GREMLIN Database
RECD - RecBCD enzyme subunit RecD
UniProt: P04993 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10826
Length: 608 (509)
Sequences: 3649 (2807)
Seq/√Len: 124.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
25_L28_A5.7481.00
374_I570_V5.4721.00
168_V313_I4.9061.00
551_L569_A4.4991.00
263_L266_L4.4181.00
268_V282_L3.6971.00
23_F28_A3.6521.00
547_D575_R3.4801.00
287_P290_A3.4631.00
181_V212_L3.3711.00
418_Y422_L3.2991.00
119_V276_L3.1701.00
54_P597_R3.1341.00
271_A274_I3.0461.00
274_I279_M3.0381.00
377_G563_R3.0121.00
440_L458_I3.0041.00
240_L274_I2.9551.00
371_A571_T2.8801.00
118_T280_S2.8401.00
202_A243_L2.7941.00
200_R263_L2.7791.00
482_V530_H2.7641.00
138_A159_A2.6271.00
414_G422_L2.6261.00
538_V551_L2.6201.00
437_E547_D2.5661.00
167_S353_C2.5001.00
486_R529_E2.3251.00
418_Y421_L2.2931.00
508_T512_F2.2431.00
442_C451_V2.2191.00
266_L286_L2.2151.00
378_D381_A2.1971.00
314_C352_L2.1571.00
61_N64_S2.1421.00
133_D136_L2.1331.00
122_F125_E2.1291.00
188_L265_V2.1131.00
414_G418_Y2.0701.00
420_D424_A2.0561.00
476_W501_A2.0531.00
441_L538_V2.0381.00
169_I180_T2.0371.00
151_I357_K2.0211.00
189_I218_K2.0171.00
115_N280_S2.0091.00
280_S284_D2.0001.00
512_F530_H1.9951.00
119_V283_I1.9941.00
510_V514_M1.9781.00
502_L513_A1.9781.00
141_L145_F1.9731.00
417_R420_D1.9631.00
587_S591_A1.9571.00
397_L583_E1.9041.00
151_I359_Y1.8871.00
117_R603_L1.8621.00
153_W356_Q1.8551.00
488_D491_L1.8421.00
241_H278_M1.8151.00
153_W156_V1.8141.00
123_F166_I1.8141.00
393_I396_R1.8031.00
445_R531_E1.7771.00
275_D305_E1.7721.00
480_R532_T1.7611.00
246_A253_L1.7601.00
45_D53_L1.7571.00
142_D145_F1.7491.00
143_K190_Q1.7431.00
145_F155_K1.7311.00
491_L526_R1.7291.00
442_C454_L1.7281.00
119_V279_M1.7161.00
548_H576_R1.7061.00
373_A378_D1.7031.00
198_R264_D1.7021.00
279_M283_I1.6941.00
160_V167_S1.6801.00
545_E574_R1.6611.00
502_L519_I1.6361.00
257_A284_D1.6321.00
539_H565_L1.6251.00
566_V586_L1.6221.00
358_S361_F1.6191.00
23_F27_V1.6171.00
150_E158_A1.6151.00
160_V353_C1.6111.00
547_D574_R1.6071.00
416_G422_L1.6051.00
155_K159_A1.6031.00
54_P57_R1.5961.00
370_L373_A1.5871.00
245_G255_H1.5821.00
414_G421_L1.5781.00
566_V589_A1.5681.00
299_D375_N1.5681.00
150_E183_K1.5611.00
509_R521_S1.5541.00
419_L423_Q1.5461.00
265_V293_I1.5391.00
415_Y419_L1.5361.00
202_A268_V1.5331.00
393_I398_L1.5311.00
255_H259_N1.5151.00
52_C106_R1.5131.00
481_P498_I1.4931.00
55_L105_D1.4921.00
483_M540_K1.4901.00
415_Y418_Y1.4841.00
419_L422_L1.4831.00
457_R460_Q1.4821.00
453_G456_E1.4801.00
487_N495_N1.4711.00
511_W514_M1.4691.00
511_W515_P1.4521.00
115_N277_P1.4491.00
416_G420_D1.4271.00
551_L577_L1.4191.00
85_L90_A1.3971.00
