T1SK - ECOLI - GREMLIN Contacts

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T1SK - Type-1 restriction enzyme EcoKI specificity protein

UniProt:	P05719	Sequences: MSAGKLPEGWVIAPVSTVTTLIRGVTYKKEQAINYLKDDYLPLIRANNIQNGKFDTTDLVFVPKNLVKESQKISPEDIVIAMSSGSKSVVGKSAHQHLPFECSFGAFCGVLRPEKLIFSGFIAHFTKSSLYRNKISSLSAGANINNIKPASFDLINIPIPPLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVNGKLTEKWRNFEPQHSVFKKLNFESILTELRNGLSSKPNESGVGHPILRISSVRAGHVDQNDIRFLECSESELNRHKLQDGDLLFTRYNGSLEFVGVCGLLKKLQHQNLLYPDKLIRARLTKDALPEYIEIFFSSPSARNAMMNCVKTTSGQKGISGKDIKSQVVLLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRGELTAQWRAENPDLISGENSAAALLEKIKAERAASGGKKASRKKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10460
Length:	464 (385)
Sequences:	2063 (2052)
Seq/√Len:	104.6

ECOLI - T1SK
HALSA - Q9HSR8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
293_Y	359_G	4.367	1.00
319_K	359_G	4.119	1.00
77_D	112_R	4.021	1.00
293_Y	319_K	4.001	1.00
107_F	146_N	3.476	1.00
83_S	107_F	3.435	1.00
83_S	146_N	3.240	1.00
292_R	318_D	3.154	1.00
84_S	145_N	2.969	1.00
118_F	166_K	2.884	1.00
287_D	324_R	2.868	1.00
416_K	421_E	2.809	1.00
107_F	144_I	2.681	1.00
294_N	358_K	2.680	1.00
82_M	107_F	2.673	1.00
293_Y	357_Q	2.648	1.00
332_E	386_E	2.637	1.00
74_S	101_E	2.634	1.00
292_R	319_K	2.537	1.00
82_M	146_N	2.485	1.00
237_N	240_S	2.423	1.00
292_R	321_I	2.326	1.00
284_Q	324_R	2.232	1.00
104_F	110_V	2.231	1.00
319_K	357_Q	2.230	1.00
325_L	334_I	2.182	1.00
75_P	101_E	2.180	1.00
149_P	153_D	2.150	1.00
84_S	89_V	2.096	1.00
232_L	323_A	2.095	1.00
88_S	144_I	2.088	1.00
292_R	317_P	2.069	1.00
316_Y	322_R	2.060	1.00
330_L	379_A	2.056	1.00
240_S	318_D	2.010	1.00
83_S	106_A	1.994	1.00
82_M	109_G	1.993	1.00
292_R	359_G	1.938	1.00
255_I	293_Y	1.931	1.00
294_N	356_G	1.861	1.00
293_Y	318_D	1.815	1.00
46_A	81_A	1.796	1.00
83_S	144_I	1.786	1.00
321_I	362_G	1.785	1.00
226_L	372_L	1.763	1.00
108_C	146_N	1.707	1.00
14_P	154_L	1.679	1.00
353_T	358_K	1.674	1.00
82_M	106_A	1.653	1.00
293_Y	317_P	1.586	1.00
254_R	317_P	1.584	1.00
296_S	300_V	1.573	1.00
82_M	108_C	1.569	1.00
237_N	319_K	1.542	1.00
240_S	319_K	1.541	1.00
95_H	120_G	1.538	1.00
316_Y	319_K	1.515	1.00
14_P	156_N	1.501	1.00
229_E	366_K	1.493	1.00
83_S	109_G	1.492	1.00
84_S	144_I	1.483	1.00
254_R	318_D	1.474	1.00
294_N	357_Q	1.474	1.00
255_I	319_K	1.467	1.00
186_F	395_I	1.462	1.00
237_N	317_P	1.458	1.00
84_S	88_S	1.455	1.00
74_S	77_D	1.451	1.00
83_S	89_V	1.434	1.00
