GREMLIN Database
MCP3 - Methyl-accepting chemotaxis protein III
UniProt: P05704 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11018
Length: 546 (503)
Sequences: 20034 (17171)
Seq/√Len: 765.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
253_G258_G3.7311.00
16_R19_P3.4371.00
239_K244_D3.3351.00
345_A348_G3.2171.00
37_A41_Y3.1571.00
239_K247_M2.6611.00
361_A435_L2.6141.00
248_N272_G2.4151.00
234_A259_R2.3131.00
365_S435_L2.3021.00
343_I347_D2.2821.00
20_L255_N2.2811.00
265_Q268_Q2.2721.00
202_M206_G2.2551.00
238_E259_R2.2401.00
152_M155_A2.2071.00
277_T515_R2.1951.00
224_R228_R2.1791.00
233_A261_S2.1161.00
326_Q329_D2.1071.00
238_E266_Q2.0891.00
368_K371_E2.0821.00
350_Q354_G2.0541.00
364_T367_K2.0391.00
199_L203_F2.0241.00
365_S431_E2.0081.00
234_A263_H1.9911.00
437_D441_D1.9571.00
223_R227_I1.9241.00
36_S208_F1.9021.00
238_E242_S1.8961.00
146_K150_N1.8911.00
198_R202_M1.8701.00
101_S105_Q1.8621.00
340_E343_I1.8561.00
374_A378_S1.8351.00
128_T132_Q1.8271.00
176_N180_K1.8241.00
237_I264_L1.8131.00
338_A348_G1.8101.00
363_S440_S1.8071.00
265_Q269_H1.7951.00
255_N258_G1.7921.00
237_I267_M1.7881.00
180_K184_T1.7881.00
39_A204_M1.7841.00
453_I464_M1.7741.00
240_I268_Q1.7671.00
459_S462_H1.7661.00
124_E128_T1.7571.00
240_I267_M1.7541.00
426_E430_S1.7521.00
371_E374_A1.7281.00
143_P146_K1.7191.00
297_A301_S1.7191.00
370_S433_V1.7151.00
508_S511_E1.6971.00
487_E490_K1.6931.00
20_L225_I1.6851.00
125_A129_E1.6801.00
448_K452_T1.6761.00
41_Y45_Q1.6671.00
259_R262_R1.6611.00
344_K452_T1.6521.00
361_A364_T1.6511.00
90_E94_R1.6421.00
458_A462_H1.6391.00
441_D445_T1.6331.00
511_E515_R1.6261.00
357_K360_G1.6251.00
333_H336_K1.6251.00
205_I209_V1.6141.00
480_Q483_Q1.6121.00
104_K108_Q1.6061.00
350_Q353_S1.6021.00
142_Q146_K1.6001.00
248_N265_Q1.5971.00
336_K339_Q1.5921.00
336_K340_E1.5901.00
413_T416_S1.5841.00
420_Q424_E1.5811.00
238_E263_H1.5751.00
206_G210_L1.5641.00
450_M453_I1.5611.00
418_S422_A1.5561.00
108_Q112_A1.5541.00
191_E195_Q1.5431.00
430_S434_R1.5431.00
248_N269_H1.5381.00
273_M277_T1.5301.00
173_D177_K1.5251.00
515_R518_E1.5181.00
105_Q109_G1.5171.00
364_T368_K1.5141.00
287_R291_E1.5091.00
237_I263_H1.5091.00
272_G276_G1.5041.00
298_D301_S1.4911.00
368_K424_E1.4871.00
121_P124_E1.4831.00
339_Q343_I1.4821.00
452_T455_D1.4751.00
233_A260_L1.4661.00
28_I215_T1.4581.00
448_K451_S1.4561.00
517_T521_D1.4531.00
122_A125_A1.4531.00
501_E504_A1.4511.00
423_K427_G1.4501.00
140_G143_P1.4421.00
248_N268_Q1.4301.00
97_A101_S1.4151.00
460_V464_M1.4091.00
231_Q234_A1.4091.00
416_S420_Q1.4031.00
514_A518_E1.4011.00
270_S522_V1.4001.00
332_H336_K1.3981.00