158_A180_T1.3871.00
255_H260_P1.3871.00
206_G496_G1.3841.00
106_R602_A1.3841.00
315_A601_A1.3801.00
466_R469_H1.3791.00
415_Y422_L1.3761.00
583_E587_S1.3701.00
238_S242_R1.3671.00
153_W357_K1.3661.00
411_A421_L1.3641.00
140_T187_A1.3611.00
123_F127_N1.3591.00
416_G421_L1.3581.00
418_Y423_Q1.3551.00
474_S532_T1.3461.00
179_T359_Y1.3451.00
303_S309_V1.3451.00
271_A279_M1.3351.00
81_W85_L1.3301.00
438_Y550_A1.3291.00
110_N114_C1.3251.00
142_D155_K1.3211.00
271_A294_F1.3211.00
417_R421_L1.3201.00
489_S494_F1.3141.00
201_L212_L1.3141.00
538_V569_A1.3111.00
123_F292_V1.3031.00
483_M536_M1.3031.00
485_A531_E1.3031.00
112_M115_N1.3021.00
286_L290_A1.3011.00
501_A510_V1.2951.00
459_E532_T1.2951.00
156_V160_V1.2921.00
453_G457_R1.2861.00
253_L256_H1.2831.00
411_A422_L1.2831.00
158_A183_K1.2821.00
417_R422_L1.2801.00
451_V537_T1.2741.00
85_L88_S1.2651.00
361_F368_G1.2561.00
457_R461_F1.2551.00
266_L290_A1.2501.00
109_L112_M1.2501.00
538_V565_L1.2461.00
197_C265_V1.2441.00
421_L424_A1.2441.00
301_L538_V1.2400.99
166_I292_V1.2370.99
263_L290_A1.2320.99
445_R451_V1.2310.99
508_T514_M1.2310.99
140_T143_K1.2240.99
211_R214_E1.2240.99
478_E503_D1.2120.99
144_L187_A1.2100.99
123_F319_A1.2040.99
33_P36_T1.2000.99
122_F126_V1.1970.99
80_N83_E1.1920.99
118_T121_R1.1910.99
206_G487_N1.1900.99
286_L292_V1.1840.99
125_E288_D1.1830.99
78_L82_E1.1830.99
157_A180_T1.1760.99
510_V515_P1.1750.99
51_V276_L1.1690.99
283_I292_V1.1600.99
240_L278_M1.1590.99
465_K471_H1.1520.99
510_V513_A1.1500.99
420_D423_Q1.1480.99
181_V267_V1.1450.99
464_Q477_Y1.1420.99
414_G417_R1.1410.99
411_A418_Y1.1350.99
459_E480_R1.1340.99
108_Y603_L1.1270.99
82_E89_Q1.1270.99
266_L282_L1.1260.99
298_R354_L1.1250.99
200_R266_L1.1240.99
266_L287_P1.1230.99
410_E422_L1.1230.99
550_A580_Y1.1200.99
412_L422_L1.1190.99
158_A184_L1.1130.99
204_P304_V1.1130.99
118_T284_D1.1090.99
553_L579_L1.1000.99
178_T215_S1.0970.99
161_A184_L1.0970.99
172_G175_T1.0960.99
273_M539_H1.0950.99
413_A416_G1.0940.99
488_D529_E1.0890.99
459_E477_Y1.0870.99
138_A142_D1.0860.99
481_P500_I1.0860.99
446_E452_A1.0860.99
502_L511_W1.0840.99
165_R289_H1.0830.99
415_Y423_Q1.0810.99
173_P299_D1.0760.99
599_G603_L1.0730.99
121_R125_E1.0720.99
255_H262_H1.0710.99
51_V108_Y1.0700.98
548_H578_S1.0570.98
299_D354_L1.0570.98
476_W532_T1.0540.98
147_V186_A1.0540.98
202_A240_L1.0540.98
439_Q546_F1.0520.98
156_V159_A1.0510.98
273_M301_L1.0500.98
393_I397_L1.0370.98
170_S354_L1.0350.98
161_A169_I1.0340.98
394_E397_L1.0280.98
84_C88_S1.0220.98
550_A578_S1.0200.98
482_V510_V1.0150.98
382_V590_I1.0150.98
412_L415_Y1.0140.98
512_F515_P1.0060.98
536_M541_S1.0050.98
311_G315_A1.0030.98
207_K544_S1.0010.98
