	106_F	0.989	1.00
265_G	268_D	0.988	1.00
166_W	354_H	0.987	1.00
63_D	80_L	0.984	1.00
247_Y	250_K	0.982	1.00
251_Q	254_S	0.981	0.99
275_I	278_A	0.981	0.99
493_P	533_L	0.980	0.99
164_Q	168_Q	0.980	0.99
510_D	515_E	0.972	0.99
503_Y	520_S	0.971	0.99
139_P	411_R	0.970	0.99
438_R	465_I	0.969	0.99
479_Q	482_E	0.968	0.99
241_N	252_L	0.967	0.99
240_A	245_Q	0.966	0.99
93_L	121_G	0.963	0.99
325_Y	329_L	0.963	0.99
250_K	254_S	0.960	0.99
231_L	235_A	0.959	0.99
79_W	90_E	0.959	0.99
62_A	66_A	0.956	0.99
241_N	245_Q	0.954	0.99
170_C	354_H	0.954	0.99
279_E	283_E	0.952	0.99
394_T	424_M	0.951	0.99
276_Q	280_A	0.947	0.99
274_T	278_A	0.947	0.99
243_Q	253_V	0.944	0.99
181_Q	185_A	0.942	0.99
377_Q	381_D	0.942	0.99
159_M	361_A	0.941	0.99
383_M	391_G	0.939	0.99
460_E	489_V	0.938	0.99
195_K	198_N	0.937	0.99
366_Q	369_Q	0.936	0.99
151_N	154_S	0.936	0.99
340_A	344_E	0.932	0.99
283_E	286_H	0.923	0.99
480_L	486_V	0.922	0.99
224_L	228_Q	0.921	0.99
380_T	384_H	0.920	0.99
328_S	331_E	0.920	0.99
64_L	78_R	0.915	0.99
348_L	351_T	0.913	0.99
437_S	464_G	0.913	0.99
186_R	190_L	0.912	0.99
309_I	312_A	0.909	0.99
10_F	62_A	0.908	0.99
262_K	265_G	0.907	0.99
76_A	80_L	0.906	0.99
248_T	251_Q	0.905	0.99
193_Q	196_E	0.900	0.99
160_T	164_Q	0.899	0.99
215_K	218_A	0.898	0.99
220_S	291_L	0.898	0.99
435_E	460_E	0.897	0.99
226_T	256_L	0.895	0.99
508_E	515_E	0.892	0.99
68_F	77_L	0.891	0.99
194_L	198_N	0.891	0.99
243_Q	248_T	0.890	0.99
70_L	77_L	0.888	0.99
171_R	174_A	0.884	0.99
7_I	13_V	0.884	0.99
67_R	70_L	0.882	0.99
44_L	76_A	0.882	0.99
334_Q	338_D	0.879	0.99
365_H	410_D	0.879	0.99
471_A	498_C	0.875	0.99
361_A	404_L	0.875	0.99
202_P	319_P	0.874	0.99
6_T	77_L	0.874	0.99
167_H	171_R	0.873	0.99
113_P	116_Q	0.872	0.99
385_A	476_L	0.870	0.99
468_P	471_A	0.868	0.99
362_R	409_A	0.867	0.99
128_H	131_H	0.866	0.99
240_A	246_L	0.864	0.99
285_R	289_D	0.862	0.99
321_A	325_Y	0.862	0.99
332_E	335_Q	0.862	0.99
80_L	84_Q	0.861	0.99
64_L	76_A	0.861	0.99
460_E	463_V	0.861	0.99
180_S	184_A	0.860	0.99
465_I	469_T	0.856	0.99
438_R	469_T	0.854	0.99
230_A	284_L	0.853	0.99
31_T	469_T	0.852	0.99
12_I	39_I	0.851	0.99
186_R	189_L	0.850	0.99
172_D	176_H	0.847	0.99
196_E	314_K	0.846	0.99
312_A	319_P	0.843	0.98
269_M	273_A	0.843	0.98
66_A	80_L	0.842	0.98
435_E	438_R	0.841	0.98
7_I	38_A	0.839	0.98
44_L	50_A	0.838	0.98
166_W	170_C	0.833	0.98