100_E104_K1.3971.00
455_D459_S1.3961.00
78_I82_A1.3951.00
18_V22_A1.3881.00
198_R201_G1.3881.00
377_N426_E1.3871.00
277_T519_A1.3871.00
308_A312_Q1.3851.00
177_K180_K1.3801.00
312_Q315_A1.3791.00
201_G205_I1.3641.00
102_E105_Q1.3611.00
244_D247_M1.3531.00
42_F45_Q1.3521.00
197_T201_G1.3511.00
162_E166_P1.3481.00
135_Q139_T1.3471.00
366_S436_I1.3441.00
358_T438_L1.3431.00
123_D126_L1.3361.00
479_T483_Q1.3351.00
294_A298_D1.3331.00
308_A311_E1.3301.00
93_K97_A1.3271.00
365_S368_K1.3261.00
342_S346_S1.3251.00
453_I460_V1.3151.00
176_N179_V1.3071.00
237_I260_L1.3061.00
94_R98_Q1.3001.00
107_Q111_R1.2991.00
472_D476_R1.2981.00
325_K329_D1.2971.00
219_F223_R1.2941.00
363_S437_D1.2921.00
497_S500_E1.2911.00
420_Q423_K1.2911.00
434_R438_L1.2891.00
234_A238_E1.2861.00
74_R78_I1.2851.00
490_K494_Q1.2841.00
497_S501_E1.2821.00
233_A264_L1.2811.00
500_E504_A1.2781.00
318_E322_A1.2781.00
108_Q111_R1.2721.00
446_A450_M1.2701.00
129_E133_R1.2691.00
190_A194_H1.2691.00
409_S412_R1.2681.00
143_P147_Y1.2671.00
329_D333_H1.2621.00
441_D444_A1.2621.00
279_R283_E1.2601.00
269_H273_M1.2591.00
451_S455_D1.2591.00
519_A522_V1.2471.00
34_L38_L1.2461.00
367_K437_D1.2431.00
134_F138_I1.2431.00
360_G444_A1.2411.00
232_H250_E1.2341.00
122_A126_L1.2311.00
490_K493_Q1.2301.00
235_Q238_E1.2291.00
360_G364_T1.2281.00
270_S273_M1.2241.00
16_R259_R1.2241.00
368_K431_E1.2231.00
239_K242_S1.2191.00
280_Q284_E1.2171.00
111_R131_N1.2161.00
349_G353_S1.2141.00
203_F206_G1.2101.00
98_Q101_S1.2101.00
391_A409_S1.2081.00
424_E427_G1.2051.00
129_E132_Q1.2031.00
476_R480_Q1.2001.00
146_K149_K1.1951.00
363_S367_K1.1951.00
18_V224_R1.1941.00
309_A487_E1.1941.00
109_G112_A1.1901.00
202_M205_I1.1891.00
47_D197_T1.1891.00
139_T142_Q1.1871.00
302_R491_V1.1841.00
231_Q235_Q1.1811.00
95_N98_Q1.1811.00
18_V223_R1.1801.00
38_L42_F1.1801.00
358_T439_G1.1791.00
15_I19_P1.1791.00
236_R249_D1.1751.00
251_P261_S1.1731.00
301_S304_E1.1731.00
361_A365_S1.1721.00
139_T143_P1.1641.00
290_S294_A1.1631.00
359_M439_G1.1591.00
343_I346_S1.1501.00
249_D265_Q1.1491.00
99_A102_E1.1491.00
319_Q322_A1.1471.00
268_Q272_G1.1441.00
375_V421_A1.1441.00
145_L149_K1.1421.00
301_S305_E1.1401.00
423_K426_E1.1271.00
232_H235_Q1.1261.00
242_S266_Q1.1241.00
67_S71_R1.1231.00
104_K107_Q1.1211.00
283_E517_T1.1201.00
317_M320_L1.1191.00
486_S490_K1.1111.00
280_Q283_E1.1111.00
483_Q487_E1.1111.00
347_D350_Q1.1091.00
98_Q102_E1.1071.00
62_G65_N1.1031.00
91_A95_N1.1001.00
334_A464_M1.0981.00
507_V511_E1.0981.00
131_N135_Q1.0941.00
105_Q108_Q1.0931.00
233_A237_I1.0931.00
353_S357_K1.0911.00
344_K347_D1.0911.00
51_R55_A1.0891.00
251_P265_Q1.0861.00
