TYRB - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

TYRB - Aromatic-amino-acid aminotransferase

UniProt:	P04693	Sequences: MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11040
Length:	397 (394)
Sequences:	2295 (1376)
Seq/√Len:	69.3

ECOLI - TYRB AAT

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
149_P	166_T	4.344	1.00
111_G	210_F	4.304	1.00
361_R	365_E	3.911	1.00
79_I	245_F	3.640	1.00
51_E	307_S	3.602	1.00
78_A	300_N	3.474	1.00
172_A	206_E	3.430	1.00
168_K	204_A	3.321	1.00
190_L	198_V	3.237	1.00
164_L	201_I	3.200	1.00
305_K	309_L	3.092	1.00
329_V	387_Q	2.950	1.00
29_V	389_V	2.856	1.00
160_F	194_Q	2.848	1.00
159_R	162_D	2.798	1.00
25_R	367_G	2.791	1.00
39_E	383_T	2.744	1.00
123_G	144_E	2.696	1.00
211_L	232_I	2.646	1.00
327_V	331_S	2.640	1.00
112_A	138_F	2.592	1.00
249_F	295_V	2.585	1.00
196_D	231_A	2.578	1.00
381_L	389_V	2.552	1.00
167_L	176_V	2.445	1.00
333_E	391_K	2.429	1.00
54_A	58_A	2.419	1.00
360_D	364_E	2.393	1.00
47_Q	307_S	2.372	1.00
123_G	146_S	2.364	1.00
192_N	227_Y	2.338	1.00
128_D	147_T	2.338	1.00
164_L	197_A	2.315	1.00
203_K	235_A	2.275	1.00
160_F	164_L	2.247	1.00
360_D	372_A	2.178	1.00
158_V	188_A	2.150	1.00
51_E	55_R	2.102	1.00
149_P	165_A	2.098	1.00
109_K	113_D	2.094	1.00
200_E	235_A	2.078	1.00
55_R	297_A	2.058	1.00
197_A	200_E	2.057	1.00
81_P	86_A	2.052	1.00
361_R	366_F	2.039	1.00
55_R	301_D	2.036	1.00
361_R	396_V	2.000	1.00
329_V	332_T	1.932	1.00
96_V	260_S	1.911	1.00
233_A	239_A	1.880	1.00
196_D	227_Y	1.868	1.00
313_E	317_T	1.863	1.00
49_V	294_V	1.862	1.00
227_Y	231_A	1.854	1.00
327_V	343_L	1.854	1.00
267_E	271_R	1.832	1.00
158_V	190_L	1.826	1.00
125_W	174_S	1.813	1.00
200_E	204_A	1.804	1.00
354_L	393_F	1.783	1.00
126_V	130_T	1.780	1.00
29_V	388_R	1.776	1.00
89_P	93_Q	1.763	1.00
220_A	346_R	1.740	1.00
226_A	230_R	1.727	1.00
231_A	235_A	1.715	1.00
389_V	393_F	1.667	0.99
193_D	196_D	1.661	0.99
51_E	54_A	1.650	0.99
84_F	241_V	1.646	0.99
202_L	207_L	1.644	0.99
210_F	242_S	1.636	0.99
115_L	175_I	1.628	0.99
296_A	300_N	1.620	0.99
172_A	205_R	1.614	0.99
101_T	107_A	1.606	0.99
199_I	237_L	1.601	0.99
324_Q	328_K	1.598	0.99
161_N	197_A	1.596	0.99
109_K	283_N	1.589	0.99
365_E	395_A	1.576	0.99
110_V	280_V	1.575	0.99
306_A	310_A	1.568	0.99
80_A	98_T	1.567	0.99
321_A	383_T	1.562	0.99
135_V	147_T	1.561	0.99
366_F	395_A	1.548	0.99
149_P	159_R	1.526	0.99
208_I	240_L	1.517	0.99
27_D	388_R	1.516	0.99
329_V	333_E	1.504	0.99
77_H	81_P	1.498	0.99
356_A	372_A	1.497	0.99
38_N	42_I	1.489	0.99
46_L	315_M	1.480	0.99
19_R	363_R	1.478	0.99