399_F	409_A	0.827	0.98
472_V	475_K	0.827	0.98
183_R	187_A	0.826	0.98
295_P	298_L	0.825	0.98
359_E	362_R	0.824	0.98
360_I	364_L	0.817	0.98
524_K	527_L	0.817	0.98
308_Q	323_P	0.817	0.98
63_D	67_R	0.815	0.98
10_F	44_L	0.813	0.98
172_D	335_Q	0.811	0.98
65_C	69_S	0.811	0.98
168_Q	175_H	0.808	0.98
272_E	275_I	0.804	0.98
106_F	111_A	0.803	0.98
69_S	75_A	0.803	0.98
311_L	314_K	0.803	0.98
192_Y	196_E	0.801	0.98
384_H	389_P	0.798	0.98
420_P	423_P	0.798	0.98
243_Q	252_L	0.794	0.98
241_N	253_V	0.792	0.98
249_A	252_L	0.791	0.98
162_R	169_S	0.791	0.98
64_L	77_L	0.789	0.98
390_H	420_P	0.786	0.98
131_H	134_Q	0.786	0.98
438_R	460_E	0.785	0.98
77_L	94_R	0.780	0.97
461_V	492_L	0.780	0.97
188_E	191_Q	0.777	0.97
32_G	469_T	0.777	0.97
509_T	513_M	0.775	0.97
350_V	353_H	0.773	0.97
152_E	156_L	0.772	0.97
506_S	517_H	0.771	0.97
215_K	219_N	0.769	0.97
189_L	192_Y	0.768	0.97
246_L	277_I	0.768	0.97
257_I	260_D	0.767	0.97
47_G	462_D	0.765	0.97
184_A	187_A	0.764	0.97
229_N	233_L	0.763	0.97
525_A	528_Q	0.760	0.97
331_E	334_Q	0.759	0.97
413_E	428_A	0.759	0.97
269_M	272_E	0.758	0.97
46_L	125_I	0.758	0.97
75_A	94_R	0.757	0.97
353_H	356_Q	0.757	0.97
478_R	498_C	0.754	0.97
5_L	20_F	0.753	0.97
278_A	281_S	0.752	0.97
252_L	256_L	0.748	0.97
369_Q	373_E	0.746	0.97
81_E	85_L	0.746	0.97
76_A	86_E	0.745	0.97
212_E	261_S	0.744	0.97
5_L	78_R	0.744	0.97
250_K	253_V	0.741	0.97
183_R	336_L	0.741	0.97
422_Q	425_Q	0.741	0.97
2_L	78_R	0.740	0.97
190_L	332_E	0.738	0.96
80_L	83_N	0.737	0.96
476_L	480_L	0.737	0.96
76_A	79_W	0.734	0.96
526_R	531_A	0.734	0.96
68_F	85_L	0.733	0.96
421_G	514_T	0.731	0.96
369_Q	397_V	0.731	0.96
68_F	78_R	0.731	0.96
5_L	18_I	0.730	0.96
227_S	230_A	0.729	0.96
134_Q	142_Q	0.728	0.96
243_Q	249_A	0.728	0.96
435_E	469_T	0.725	0.96
464_G	491_H	0.725	0.96
306_S	310_S	0.724	0.96
208_E	211_D	0.721	0.96
240_A	248_T	0.721	0.96
70_L	78_R	0.721	0.96
172_D	349_A	0.721	0.96
299_F	302_E	0.720	0.96
13_V	16_L	0.719	0.96
433_G	437_S	0.719	0.96
265_G	283_E	0.719	0.96
502_H	526_R	0.718	0.96
62_A	69_S	0.718	0.96
70_L	82_E	0.718	0.96
271_E	274_T	0.718	0.96
380_T	392_Q	0.718	0.96
32_G	438_R	0.717	0.96
177_Q	181_Q	0.716	0.96
460_E	464_G	0.716	0.96
130_Q	464_G	0.714	0.96
143_K	397_V	0.714	0.96
65_C	423_P	0.712	0.96
244_S	248_T	0.712	0.96
437_S	460_E	0.711	0.96
126_Q	444_Q	0.711	0.96
384_H	390_H	0.711	0.96