362_I439_G1.0841.00
477_G481_V1.0841.00
427_G431_E1.0811.00
431_E435_L1.0771.00
494_Q497_S1.0761.00
278_V520_V1.0731.00
438_L441_D1.0721.00
351_T356_V1.0711.00
357_K361_A1.0701.00
344_K348_G1.0671.00
377_N422_A1.0661.00
356_V447_G1.0661.00
305_E308_A1.0651.00
128_T131_N1.0611.00
189_L192_L1.0551.00
68_D71_R1.0501.00
195_Q199_L1.0501.00
511_E514_A1.0491.00
126_L129_E1.0471.00
79_Q82_A1.0461.00
209_V213_V1.0441.00
331_A334_A1.0441.00
518_E522_V1.0441.00
94_R97_A1.0431.00
493_Q497_S1.0431.00
491_V495_N1.0411.00
166_P170_A1.0391.00
232_H236_R1.0391.00
476_R479_T1.0361.00
17_L257_I1.0351.00
334_A348_G1.0311.00
286_Y290_S1.0301.00
514_A517_T1.0301.00
291_E294_A1.0281.00
244_D524_R1.0271.00
354_G357_K1.0251.00
306_Q316_S1.0131.00
44_W201_G1.0131.00
220_M224_R1.0121.00
25_L219_F1.0121.00
29_L215_T1.0071.00
217_I221_V1.0071.00
121_P125_A1.0041.00
234_A260_L1.0041.00
138_I142_Q1.0031.00
167_L170_A1.0011.00
75_I79_Q1.0001.00
69_F73_A0.9971.00
251_P262_R0.9971.00
377_N381_F0.9961.00
32_F35_S0.9941.00
125_A128_T0.9931.00
18_V227_I0.9911.00
417_R420_Q0.9901.00
33_A37_A0.9901.00
419_A423_K0.9901.00
180_K183_S0.9881.00
101_S104_K0.9871.00
473_E476_R0.9831.00
391_A412_R0.9801.00
235_Q239_K0.9791.00
177_K181_I0.9781.00
31_L211_A0.9781.00
132_Q136_A0.9771.00
483_Q486_S0.9751.00
216_L220_M0.9751.00
103_I106_S0.9741.00
304_E308_A0.9731.00
163_Q166_P0.9721.00
79_Q83_A0.9701.00
504_A508_S0.9671.00
518_E521_D0.9671.00
287_R290_S0.9651.00
230_L257_I0.9641.00
262_R265_Q0.9631.00
329_D332_H0.9621.00
133_R136_A0.9601.00
341_A348_G0.9601.00
327_N471_S0.9591.00
368_K428_L0.9581.00
372_I428_L0.9561.00
276_G280_Q0.9561.00
261_S265_Q0.9551.00
194_H198_R0.9551.00
346_S350_Q0.9531.00
44_W48_R0.9491.00
351_T445_T0.9481.00
61_T64_A0.9471.00
277_T280_Q0.9471.00
447_G451_S0.9471.00
43_L200_G0.9461.00
334_A338_A0.9461.00
249_D261_S0.9451.00
509_L523_F0.9421.00
469_A473_E0.9381.00
446_A453_I0.9381.00
76_N79_Q0.9371.00
283_E287_R0.9331.00
266_Q269_H0.9321.00
434_R437_D0.9301.00
41_Y44_W0.9291.00
322_A326_Q0.9271.00
427_G430_S0.9261.00
332_H472_D0.9231.00
236_R247_M0.9221.00
22_A26_G0.9201.00
164_I168_D0.9171.00
338_A341_A0.9141.00
86_I90_E0.9091.00
320_L331_A0.9091.00
358_T442_E0.9081.00
109_G113_Y0.9071.00
335_S339_Q0.9071.00
199_L202_M0.9061.00
362_I432_S0.9061.00
221_V224_R0.9051.00
266_Q270_S0.9051.00
111_R114_Q0.9031.00
38_L41_Y0.9031.00
240_I264_L0.9011.00
250_E265_Q0.9011.00
229_P253_G0.9001.00
50_Q53_V0.8981.00
311_E315_A0.8981.00
469_A472_D0.8941.00
36_S40_G0.8931.00
99_A103_I0.8901.00
228_R232_H0.8901.00
294_A297_A0.8891.00
325_K479_T0.8881.00
254_R258_G0.8881.00
136_A139_T0.8861.00