340_D	344_N	1.477	0.99
23_D	369_Y	1.462	0.99
126_V	135_V	1.453	0.99
325_E	386_V	1.449	0.99
70_E	277_K	1.440	0.98
78_A	81_P	1.435	0.98
7_A	271_R	1.434	0.98
222_M	309_L	1.433	0.98
382_N	385_N	1.428	0.98
99_I	280_V	1.428	0.98
67_L	72_L	1.421	0.98
391_K	395_A	1.414	0.98
103_G	246_S	1.408	0.98
53_E	290_F	1.401	0.98
335_P	394_A	1.401	0.98
64_S	290_F	1.398	0.98
84_F	260_S	1.395	0.98
130_T	135_V	1.383	0.98
328_K	332_T	1.367	0.98
47_Q	314_E	1.355	0.98
366_F	388_R	1.350	0.98
135_V	139_A	1.347	0.98
192_N	224_E	1.327	0.97
83_L	213_I	1.317	0.97
360_D	363_R	1.307	0.97
111_G	242_S	1.300	0.97
94_Q	266_A	1.299	0.97
74_C	296_A	1.267	0.97
164_L	168_K	1.258	0.96
263_C	269_A	1.255	0.96
43_I	65_L	1.253	0.96
221_G	224_E	1.250	0.96
125_W	146_S	1.249	0.96
265_D	268_A	1.249	0.96
176_V	207_L	1.245	0.96
352_T	374_G	1.238	0.96
192_N	231_A	1.237	0.96
180_P	213_I	1.237	0.96
72_L	296_A	1.235	0.96
124_V	177_L	1.233	0.96
359_V	370_L	1.225	0.96
161_N	165_A	1.216	0.96
112_A	124_V	1.214	0.96
266_A	270_G	1.210	0.95
231_A	234_S	1.208	0.95
17_M	30_N	1.203	0.95
73_N	77_H	1.196	0.95
112_A	141_A	1.188	0.95
98_T	258_G	1.188	0.95
253_G	289_N	1.175	0.95
356_A	360_D	1.164	0.94
196_D	234_S	1.160	0.94
165_A	169_T	1.159	0.94
83_L	241_V	1.154	0.94
331_S	343_L	1.150	0.94
44_P	311_E	1.150	0.94
98_T	260_S	1.149	0.94
27_D	367_G	1.147	0.94
199_I	235_A	1.145	0.94
194_Q	197_A	1.140	0.94
78_A	296_A	1.134	0.94
127_S	148_Y	1.133	0.94
240_L	259_L	1.129	0.93
76_R	98_T	1.122	0.93
18_E	22_E	1.119	0.93
280_V	284_Y	1.116	0.93
199_I	231_A	1.110	0.93
362_L	370_L	1.108	0.93
90_V	96_V	1.104	0.93
128_D	159_R	1.099	0.93
17_M	33_I	1.097	0.92
325_E	329_V	1.093	0.92
59_Q	297_A	1.087	0.92
125_W	170_L	1.087	0.92
325_E	383_T	1.080	0.92
74_C	78_A	1.070	0.92
13_I	30_N	1.064	0.91
171_P	174_S	1.059	0.91
152_D	159_R	1.050	0.91
111_G	259_L	1.045	0.91
90_V	95_R	1.044	0.90
23_D	367_G	1.038	0.90
44_P	314_E	1.024	0.90
18_E	277_K	1.019	0.89
311_E	314_E	0.998	0.88
113_D	140_G	0.997	0.88
327_V	340_D	0.995	0.88
267_E	270_G	0.993	0.88
165_A	168_K	0.992	0.88
368_V	389_V	0.990	0.88
96_V	262_M	0.990	0.88
361_R	395_A	0.988	0.88
328_K	331_S	0.988	0.88
315_M	318_R	0.988	0.88
355_S	358_Q	0.987	0.88
115_L	124_V	0.984	0.88
201_I	205_R	0.982	0.88
101_T	259_L	0.981	0.88
47_Q	51_E	0.979	0.87
329_V	390_A	0.973	0.87
17_M	21_K	0.970	0.87
84_F	96_V	0.968	0.87
51_E	303_A	0.966	0.87
261_V	272_V	0.963	0.87
240_L	261_V	0.963	0.87
326_L	390_A	0.961	0.86
281_R	285_S	0.960	0.86
216_Q	226_A	0.959	0.86
202_L	237_L	0.957	0.86
54_A	57_N	0.955	0.86
83_L	229_I	0.954	0.86