364_L	368_R	0.710	0.96
213_E	217_L	0.709	0.96
9_N	14_R	0.709	0.96
8_S	75_A	0.707	0.96
45_C	76_A	0.706	0.95
157_Q	160_T	0.706	0.95
279_E	282_D	0.705	0.95
329_L	332_E	0.702	0.95
249_A	256_L	0.701	0.95
375_L	379_I	0.700	0.95
231_L	281_S	0.699	0.95
163_Y	167_H	0.697	0.95
311_L	315_H	0.697	0.95
358_L	404_L	0.697	0.95
523_K	527_L	0.697	0.95
263_L	287_Y	0.694	0.95
63_D	69_S	0.693	0.95
150_A	367_Q	0.690	0.95
365_H	399_F	0.688	0.95
362_R	399_F	0.687	0.95
144_F	148_G	0.686	0.95
367_Q	370_Q	0.686	0.95
20_F	503_Y	0.684	0.95
216_R	220_S	0.684	0.95
469_T	473_V	0.684	0.95
161_A	164_Q	0.683	0.95
319_P	323_P	0.682	0.95
392_Q	417_T	0.681	0.95
229_N	252_L	0.681	0.95
345_T	348_L	0.681	0.95
207_F	319_P	0.680	0.94
308_Q	322_L	0.679	0.94
170_C	173_L	0.678	0.94
390_H	393_F	0.677	0.94
21_H	501_Q	0.677	0.94
190_L	329_L	0.677	0.94
126_Q	135_L	0.676	0.94
228_Q	232_A	0.675	0.94
142_Q	395_I	0.673	0.94
385_A	479_Q	0.673	0.94
390_H	509_T	0.671	0.94
381_D	385_A	0.671	0.94
510_D	517_H	0.670	0.94
363_A	366_Q	0.667	0.94
468_P	472_V	0.666	0.94
164_Q	406_A	0.666	0.94
79_W	92_L	0.666	0.94
68_F	83_N	0.665	0.94
79_W	82_E	0.662	0.94
260_D	263_L	0.662	0.94
251_Q	255_E	0.660	0.94
445_V	480_L	0.660	0.94
295_P	299_F	0.660	0.94
7_I	37_I	0.660	0.94
296_N	300_E	0.659	0.93
437_S	461_V	0.658	0.93
294_D	297_R	0.658	0.93
246_L	250_K	0.654	0.93
95_R	103_S	0.653	0.93
269_M	280_A	0.653	0.93
160_T	407_D	0.652	0.93
343_Q	347_A	0.652	0.93
11_A	36_S	0.651	0.93
278_A	282_D	0.649	0.93
132_A	135_L	0.648	0.93
79_W	83_N	0.647	0.93
322_L	325_Y	0.647	0.93
223_L	260_D	0.646	0.93
121_G	125_I	0.645	0.93
380_T	383_M	0.644	0.93
217_L	293_L	0.643	0.93
230_A	233_L	0.643	0.93
437_S	491_H	0.643	0.93
462_D	492_L	0.643	0.93
47_G	435_E	0.643	0.93
306_S	309_I	0.642	0.93
259_M	263_L	0.642	0.93
52_A	63_D	0.642	0.93
440_A	463_V	0.642	0.93
61_R	67_R	0.640	0.92
264_S	267_L	0.640	0.92
435_E	465_I	0.640	0.92
335_Q	342_S	0.638	0.92
415_R	424_M	0.638	0.92
18_I	38_A	0.637	0.92
146_L	412_I	0.636	0.92
207_F	309_I	0.636	0.92
363_A	370_Q	0.636	0.92
245_Q	250_K	0.635	0.92
346_L	349_A	0.635	0.92
385_A	475_K	0.635	0.92
238_E	241_N	0.633	0.92
184_A	188_E	0.632	0.92
227_S	231_L	0.631	0.92
461_V	495_V	0.630	0.92
398_K	413_E	0.629	0.92
27_I	499_G	0.629	0.92
292_D	295_P	0.627	0.92
134_Q	137_T	0.625	0.92
346_L	350_V	0.624	0.92
181_Q	184_A	0.623	0.91
417_T	424_M	0.623	0.91