351_T354_G0.8861.00
349_G356_V0.8841.00
455_D458_A0.8841.00
120_T123_D0.8811.00
340_E344_K0.8781.00
48_R51_R0.8761.00
230_L260_L0.8721.00
103_I107_Q0.8711.00
148_A151_G0.8701.00
40_G201_G0.8681.00
225_I229_P0.8671.00
257_I261_S0.8671.00
337_L341_A0.8641.00
510_E514_A0.8641.00
361_A438_L0.8631.00
179_V183_S0.8621.00
80_A148_A0.8601.00
236_R239_K0.8581.00
141_M144_M0.8571.00
106_S109_G0.8571.00
96_I103_I0.8561.00
96_I100_E0.8531.00
290_S510_E0.8531.00
239_K267_M0.8501.00
305_E309_A0.8471.00
378_S417_R0.8471.00
245_L271_L0.8471.00
80_A84_S0.8461.00
284_E508_S0.8421.00
247_M268_Q0.8401.00
298_D302_R0.8401.00
144_M148_A0.8371.00
171_Y175_L0.8361.00
43_L47_D0.8341.00
175_L178_A0.8301.00
47_D51_R0.8291.00
182_R185_R0.8261.00
93_K149_K0.8241.00
88_E91_A0.8241.00
186_A189_L0.8201.00
289_T506_A0.8201.00
90_E93_K0.8191.00
231_Q259_R0.8191.00
309_A316_S0.8181.00
52_D56_E0.8171.00
161_S165_R0.8141.00
378_S381_F0.8131.00
69_F72_S0.8131.00
91_A94_R0.8101.00
56_E60_R0.8081.00
516_L523_F0.8071.00
35_S39_A0.8051.00
15_I23_C0.8031.00
87_A90_E0.7991.00
286_Y517_T0.7991.00
141_M145_L0.7981.00
447_G450_M0.7981.00
346_S458_A0.7971.00
147_Y150_N0.7971.00
409_S413_T0.7961.00
70_L73_A0.7941.00
42_F200_G0.7941.00
203_F207_A0.7941.00
377_N423_K0.7931.00
54_T57_I0.7921.00
296_N499_V0.7921.00
158_N162_E0.7901.00
241_A266_Q0.7871.00
24_I31_L0.7861.00
173_D176_N0.7861.00
465_Q469_A0.7841.00
338_A345_A0.7821.00
157_I160_E0.7801.00
48_R52_D0.7801.00
92_M95_N0.7791.00
236_R264_L0.7781.00
73_A76_N0.7761.00
480_Q484_A0.7751.00
504_A507_V0.7751.00
315_A318_E0.7741.00
334_A345_A0.7731.00
64_A68_D0.7721.00
155_A159_H0.7701.00
228_R231_Q0.7701.00
174_I177_K0.7681.00
246_T525_L0.7671.00
192_L196_R0.7661.00
367_K371_E0.7651.00
63_L66_S0.7611.00
25_L28_I0.7601.00
462_H465_Q0.7581.00
143_P163_Q0.7571.00
489_D493_Q0.7561.00
135_Q138_I0.7551.00
50_Q54_T0.7551.00
227_I231_Q0.7541.00
80_A83_A0.7521.00
320_L334_A0.7501.00
318_E482_S0.7491.00
450_M464_M0.7481.00
154_E157_I0.7481.00
371_E375_V0.7451.00
102_E106_S0.7401.00
267_M271_L0.7381.00
43_L46_A0.7381.00
309_A484_A0.7361.00
172_T176_N0.7361.00
417_R424_E0.7351.00
264_L268_Q0.7341.00
373_T426_E0.7341.00
36_S204_M0.7331.00
495_N499_V0.7321.00
65_N68_D0.7311.00
512_Q515_R0.7311.00
165_R169_N0.7291.00
315_A319_Q0.7291.00
226_V229_P0.7291.00
157_I161_S0.7271.00
178_A182_R0.7261.00
366_S432_S0.7261.00
73_A77_M0.7261.00
276_G279_R0.7241.00
466_E469_A0.7241.00
64_A67_S0.7241.00
169_N173_D0.7231.00
223_R226_V0.7221.00
251_P255_N0.7201.00
352_V356_V0.7201.00
513_A523_F0.7201.00
46_A50_Q0.7201.00
345_A454_V0.7191.00
133_R174_I0.7191.00
174_I181_I0.7181.00