46_A	83_S	1.432	1.00
255_I	294_N	1.432	1.00
184_A	187_E	1.429	1.00
237_N	293_Y	1.424	1.00
255_I	291_T	1.421	1.00
254_R	319_K	1.416	1.00
13_A	159_I	1.409	1.00
375_V	378_Q	1.400	1.00
84_S	107_F	1.398	1.00
240_S	317_P	1.397	1.00
23_R	83_S	1.386	1.00
212_K	215_N	1.378	1.00
285_D	307_K	1.373	1.00
105_G	108_C	1.367	1.00
46_A	82_M	1.365	1.00
294_N	319_K	1.361	1.00
294_N	317_P	1.355	0.99
89_V	107_F	1.347	0.99
104_F	108_C	1.345	0.99
188_Q	192_I	1.339	0.99
417_A	422_L	1.337	0.99
362_G	366_K	1.336	0.99
81_A	89_V	1.335	0.99
89_V	144_I	1.334	0.99
329_A	334_I	1.330	0.99
81_A	144_I	1.330	0.99
281_H	315_L	1.324	0.99
182_T	185_R	1.321	0.99
117_I	122_I	1.320	0.99
45_R	146_N	1.312	0.99
296_S	319_K	1.308	0.99
79_V	108_C	1.297	0.99
294_N	301_G	1.295	0.99
226_L	230_S	1.292	0.99
289_L	320_L	1.291	0.99
29_K	60_V	1.283	0.99
108_C	144_I	1.279	0.99
220_H	223_F	1.272	0.99
104_F	107_F	1.269	0.99
96_Q	102_C	1.265	0.99
105_G	144_I	1.263	0.99
82_M	105_G	1.262	0.99
23_R	106_A	1.262	0.99
291_T	296_S	1.260	0.99
109_G	152_F	1.251	0.99
318_D	359_G	1.247	0.99
252_I	317_P	1.246	0.99
296_S	356_G	1.243	0.99
71_Q	107_F	1.237	0.99
409_L	412_S	1.237	0.99
281_H	322_R	1.234	0.99
237_N	292_R	1.227	0.99
118_F	169_A	1.227	0.99
237_N	322_R	1.219	0.99
291_T	302_V	1.215	0.99
239_L	319_K	1.214	0.99
321_I	365_I	1.210	0.99
90_V	144_I	1.209	0.99
45_R	107_F	1.208	0.99
193_L	197_R	1.204	0.99
292_R	316_Y	1.202	0.99
120_G	173_D	1.198	0.99
82_M	144_I	1.198	0.99
317_P	359_G	1.195	0.99
255_I	317_P	1.194	0.99
317_P	320_L	1.193	0.99
305_L	335_E	1.192	0.99
254_R	296_S	1.190	0.99
318_D	321_I	1.189	0.99
293_Y	316_Y	1.174	0.99
210_T	213_W	1.170	0.99
193_L	196_F	1.169	0.98
81_A	92_K	1.169	0.98
46_A	107_F	1.169	0.98
26_T	105_G	1.168	0.98
169_A	173_D	1.163	0.98
346_A	369_V	1.163	0.98
19_T	122_I	1.159	0.98
239_L	318_D	1.157	0.98
188_Q	405_R	1.155	0.98
73_I	104_F	1.152	0.98
213_W	216_F	1.149	0.98
26_T	106_A	1.145	0.98
281_H	319_K	1.144	0.98
241_S	318_D	1.144	0.98
252_I	319_K	1.143	0.98
377_E	381_I	1.136	0.98
83_S	143_N	1.132	0.98
381_I	385_V	1.130	0.98
182_T	189_I	1.129	0.98
294_N	300_V	1.126	0.98
175_L	178_Q	1.123	0.98
83_S	105_G	1.120	0.98
241_S	319_K	1.116	0.98
255_I	359_G	1.110	0.98
207_G	210_T	1.108	0.98
77_D	110_V	1.105	0.98
45_R	83_S	1.101	0.98
45_R	105_G	1.099	0.98
74_S	112_R	1.094	0.98
187_E	191_Q	1.089	0.98
178_Q	182_T	1.087	0.98
89_V	92_K	1.086	0.98
45_R	106_A	1.085	0.98
291_T	356_G	1.082	0.97
46_A	146_N	1.080	0.97