435_E	489_V	0.623	0.91
33_A	36_S	0.622	0.91
146_L	149_Y	0.620	0.91
341_D	344_E	0.619	0.91
303_Q	306_S	0.616	0.91
371_Y	374_E	0.616	0.91
485_Q	489_V	0.614	0.91
227_S	287_Y	0.613	0.91
142_Q	145_L	0.611	0.91
143_K	147_D	0.610	0.91
42_L	78_R	0.610	0.91
235_A	281_S	0.610	0.91
93_L	105_G	0.609	0.91
76_A	82_E	0.607	0.90
176_H	180_S	0.606	0.90
355_Q	358_L	0.606	0.90
490_T	496_A	0.605	0.90
466_S	529_E	0.605	0.90
216_R	223_L	0.605	0.90
149_Y	378_L	0.605	0.90
372_A	376_A	0.604	0.90
242_L	245_Q	0.604	0.90
96_V	106_F	0.601	0.90
382_S	445_V	0.599	0.90
416_V	439_I	0.599	0.90
29_G	33_A	0.598	0.90
499_G	502_H	0.598	0.90
75_A	80_L	0.597	0.90
267_L	271_E	0.596	0.90
437_S	444_Q	0.596	0.90
338_D	342_S	0.596	0.90
437_S	462_D	0.596	0.90
51_E	61_R	0.595	0.90
154_S	158_E	0.595	0.90
32_G	465_I	0.594	0.89
12_I	37_I	0.594	0.89
80_L	86_E	0.594	0.89
216_R	262_K	0.591	0.89
159_M	163_Y	0.591	0.89
61_R	66_A	0.590	0.89
438_R	464_G	0.589	0.89
313_R	316_H	0.589	0.89
122_Q	126_Q	0.588	0.89
179_L	183_R	0.587	0.89
166_W	169_S	0.587	0.89
286_H	289_D	0.587	0.89
273_A	276_Q	0.586	0.89
69_S	82_E	0.586	0.89
64_L	83_N	0.582	0.88
244_S	250_K	0.581	0.88
501_Q	523_K	0.581	0.88
438_R	491_H	0.580	0.88
241_N	249_A	0.580	0.88
240_A	244_S	0.580	0.88
152_E	155_L	0.578	0.88
69_S	96_V	0.578	0.88
64_L	75_A	0.577	0.88
437_S	440_A	0.577	0.88
470_A	494_Q	0.576	0.88
519_Q	528_Q	0.576	0.88
200_F	322_L	0.576	0.88
281_S	285_R	0.575	0.88
378_L	382_S	0.574	0.88
162_R	357_A	0.573	0.88
382_S	385_A	0.573	0.88
253_V	270_L	0.570	0.87
302_E	306_S	0.570	0.87
352_K	355_Q	0.569	0.87
65_C	85_L	0.567	0.87
258_G	261_S	0.567	0.87
475_K	498_C	0.565	0.87
305_I	309_I	0.565	0.87
131_H	436_L	0.565	0.87
208_E	320_E	0.565	0.87
115_S	118_R	0.564	0.87
262_K	290_R	0.563	0.87
362_R	365_H	0.563	0.87
224_L	227_S	0.562	0.87
122_Q	138_K	0.561	0.87
80_L	91_C	0.561	0.87
519_Q	523_K	0.561	0.87
366_Q	373_E	0.559	0.86
463_V	492_L	0.557	0.86
287_Y	291_L	0.557	0.86
438_R	467_G	0.556	0.86
33_A	460_E	0.555	0.86
91_C	120_L	0.554	0.86
38_A	487_M	0.554	0.86
93_L	117_L	0.553	0.86
240_A	252_L	0.553	0.86
502_H	507_K	0.553	0.86
271_E	275_I	0.552	0.86
309_I	313_R	0.551	0.86
257_I	264_S	0.551	0.86
460_E	491_H	0.550	0.86
197_L	323_P	0.550	0.86
239_D	246_L	0.550	0.86
462_D	470_A	0.550	0.86
68_F	75_A	0.549	0.85
403_H	407_D	0.549	0.85
433_G	489_V	0.548	0.85
282_D	285_R	0.548	0.85