24_I28_I0.7161.00
110_Y113_Y0.7141.00
306_Q313_T0.7131.00
89_M93_K0.7121.00
515_R519_A0.7121.00
229_P257_I0.7111.00
359_M443_V0.7101.00
49_D52_D0.7081.00
72_S75_I0.7071.00
126_L130_L0.7051.00
479_T482_S0.7021.00
496_A499_V0.7011.00
71_R74_R0.7001.00
316_S319_Q0.7001.00
264_L267_M0.6991.00
334_A341_A0.6991.00
237_I240_I0.6961.00
246_T524_R0.6941.00
373_T377_N0.6941.00
85_R88_E0.6931.00
97_A100_E0.6911.00
276_G525_L0.6891.00
75_I78_I0.6861.00
19_P23_C0.6841.00
65_N69_F0.6831.00
179_V182_R0.6831.00
433_V437_D0.6821.00
278_V516_L0.6821.00
184_T189_L0.6801.00
110_Y114_Q0.6791.00
196_R199_L0.6781.00
285_I509_L0.6771.00
507_V510_E0.6771.00
107_Q110_Y0.6761.00
132_Q135_Q0.6751.00
19_P22_A0.6751.00
306_Q320_L0.6741.00
431_E434_R0.6741.00
77_M80_A0.6731.00
147_Y152_M0.6721.00
348_G453_I0.6711.00
352_V355_V0.6711.00
96_I99_A0.6701.00
170_A173_D0.6701.00
191_E194_H0.6671.00
328_A331_A0.6641.00
124_E127_D0.6641.00
446_A449_T0.6641.00
279_R521_D0.6631.00
17_L230_L0.6631.00
462_H466_E0.6621.00
131_N134_F0.6591.00
342_S345_A0.6571.00
138_I141_M0.6571.00
45_Q49_D0.6561.00
154_E158_N0.6561.00
430_S433_V0.6531.00
106_S111_R0.6521.00
30_V33_A0.6511.00
155_A158_N0.6501.00
436_I439_G0.6481.00
193_A197_T0.6461.00
71_R75_I0.6461.00
242_S270_S0.6431.00
59_I62_G0.6421.00
62_G109_G0.6421.00
371_E424_E0.6411.00
40_G44_W0.6411.00
159_H162_E0.6401.00
53_V57_I0.6391.00
22_A223_R0.6391.00
279_R525_L0.6391.00
471_S474_Q0.6381.00
92_M96_I0.6371.00
47_D55_A0.6371.00
275_V525_L0.6341.00
482_S486_S0.6321.00
61_T65_N0.6321.00
306_Q309_A0.6321.00
497_S504_A0.6301.00
181_I184_T0.6291.00
324_V327_N0.6271.00
45_Q48_R0.6261.00
54_T59_I0.6261.00
473_E477_G0.6251.00
44_W47_D0.6251.00
354_G445_T0.6241.00
309_A312_Q0.6241.00
106_S110_Y0.6241.00
342_S461_T0.6241.00
461_T465_Q0.6231.00
39_A43_L0.6211.00
126_L181_I0.6201.00
310_I313_T0.6181.00
439_G443_V0.6171.00
327_N334_A0.6171.00
127_D131_N0.6171.00
241_A263_H0.6151.00
159_H163_Q0.6151.00
136_A140_G0.6141.00
210_L214_M0.6141.00
299_L303_T0.6131.00
279_R517_T0.6131.00
285_I512_Q0.6121.00
181_I185_R0.6121.00
355_V443_V0.6111.00
273_M276_G0.6111.00
320_L324_V0.6091.00
227_I257_I0.6091.00
327_N331_A0.6081.00
474_Q481_V0.6061.00
291_E501_E0.6061.00
299_L302_R0.6061.00
175_L179_V0.6041.00
374_A377_N0.6041.00
435_L438_L0.6031.00
520_V523_F0.6021.00
284_E287_R0.6011.00
360_G363_S0.6001.00
354_G358_T0.6001.00
213_V217_I0.5991.00
349_G454_V0.5971.00
171_Y174_I0.5931.00
29_L219_F0.5921.00
185_R189_L0.5901.00
51_R54_T0.5901.00
347_D452_T0.5891.00
320_L327_N0.5881.00
454_V458_A0.5861.00
81_G84_S0.5861.00
240_I271_L0.5841.00
298_D494_Q0.5831.00
449_T453_I0.5821.00