45_R	48_N	1.075	0.97
23_R	105_G	1.072	0.97
206_N	209_L	1.071	0.97
292_R	362_G	1.066	0.97
46_A	105_G	1.059	0.97
161_P	164_E	1.058	0.97
283_L	314_L	1.055	0.97
223_F	373_P	1.053	0.97
27_Y	107_F	1.053	0.97
246_S	249_G	1.046	0.97
109_G	146_N	1.046	0.97
340_S	343_A	1.045	0.97
293_Y	321_I	1.045	0.97
89_V	148_K	1.037	0.97
14_P	17_T	1.035	0.97
255_I	357_Q	1.035	0.97
84_S	146_N	1.028	0.97
240_S	293_Y	1.027	0.97
289_L	306_L	1.027	0.97
236_R	281_H	1.027	0.97
83_S	104_F	1.025	0.97
291_T	357_Q	1.025	0.97
169_A	172_L	1.023	0.96
316_Y	320_L	1.022	0.96
240_S	359_G	1.021	0.96
84_S	143_N	1.018	0.96
109_G	149_P	1.017	0.96
356_G	359_G	1.015	0.96
12_I	156_N	1.015	0.96
45_R	82_M	1.014	0.96
229_E	367_S	1.013	0.96
254_R	359_G	1.003	0.96
89_V	105_G	1.003	0.96
106_A	146_N	1.001	0.96
185_R	189_I	1.001	0.96
182_T	197_R	0.998	0.96
186_F	196_F	0.998	0.96
143_N	146_N	0.997	0.96
80_I	135_I	0.993	0.96
263_V	304_G	0.993	0.96
203_G	219_Q	0.992	0.96
375_V	379_A	0.986	0.96
412_S	416_K	0.985	0.96
16_S	153_D	0.983	0.96
25_V	71_Q	0.982	0.96
107_F	143_N	0.982	0.96
82_M	143_N	0.981	0.96
178_Q	186_F	0.975	0.95
343_A	347_M	0.975	0.95
79_V	96_Q	0.974	0.95
105_G	109_G	0.969	0.95
81_A	107_F	0.960	0.95
240_S	252_I	0.957	0.95
89_V	145_N	0.955	0.95
106_A	109_G	0.953	0.95
82_M	90_V	0.946	0.95
82_M	103_S	0.939	0.94
294_N	318_D	0.938	0.94
123_A	127_K	0.936	0.94
185_R	188_Q	0.935	0.94
292_R	320_L	0.933	0.94
84_S	105_G	0.931	0.94
188_Q	191_Q	0.929	0.94
81_A	84_S	0.928	0.94
338_F	343_A	0.927	0.94
166_K	170_E	0.926	0.94
84_S	90_V	0.922	0.94
83_S	90_V	0.920	0.94
292_R	357_Q	0.918	0.94
293_Y	296_S	0.918	0.94
239_L	293_Y	0.914	0.94
292_R	361_S	0.913	0.93
47_N	83_S	0.912	0.93
164_E	167_I	0.912	0.93
414_L	418_F	0.911	0.93
227_N	367_S	0.909	0.93
237_N	318_D	0.907	0.93
23_R	82_M	0.902	0.93
46_A	108_C	0.899	0.93
241_S	317_P	0.899	0.93
107_F	148_K	0.898	0.93
240_S	292_R	0.896	0.93
291_T	358_K	0.895	0.93
197_R	202_G	0.895	0.93
197_R	200_V	0.895	0.93
43_L	83_S	0.893	0.93
105_G	110_V	0.890	0.93
237_N	362_G	0.889	0.93
238_G	293_Y	0.886	0.92
19_T	111_L	0.884	0.92
26_T	43_L	0.884	0.92
186_F	192_I	0.880	0.92
88_S	91_G	0.878	0.92
73_I	146_N	0.873	0.92
418_F	422_L	0.871	0.92
380_E	383_R	0.867	0.92
291_T	318_D	0.866	0.92
83_S	92_K	0.865	0.91
227_N	230_S	0.864	0.91
46_A	50_Q	0.862	0.91
254_R	357_Q	0.862	0.91
179_V	410_T	0.858	0.91
320_L	359_G	0.858	0.91
104_F	146_N	0.855	0.91
252_I	318_D	0.853	0.91
25_V	107_F	0.853	0.91