455_A	460_E	0.548	0.85
294_D	300_E	0.547	0.85
64_L	79_W	0.547	0.85
513_M	517_H	0.547	0.85
308_Q	319_P	0.547	0.85
70_L	85_L	0.546	0.85
276_Q	279_E	0.544	0.85
444_Q	463_V	0.544	0.85
133_H	137_T	0.544	0.85
270_L	273_A	0.543	0.85
345_T	352_K	0.543	0.85
254_S	271_E	0.543	0.85
121_G	124_L	0.543	0.85
451_M	484_T	0.542	0.85
22_S	25_T	0.541	0.85
376_A	397_V	0.540	0.84
421_G	427_I	0.539	0.84
69_S	80_L	0.538	0.84
44_L	97_I	0.538	0.84
440_A	444_Q	0.537	0.84
438_R	489_V	0.536	0.84
266_V	283_E	0.536	0.84
175_H	178_Q	0.536	0.84
462_D	474_G	0.535	0.84
225_T	228_Q	0.535	0.84
438_R	470_A	0.535	0.84
263_L	266_V	0.534	0.84
173_L	346_L	0.533	0.84
392_Q	424_M	0.532	0.84
457_I	487_M	0.532	0.84
28_T	460_E	0.531	0.84
77_L	85_L	0.529	0.83
92_L	113_P	0.528	0.83
218_A	302_E	0.528	0.83
513_M	516_T	0.528	0.83
433_G	461_V	0.526	0.83
301_L	305_I	0.526	0.83
67_R	80_L	0.525	0.83
105_G	117_L	0.525	0.83
440_A	492_L	0.525	0.83
31_T	460_E	0.525	0.83
372_A	397_V	0.524	0.83
376_A	383_M	0.523	0.83
375_L	395_I	0.523	0.83
32_G	444_Q	0.523	0.83
9_N	67_R	0.523	0.83
437_S	463_V	0.522	0.82
36_S	40_D	0.522	0.82
435_E	462_D	0.521	0.82
39_I	127_I	0.521	0.82
508_E	525_A	0.519	0.82
246_L	255_E	0.518	0.82
64_L	85_L	0.518	0.82
214_Y	217_L	0.515	0.82
235_A	285_R	0.515	0.82
419_N	422_Q	0.515	0.82
437_S	474_G	0.515	0.82
469_T	472_V	0.514	0.82
65_C	76_A	0.513	0.81
239_D	243_Q	0.513	0.81
260_D	264_S	0.513	0.81
70_L	75_A	0.513	0.81
269_M	283_E	0.512	0.81
47_G	433_G	0.511	0.81
361_A	365_H	0.510	0.81
187_A	194_L	0.510	0.81
106_F	109_G	0.510	0.81
242_L	248_T	0.510	0.81
76_A	85_L	0.508	0.81
105_G	114_L	0.507	0.81
64_L	86_E	0.507	0.81
137_T	436_L	0.506	0.81
125_I	129_G	0.506	0.81
304_R	307_K	0.504	0.80
260_D	291_L	0.504	0.80
27_I	38_A	0.504	0.80
160_T	406_A	0.503	0.80
69_S	76_A	0.502	0.80
40_D	487_M	0.502	0.80
441_L	444_Q	0.501	0.80
319_P	326_Y	0.500	0.80

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ad8A	1	0.8156	100	0.302	Contact Map
4abyA	1	0.6637	100	0.443	Contact Map
4ux3A	1	0.7631	100	0.444	Contact Map
3zgxA	2	0.6148	100	0.474	Contact Map
1w1wA	2	0.566	100	0.529	Contact Map
3auyA	2	0.6275	100	0.532	Contact Map
4i99A	2	0.5606	100	0.589	Contact Map
3qf7A	2	0.6004	100	0.624	Contact Map
3qktA	2	0.5696	100	0.635	Contact Map
2o5vA	1	0.6203	100	0.676	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0144 seconds.