482_S485_I0.5821.00
58_E186_A0.5801.00
215_T219_F0.5801.00
344_K456_A0.5791.00
251_P258_G0.5771.00
381_F392_V0.5761.00
385_I392_V0.5731.00
92_M99_A0.5731.00
372_I421_A0.5731.00
77_M81_G0.5731.00
484_A487_E0.5721.00
229_P256_E0.5721.00
253_G257_I0.5721.00
356_V360_G0.5721.00
130_L134_F0.5711.00
196_R200_G0.5711.00
236_R240_I0.5711.00
174_I178_A0.5691.00
372_I429_I0.5691.00
349_G355_V0.5691.00
381_F419_A0.5681.00
127_D130_L0.5681.00
165_R168_D0.5681.00
359_M440_S0.5671.00
160_E163_Q0.5671.00
194_H197_T0.5651.00
165_R170_A0.5651.00
282_A286_Y0.5641.00
123_D127_D0.5631.00
51_R194_H0.5631.00
87_A91_A0.5621.00
137_Y140_G0.5621.00
322_A325_K0.5601.00
314_A317_M0.5571.00
457_V464_M0.5561.00
100_E107_Q0.5561.00
502_A505_A0.5551.00
44_W197_T0.5531.00
342_S458_A0.5521.00
129_E174_I0.5521.00
50_Q193_A0.5521.00
286_Y510_E0.5511.00
418_S428_L0.5491.00
238_E241_A0.5481.00
134_F137_Y0.5481.00
78_I83_A0.5461.00
312_Q480_Q0.5461.00
52_D55_A0.5461.00
107_Q113_Y0.5451.00
344_K449_T0.5451.00
225_I228_R0.5441.00
358_T435_L0.5441.00
137_Y141_M0.5421.00
337_L459_S0.5411.00
161_S164_I0.5411.00
100_E106_S0.5401.00
432_S436_I0.5401.00
192_L195_Q0.5391.00
217_I220_M0.5391.00
384_N412_R0.5361.00
331_A335_S0.5351.00
171_Y178_A0.5351.00
327_N330_N0.5341.00
258_G262_R0.5341.00
362_I436_I0.5341.00
174_I179_V0.5341.00
166_P169_N0.5331.00
335_S338_A0.5311.00
106_S114_Q0.5301.00
83_A88_E0.5281.00
501_E505_A0.5281.00
415_A418_S0.5251.00
293_S510_E0.5251.00
47_D194_H0.5231.00
170_A174_I0.5231.00
158_N161_S0.5231.00
272_G525_L0.5221.00
40_G197_T0.5221.00
68_D72_S0.5221.00
367_K370_S0.5221.00
46_A49_D0.5211.00
164_I170_A0.5211.00
156_I159_H0.5201.00
206_G209_V0.5191.00
56_E59_I0.5181.00
29_L212_L0.5161.00
509_L513_A0.5151.00
499_V506_A0.5121.00
353_S451_S0.5121.00
47_D53_V0.5111.00
459_S463_I0.5111.00
160_E164_I0.5101.00
100_E103_I0.5091.00
310_I488_M0.5081.00
349_G451_S0.5081.00
366_S372_I0.5081.00
18_V231_Q0.5081.00
388_L396_R0.5061.00
372_I418_S0.5061.00
243_G267_M0.5051.00
63_L67_S0.5041.00
498_L501_E0.5041.00
503_S507_V0.5021.00
82_A85_R0.5011.00
296_N506_A0.5011.00
281_G284_E0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zx6A 2 0.5549 100 0.37 Contact Map
1qu7A 2 0.4158 100 0.506 Contact Map
2ch7A 2 0.5147 100 0.545 Contact Map
3g67A 2 0.3901 100 0.593 Contact Map
4i3mA 2 0.2692 99.9 0.739 Contact Map
4cq4A 4 0.1575 99.6 0.826 Contact Map
2f95B 2 0.0952 99.4 0.844 Contact Map
4gycB 2 0.1117 99.3 0.856 Contact Map
3zccA 2 0.1923 98.9 0.875 Contact Map
4i5sA 2 0.5092 98.7 0.886 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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