241_S	292_R	0.852	0.91
330_L	382_V	0.852	0.91
21_L	24_G	0.851	0.91
109_G	144_I	0.847	0.91
255_I	281_H	0.847	0.91
212_K	216_F	0.841	0.90
27_Y	43_L	0.841	0.90
46_A	106_A	0.839	0.90
416_K	422_L	0.839	0.90
255_I	358_K	0.839	0.90
43_L	106_A	0.838	0.90
12_I	158_P	0.838	0.90
359_G	362_G	0.837	0.90
317_P	357_Q	0.835	0.90
316_Y	321_I	0.834	0.90
252_I	315_L	0.830	0.90
294_N	344_R	0.830	0.90
84_S	108_C	0.828	0.90
82_M	104_F	0.828	0.90
23_R	107_F	0.827	0.90
162_L	166_K	0.827	0.90
83_S	96_Q	0.821	0.89
258_V	304_G	0.821	0.89
319_K	356_G	0.818	0.89
90_V	132_R	0.818	0.89
293_Y	356_G	0.816	0.89
77_D	102_C	0.815	0.89
240_S	357_Q	0.813	0.89
90_V	107_F	0.810	0.89
252_I	292_R	0.810	0.89
45_R	60_V	0.808	0.88
303_C	335_E	0.808	0.88
237_N	359_G	0.807	0.88
240_S	255_I	0.805	0.88
186_F	189_I	0.804	0.88
197_R	203_G	0.799	0.88
24_G	106_A	0.798	0.88
291_T	294_N	0.796	0.88
281_H	292_R	0.796	0.88
173_D	176_L	0.794	0.88
106_A	144_I	0.786	0.87
25_V	106_A	0.784	0.87
287_D	322_R	0.784	0.87
90_V	139_S	0.783	0.87
46_A	109_G	0.780	0.87
20_T	112_R	0.780	0.87
240_S	316_Y	0.777	0.86
83_S	147_I	0.773	0.86
83_S	108_C	0.769	0.86
28_K	106_A	0.766	0.86
83_S	141_G	0.766	0.86
275_E	315_L	0.766	0.86
254_R	292_R	0.765	0.86
317_P	321_I	0.765	0.86
124_H	172_L	0.761	0.85
240_S	243_P	0.758	0.85
146_N	149_P	0.757	0.85
83_S	149_P	0.756	0.85
22_I	112_R	0.755	0.85
240_S	281_H	0.755	0.85
207_G	215_N	0.755	0.85
237_N	243_P	0.753	0.85
291_T	319_K	0.750	0.84
243_P	293_Y	0.749	0.84
139_S	146_N	0.748	0.84
88_S	143_N	0.748	0.84
194_K	203_G	0.747	0.84
196_F	202_G	0.745	0.84
90_V	143_N	0.745	0.84
320_L	357_Q	0.743	0.84
92_K	146_N	0.743	0.84
255_I	296_S	0.739	0.84
236_R	318_D	0.736	0.83
21_L	149_P	0.734	0.83
49_I	81_A	0.730	0.83
13_A	17_T	0.728	0.83
240_S	315_L	0.726	0.83
26_T	82_M	0.726	0.83
64_K	68_K	0.726	0.83
193_L	200_V	0.724	0.82
256_S	294_N	0.724	0.82
253_L	320_L	0.723	0.82
290_F	357_Q	0.718	0.82
257_S	267_D	0.718	0.82
211_E	215_N	0.718	0.82
239_L	317_P	0.717	0.82
103_S	106_A	0.717	0.82
254_R	269_R	0.717	0.82
259_R	302_V	0.716	0.82
103_S	107_F	0.715	0.82
24_G	27_Y	0.714	0.81
321_I	357_Q	0.713	0.81
109_G	148_K	0.711	0.81
82_M	110_V	0.711	0.81
411_Q	415_A	0.710	0.81
70_S	103_S	0.710	0.81
255_I	320_L	0.710	0.81
281_H	357_Q	0.705	0.81
108_C	152_F	0.705	0.81
81_A	146_N	0.704	0.81
293_Y	320_L	0.703	0.80
256_S	293_Y	0.701	0.80
89_V	139_S	0.701	0.80
175_L	409_L	0.700	0.80
284_Q	287_D	0.699	0.80
405_R	409_L	0.699	0.80
82_M	89_V	0.699	0.80