256_H259_N1.0010.98
117_R121_R1.0000.98
152_N156_V0.9910.98
414_G423_Q0.9880.97
573_A577_L0.9880.97
253_L281_R0.9850.97
240_L282_L0.9810.97
411_A423_Q0.9790.97
558_T588_A0.9790.97
445_R452_A0.9760.97
67_L70_T0.9740.97
204_P497_D0.9740.97
410_E414_G0.9740.97
266_L292_V0.9700.97
273_M487_N0.9690.97
99_P102_L0.9690.97
140_T144_L0.9590.97
448_P453_G0.9580.97
599_G602_A0.9580.97
418_Y424_A0.9570.97
197_C264_D0.9560.97
588_A592_T0.9550.97
482_V512_F0.9520.97
38_A81_W0.9500.97
476_W530_H0.9500.97
253_L260_P0.9490.97
411_A415_Y0.9480.97
415_Y420_D0.9440.97
273_M540_K0.9390.97
199_I265_V0.9370.97
71_C74_E0.9360.96
140_T190_Q0.9340.96
90_A93_R0.9290.96
82_E85_L0.9290.96
484_I493_L0.9290.96
511_W521_S0.9260.96
390_F393_I0.9180.96
414_G419_L0.9170.96
202_A266_L0.9170.96
173_P545_E0.9110.96
509_R514_M0.9100.96
275_D278_M0.9090.96
182_A186_A0.9080.96
455_N535_A0.9070.96
413_A420_D0.9070.96
38_A42_L0.9020.96
476_W482_V0.9010.96
478_E504_R0.8980.96
362_G575_R0.8970.96
471_H477_Y0.8960.96
412_L420_D0.8950.95
118_T122_F0.8940.95
69_A72_V0.8930.95
166_I294_F0.8920.95
82_E86_L0.8910.95
421_L580_Y0.8910.95
165_R291_R0.8890.95
436_N500_I0.8870.95
181_V295_L0.8850.95
412_L421_L0.8830.95
301_L539_H0.8780.95
268_V294_F0.8760.95
81_W88_S0.8750.95
367_I371_A0.8750.95
570_V577_L0.8750.95
447_G450_G0.8730.95
513_A517_G0.8720.95
164_R167_S0.8680.95
206_G540_K0.8670.95
499_G540_K0.8650.95
173_P567_Y0.8650.95
510_V524_P0.8640.95
444_L447_G0.8540.94
184_L293_I0.8510.94
24_A28_A0.8510.94
440_L501_A0.8490.94
157_A169_I0.8470.94
37_L68_L0.8460.94
416_G419_L0.8450.94
454_L552_I0.8450.94
410_E416_G0.8450.94
169_I293_I0.8430.94
392_D398_L0.8390.94
46_A112_M0.8370.94
277_P281_R0.8370.94
123_F313_I0.8340.93
172_G299_D0.8330.93
508_T524_P0.8330.93
207_K497_D0.8320.93
476_W510_V0.8310.93
372_A376_R0.8300.93
584_R588_A0.8270.93
84_C90_A0.8240.93
44_H48_E0.8200.93
79_Q82_E0.8180.93
392_D396_R0.8180.93
23_F39_A0.8160.93
549_A577_L0.8160.93
139_Q143_K0.8140.93
142_D146_P0.8110.92
523_Q526_R0.8100.92
412_L416_G0.8100.92
370_L577_L0.8070.92
395_K581_A0.8060.92
358_S368_G0.8030.92
211_R272_S0.8030.92
168_V352_L0.8010.92
162_L187_A0.8000.92
200_R261_L0.8000.92
206_G539_H0.7990.92
484_I522_V0.7980.92
120_A124_N0.7910.92
206_G239_T0.7910.92
208_A273_M0.7910.92
112_M306_A0.7900.91
201_L205_T0.7890.91
432_I435_F0.7860.91
205_T278_M0.7850.91
70_T75_I0.7840.91
366_G390_F0.7840.91
122_F283_I0.7830.91
170_S298_R0.7820.91
242_R489_S0.7810.91
161_A293_I0.7790.91
177_K270_E0.7790.91
167_S293_I0.7760.91
480_R501_A0.7750.91
52_C108_Y0.7750.91
498_I533_T0.7740.91
206_G278_M0.7740.91
211_R544_S0.7730.91
205_T208_A0.7730.91
270_E300_Q0.7720.90
394_E576_R0.7720.90
111_R277_P0.7720.90
98_T101_I0.7700.90
56_S60_N0.7700.90
98_T103_C0.7690.90
23_F26_T0.7680.90
89_Q92_S0.7670.90
239_T243_L0.7660.90
392_D395_K0.7640.90
136_L140_T0.7620.90
416_G423_Q0.7610.90
411_A417_R0.7600.90
271_A310_L0.7580.90
367_I573_A0.7580.90
185_L189_I0.7580.90
84_C89_Q0.7570.90
147_V190_Q0.7550.90
273_M304_V0.7550.90
511_W519_I0.7540.89
167_S352_L0.7530.89
152_N155_K0.7520.89
541_S565_L0.7510.89
141_L144_L0.7500.89
173_P241_H0.7480.89
410_E421_L0.7470.89
83_E86_L0.7460.89
545_E568_T0.7450.89
174_G300_Q0.7440.89
369_Q373_A0.7430.89
144_L148_S0.7430.89
243_L261_L0.7410.89
59_E64_S0.7370.88
544_S568_T0.7350.88
124_N604_F0.7340.88
103_C603_L0.7330.88
211_R545_E0.7320.88
177_K300_Q0.7310.88
507_G510_V0.7240.87
380_T590_I0.7220.87
484_I499_G0.7200.87
91_V94_G0.7200.87
256_H260_P0.7190.87
170_S314_C0.7190.87
119_V309_V0.7180.87
413_A417_R0.7180.87
495_N542_Q0.7170.87
394_E398_L0.7160.87
411_A420_D0.7150.87
113_W117_R0.7130.87
302_A564_E0.7090.86
204_P239_T0.7090.86
304_V497_D0.7080.86
55_L82_E0.7080.86
264_D290_A0.7070.86
463_Q477_Y0.7060.86
441_L551_L0.7060.86
182_A216_L0.7050.86
211_R215_S0.7030.86
84_C87_A0.7030.86
152_N357_K0.7020.86
129_A165_R0.7010.86
302_A361_F0.6990.86
268_V292_V0.6990.86
119_V280_S0.6990.86
159_A163_T0.6980.86
279_M313_I0.6960.85
188_L197_C0.6950.85
120_A600_L0.6950.85
39_A42_L0.6920.85
487_N496_G0.6910.85
34_A70_T0.6900.85
444_L560_V0.6890.85
127_N351_S0.6870.85
80_N84_C0.6870.85
263_L287_P0.6870.85
493_L512_F0.6860.85
582_D585_I0.6860.85
588_A591_A0.6850.84
42_L53_L0.6850.84
267_V295_L0.6850.84
81_W84_C0.6850.84
171_G272_S0.6850.84
177_K269_D0.6840.84
178_T541_S0.6840.84
145_F149_D0.6840.84
365_S392_D0.6830.84
480_R530_H0.6830.84
386_F389_D0.6810.84
173_P497_D0.6810.84
70_T73_S0.6800.84
68_L71_C0.6800.84
74_E79_Q0.6800.84
491_L520_K0.6790.84
308_A311_G0.6790.84
241_H244_L0.6790.84
469_H475_R0.6780.84
555_S588_A0.6770.84
273_M542_Q0.6760.84
261_L264_D0.6750.84
38_A62_E0.6750.84
395_K398_L0.6740.83
171_G542_Q0.6700.83
134_E159_A0.6680.83
212_L215_S0.6660.83
60_N64_S0.6660.83
273_M302_A0.6650.83
207_K565_L0.6630.82
445_R485_A0.6630.82
585_I589_A0.6630.82
204_P273_M0.6610.82
276_L306_A0.6610.82
412_L423_Q0.6600.82
139_Q142_D0.6600.82
414_G420_D0.6590.82
277_P280_S0.6570.82
561_V589_A0.6550.82
441_L536_M0.6550.82
313_I319_A0.6540.82
239_T242_R0.6540.82
455_N540_K0.6530.82
305_E564_E0.6530.82
557_R560_V0.6520.81
42_L46_A0.6490.81
382_V586_L0.6480.81
57_R61_N0.6480.81
409_E413_A0.6470.81
522_V526_R0.6460.81
133_D138_A0.6450.81
272_S542_Q0.6430.81
256_H285_A0.6430.81
204_P455_N0.6420.80
413_A423_Q0.6420.80
83_E87_A0.6420.80
174_G177_K0.6400.80
273_M544_S0.6390.80
211_R487_N0.6390.80