23_R	109_G	0.697	0.80
197_R	201_L	0.694	0.80
202_G	415_A	0.692	0.79
23_R	43_L	0.691	0.79
164_E	423_T	0.691	0.79
294_N	316_Y	0.690	0.79
239_L	281_H	0.689	0.79
240_S	294_N	0.689	0.79
107_F	145_N	0.687	0.79
143_N	148_K	0.687	0.79
44_I	102_C	0.686	0.79
23_R	149_P	0.686	0.79
239_L	321_I	0.685	0.79
236_R	322_R	0.685	0.79
321_I	359_G	0.683	0.79
80_I	84_S	0.682	0.78
107_F	110_V	0.681	0.78
27_Y	103_S	0.679	0.78
176_L	179_V	0.679	0.78
23_R	27_Y	0.679	0.78
42_P	84_S	0.676	0.78
192_I	196_F	0.674	0.78
220_H	225_K	0.672	0.77
89_V	146_N	0.671	0.77
84_S	92_K	0.671	0.77
181_S	185_R	0.670	0.77
186_F	200_V	0.669	0.77
46_A	89_V	0.669	0.77
227_N	369_V	0.668	0.77
43_L	105_G	0.667	0.77
237_N	316_Y	0.667	0.77
23_R	26_T	0.666	0.77
182_T	395_I	0.666	0.77
180_D	184_A	0.665	0.77
180_D	183_K	0.665	0.77
193_L	198_Q	0.664	0.77
254_R	281_H	0.662	0.76
318_D	357_Q	0.662	0.76
182_T	410_T	0.659	0.76
88_S	145_N	0.658	0.76
27_Y	106_A	0.657	0.76
71_Q	84_S	0.657	0.76
237_N	281_H	0.656	0.76
374_P	377_E	0.656	0.76
241_S	293_Y	0.653	0.75
237_N	321_I	0.653	0.75
300_V	360_I	0.653	0.75
271_L	294_N	0.652	0.75
82_M	88_S	0.651	0.75
105_G	146_N	0.649	0.75
81_A	108_C	0.645	0.74
166_K	169_A	0.641	0.74
257_S	317_P	0.641	0.74
42_P	46_A	0.640	0.74
211_E	216_F	0.640	0.74
46_A	144_I	0.638	0.74
178_Q	391_Y	0.638	0.74
136_S	145_N	0.634	0.73
82_M	148_K	0.632	0.73
197_R	410_T	0.632	0.73
238_G	241_S	0.630	0.73
294_N	302_V	0.628	0.73
255_I	292_R	0.625	0.72
402_A	410_T	0.625	0.72
181_S	394_T	0.622	0.72
316_Y	359_G	0.620	0.72
257_S	294_N	0.619	0.71
23_R	146_N	0.619	0.71
134_K	137_S	0.618	0.71
252_I	359_G	0.617	0.71
208_K	221_S	0.616	0.71
239_L	292_R	0.616	0.71
15_V	126_T	0.615	0.71
243_P	315_L	0.615	0.71
199_A	412_S	0.613	0.71
92_K	107_F	0.613	0.71
104_F	139_S	0.613	0.71
196_F	199_A	0.613	0.71
117_I	159_I	0.612	0.71
84_S	132_R	0.609	0.70
283_L	316_Y	0.609	0.70
107_F	147_I	0.609	0.70
46_A	84_S	0.608	0.70
94_A	144_I	0.606	0.70
196_F	409_L	0.605	0.70
120_G	124_H	0.605	0.70
255_I	316_Y	0.600	0.69
255_I	259_R	0.599	0.69
50_Q	106_A	0.599	0.69
314_L	319_K	0.598	0.69
325_L	331_P	0.598	0.69
10_W	164_E	0.595	0.68
92_K	104_F	0.595	0.68
89_V	106_A	0.592	0.68
251_P	255_I	0.591	0.68
241_S	316_Y	0.589	0.68
84_S	106_A	0.585	0.67
23_R	29_K	0.581	0.67
185_R	196_F	0.581	0.67
43_L	46_A	0.579	0.66
178_Q	199_A	0.579	0.66
353_T	359_G	0.577	0.66
301_G	358_K	0.577	0.66
170_E	174_T	0.574	0.66
69_E	83_S	0.574	0.66
254_R	257_S	0.573	0.66