30_D34_A0.6380.80
505_G508_T0.6380.80
201_L204_P0.6380.80
126_V165_R0.6370.80
313_I318_N0.6370.80
410_E413_A0.6370.80
132_V136_L0.6340.80
412_L418_Y0.6320.79
174_G270_E0.6300.79
207_K536_M0.6300.79
173_P359_Y0.6300.79
85_L93_R0.6290.79
207_K273_M0.6270.79
557_R588_A0.6250.79
247_Q250_S0.6250.79
141_L155_K0.6240.79
34_A38_A0.6230.78
76_G79_Q0.6220.78
55_L59_E0.6220.78
101_I110_N0.6210.78
546_F549_A0.6210.78
282_L286_L0.6210.78
555_S582_D0.6200.78
482_V501_A0.6200.78
286_L289_H0.6190.78
172_G211_R0.6190.78
207_K211_R0.6180.78
411_A419_L0.6180.78
365_S369_Q0.6180.78
471_H475_R0.6170.78
168_V314_C0.6160.78
32_H35_V0.6150.78
206_G209_A0.6150.78
106_R599_G0.6140.77
161_A167_S0.6140.77
172_G539_H0.6140.77
560_V599_G0.6140.77
384_T387_Q0.6140.77
295_L305_E0.6130.77
86_L93_R0.6130.77
169_I184_L0.6130.77
114_C118_T0.6120.77
551_L579_L0.6120.77
308_A598_S0.6100.77
455_N533_T0.6090.77
382_V386_F0.6060.76
560_V577_L0.6060.76
269_D300_Q0.6050.76
586_L590_I0.6050.76
138_A141_L0.6050.76
70_T74_E0.6050.76
180_T355_L0.6040.76
538_V541_S0.6040.76
59_E75_I0.6030.76
53_L58_L0.6030.76
304_V495_N0.6030.76
114_C117_R0.6030.76
313_I316_Y0.6010.76
496_G540_K0.6010.76
372_A375_N0.6000.76
309_V312_D0.6000.76
29_G32_H0.5990.76
204_P241_H0.5980.76
394_E578_S0.5980.76
163_T396_R0.5970.75
441_L549_A0.5970.75
316_Y604_F0.5960.75
283_I294_F0.5960.75
444_L538_V0.5950.75
57_R597_R0.5930.75
555_S584_R0.5930.75
366_G370_L0.5930.75
390_F394_E0.5920.75
203_A208_A0.5920.75
513_A519_I0.5920.75
243_L285_A0.5920.75
55_L107_L0.5920.75
133_D254_R0.5910.75
169_I183_K0.5910.75
318_N604_F0.5910.75
127_N166_I0.5890.74
68_L74_E0.5890.74
433_Q436_N0.5880.74
391_T394_E0.5880.74
155_K162_L0.5870.74
273_M495_N0.5870.74
300_Q360_R0.5850.74
253_L259_N0.5840.74
454_L458_I0.5840.74
434_A437_E0.5830.74
439_Q544_S0.5830.74
440_L454_L0.5820.74
169_I598_S0.5820.74
73_S76_G0.5810.73
240_L497_D0.5800.73
379_K587_S0.5800.73
272_S304_V0.5790.73
133_D140_T0.5790.73
205_T273_M0.5780.73
83_E89_Q0.5780.73
494_F497_D0.5770.73
242_R246_A0.5760.73
153_W353_C0.5760.73
207_K498_I0.5750.73
212_L246_A0.5750.73
396_R580_Y0.5740.73
368_G372_A0.5730.72
442_C452_A0.5730.72
137_L140_T0.5730.72
245_G254_R0.5730.72
380_T384_T0.5720.72
470_R478_E0.5710.72
206_G211_R0.5710.72
53_L56_S0.5700.72
413_A418_Y0.5700.72
180_T183_K0.5680.72
509_R523_Q0.5680.72
181_V215_S0.5670.72
202_A261_L0.5660.72
449_F554_P0.5650.71
265_V291_R0.5640.71
144_L183_K0.5630.71
209_A213_T0.5630.71
206_G495_N0.5630.71
498_I518_N0.5610.71
179_T183_K0.5610.71
294_F313_I0.5610.71
458_I461_F0.5610.71
301_L487_N0.5610.71
487_N542_Q0.5600.71
157_A353_C0.5600.71
204_P207_K0.5600.71
379_K590_I0.5590.71
371_A375_N0.5590.71
493_L522_V0.5590.71
373_A381_A0.5590.71
304_V596_R0.5570.70
465_K469_H0.5570.70
370_L393_I0.5560.70
273_M303_S0.5560.70
304_V542_Q0.5550.70
203_A206_G0.5540.70
570_V579_L0.5530.70
241_H245_G0.5520.70
239_T539_H0.5490.69
181_V185_L0.5480.69
533_T536_M0.5470.69
206_G565_L0.5470.69
298_R375_N0.5470.69
135_A149_D0.5450.69
205_T302_A0.5450.69
514_M517_G0.5450.69
33_P37_L0.5450.69
492_G518_N0.5440.69
137_L162_L0.5440.69
150_E577_L0.5430.68
189_I196_R0.5420.68
412_L424_A0.5420.68
108_Y113_W0.5410.68
587_S604_F0.5410.68
272_S301_L0.5400.68
176_G270_E0.5400.68
483_M488_D0.5370.68
58_L81_W0.5370.68
272_S536_M0.5370.68
104_G134_E0.5370.68
139_Q146_P0.5360.67
82_E90_A0.5350.67
303_S497_D0.5350.67
441_L541_S0.5350.67
166_I283_I0.5350.67
483_M531_E0.5340.67
127_N313_I0.5340.67
477_Y480_R0.5340.67
201_L237_A0.5330.67
31_E35_V0.5310.67
448_P556_Q0.5300.67
125_E129_A0.5280.66
151_I156_V0.5280.66
115_N281_R0.5280.66
412_L417_R0.5270.66
213_T217_G0.5270.66
211_R568_T0.5260.66
436_N439_Q0.5260.66
181_V481_P0.5260.66
276_L598_S0.5260.66
30_D33_P0.5260.66
477_Y532_T0.5250.66
81_W131_E0.5240.66
498_I546_F0.5240.66
389_D395_K0.5230.66
451_V546_F0.5230.66
210_A494_F0.5220.65
179_T439_Q0.5210.65
206_G301_L0.5190.65
175_T358_S0.5180.65
459_E534_W0.5180.65
151_I353_C0.5180.65
241_H304_V0.5180.65
442_C445_R0.5170.65
498_I536_M0.5170.65
168_V319_A0.5160.65
112_M277_P0.5160.65
379_K591_A0.5160.65
177_K360_R0.5160.65
557_R592_T0.5160.65
531_E562_T0.5140.64
415_Y424_A0.5130.64
174_G572_R0.5130.64
187_A593_R0.5130.64
317_A354_L0.5120.64
585_I588_A0.5120.64
279_M294_F0.5110.64
361_F477_Y0.5100.64
586_L600_L0.5100.64
481_P532_T0.5100.64
94_G103_C0.5090.63
41_L61_N0.5090.63
139_Q147_V0.5090.63
584_R587_S0.5080.63
185_L199_I0.5080.63
483_M496_G0.5080.63
177_K296_G0.5080.63
205_T272_S0.5080.63
208_A211_R0.5070.63
459_E493_L0.5070.63
379_K382_V0.5060.63
453_G519_I0.5050.63
439_Q481_P0.5050.63
134_E138_A0.5040.63
539_H544_S0.5030.63
89_Q93_R0.5030.63
171_G540_K0.5030.63
53_L57_R0.5020.62
380_T383_K0.5020.62
487_N539_H0.5010.62
319_A351_S0.5010.62
247_Q254_R0.5010.62
478_E501_A0.5000.62
172_G206_G0.5000.62
422_L430_L0.5000.62
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1w36D 1 0.8832 100 0.316 Contact Map
3e1sA 1 0.8174 100 0.396 Contact Map
3upuA 1 0.5855 100 0.588 Contact Map
2wjyA 1 0.8092 100 0.656 Contact Map
2xzlA 1 0.7138 100 0.659 Contact Map
2gk6A 1 0.7845 100 0.66 Contact Map
4pj3A 1 0.7747 100 0.667 Contact Map
4b3fX 1 0.7911 100 0.675 Contact Map
4c2tA 1 0.676 100 0.681 Contact Map
1pjrA 1 0.6711 100 0.686 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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