198_Q	203_G	0.573	0.66
182_T	403_L	0.572	0.65
73_I	82_M	0.572	0.65
191_Q	194_K	0.570	0.65
407_N	411_Q	0.568	0.65
291_T	300_V	0.567	0.65
25_V	70_S	0.565	0.64
241_S	315_L	0.565	0.64
201_L	381_I	0.565	0.64
77_D	104_F	0.565	0.64
292_R	365_I	0.564	0.64
183_K	407_N	0.561	0.64
190_P	195_R	0.560	0.64
347_M	351_V	0.559	0.64
26_T	107_F	0.558	0.64
90_V	105_G	0.558	0.64
45_R	84_S	0.557	0.63
186_F	190_P	0.557	0.63
412_S	418_F	0.557	0.63
300_V	317_P	0.556	0.63
88_S	106_A	0.556	0.63
93_S	123_A	0.555	0.63
241_S	321_I	0.555	0.63
256_S	319_K	0.554	0.63
223_F	374_P	0.554	0.63
178_Q	402_A	0.553	0.63
255_I	318_D	0.552	0.63
292_R	314_L	0.551	0.63
23_R	71_Q	0.548	0.62
83_S	145_N	0.546	0.62
192_I	195_R	0.545	0.62
300_V	356_G	0.544	0.62
26_T	103_S	0.544	0.62
81_A	88_S	0.544	0.62
350_C	364_D	0.544	0.62
70_S	81_A	0.543	0.61
239_L	359_G	0.542	0.61
89_V	109_G	0.542	0.61
29_K	82_M	0.540	0.61
171_K	413_I	0.539	0.61
281_H	359_G	0.539	0.61
83_S	139_S	0.539	0.61
76_E	119_S	0.538	0.61
178_Q	189_I	0.538	0.61
182_T	202_G	0.536	0.60
73_I	110_V	0.536	0.60
351_V	358_K	0.536	0.60
192_I	405_R	0.535	0.60
107_F	149_P	0.532	0.60
319_K	362_G	0.531	0.60
195_R	412_S	0.529	0.59
240_S	321_I	0.529	0.59
415_A	418_F	0.527	0.59
194_K	198_Q	0.527	0.59
196_F	200_V	0.524	0.59
45_R	145_N	0.524	0.59
92_K	139_S	0.523	0.59
241_S	277_E	0.523	0.59
70_S	108_C	0.520	0.58
113_P	119_S	0.518	0.58
27_Y	105_G	0.517	0.58
237_N	255_I	0.517	0.58
47_N	144_I	0.517	0.58
106_A	147_I	0.517	0.58
81_A	90_V	0.515	0.57
45_R	89_V	0.513	0.57
190_P	196_F	0.513	0.57
89_V	143_N	0.511	0.57
283_L	322_R	0.510	0.57
255_I	300_V	0.510	0.57
43_L	48_N	0.510	0.57
96_Q	100_F	0.510	0.57
346_A	350_C	0.509	0.57
254_R	267_D	0.508	0.56
21_L	109_G	0.506	0.56
252_I	294_N	0.506	0.56
319_K	353_T	0.506	0.56
43_L	82_M	0.505	0.56
171_K	189_I	0.505	0.56
283_L	293_Y	0.504	0.56
71_Q	82_M	0.504	0.56
314_L	317_P	0.501	0.55
27_Y	82_M	0.501	0.55
278_L	281_H	0.500	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2y7cA	1	0.9828	100	0.215	Contact Map
1yf2A	1	0.8621	100	0.387	Contact Map
3okgA	2	0.8082	100	0.408	Contact Map
1ydxA	1	0.7737	100	0.433	Contact Map
2ih2A	1	0.3276	93.6	0.943	Contact Map
3s1sA	1	0.4612	59.4	0.961	Contact Map
3h4pa	5	0.4073	13.6	0.972	Contact Map
2r9iA	1	0.1379	13.3	0.973	Contact Map
1owxA	1	0.2435	11.8	0.973	Contact Map
2xvsA	1	0.3147	11.7	0.973	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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