238_P	268_A	0.954	0.86
295_V	299_L	0.952	0.86
101_T	279_T	0.947	0.86
199_I	232_I	0.946	0.86
200_E	203_K	0.939	0.85
289_N	293_Q	0.938	0.85
113_D	283_N	0.936	0.85
173_R	206_E	0.932	0.85
113_D	141_A	0.931	0.85
101_T	108_L	0.930	0.85
182_C	219_G	0.920	0.84
168_K	205_R	0.916	0.84
47_Q	311_E	0.912	0.83
386_V	390_A	0.909	0.83
387_Q	391_K	0.907	0.83
155_T	188_A	0.903	0.83
64_S	254_E	0.903	0.83
67_L	286_S	0.902	0.83
388_R	392_A	0.900	0.83
172_A	207_L	0.896	0.82
80_A	84_F	0.895	0.82
222_M	305_K	0.891	0.82
149_P	162_D	0.889	0.82
8_Y	275_Q	0.888	0.82
89_P	234_S	0.888	0.82
37_Y	43_I	0.887	0.82
79_I	243_N	0.883	0.81
219_G	346_R	0.882	0.81
62_G	293_Q	0.879	0.81
67_L	289_N	0.878	0.81
17_M	32_S	0.877	0.81
115_L	143_F	0.875	0.81
27_D	391_K	0.875	0.81
198_V	201_I	0.875	0.81
56_L	294_V	0.872	0.81
53_E	64_S	0.870	0.80
35_L	43_I	0.869	0.80
49_V	298_V	0.869	0.80
356_A	359_V	0.866	0.80
216_Q	243_N	0.865	0.80
167_L	201_I	0.860	0.80
261_V	276_L	0.860	0.80
108_L	138_F	0.859	0.80
198_V	202_L	0.859	0.80
202_L	232_I	0.857	0.79
52_A	55_R	0.855	0.79
162_D	166_T	0.855	0.79
74_C	300_N	0.854	0.79
13_I	371_I	0.854	0.79
270_G	273_L	0.850	0.79
110_V	279_T	0.849	0.79
152_D	161_N	0.845	0.78
168_K	197_A	0.844	0.78
70_E	76_R	0.839	0.78
151_Y	188_A	0.838	0.78
294_V	297_A	0.836	0.78
321_A	325_E	0.834	0.78
212_D	215_Y	0.834	0.78
136_A	282_R	0.834	0.78
307_S	310_A	0.834	0.78
160_F	197_A	0.829	0.77
243_N	258_G	0.829	0.77
104_G	285_S	0.828	0.77
196_D	235_A	0.828	0.77
368_V	392_A	0.828	0.77
97_A	269_A	0.827	0.77
359_V	363_R	0.825	0.77
143_F	177_L	0.823	0.77
48_A	312_V	0.823	0.77
56_L	297_A	0.820	0.76
37_Y	65_L	0.818	0.76
174_S	207_L	0.815	0.76
5_V	275_Q	0.815	0.76
45_Q	50_A	0.814	0.76
160_F	201_I	0.813	0.76
223_E	226_A	0.809	0.75
74_C	77_H	0.804	0.75
223_E	230_R	0.802	0.75
135_V	145_V	0.799	0.74
249_F	299_L	0.797	0.74
306_A	309_L	0.797	0.74
79_I	258_G	0.796	0.74
131_W	349_F	0.795	0.74
15_T	19_R	0.792	0.74
81_P	305_K	0.789	0.74
215_Y	255_R	0.783	0.73
331_S	340_D	0.783	0.73
215_Y	247_K	0.782	0.73
166_T	169_T	0.782	0.73
176_V	202_L	0.775	0.72
5_V	114_F	0.774	0.72
121_E	175_I	0.771	0.72
212_D	247_K	0.770	0.72
16_L	363_R	0.768	0.71
388_R	391_K	0.766	0.71
184_N	247_K	0.765	0.71
192_N	196_D	0.759	0.71
326_L	386_V	0.759	0.71
101_T	110_V	0.757	0.70
40_D	384_A	0.756	0.70
107_A	242_S	0.752	0.70
34_G	255_R	0.751	0.70
351_Y	373_S	0.751	0.70
80_A	260_S	0.747	0.69
81_P	300_N	0.747	0.69
191_T	194_Q	0.744	0.69
178_L	202_L	0.741	0.69
325_E	328_K	0.740	0.69
255_R	281_R	0.740	0.69
243_N	339_F	0.739	0.69
139_A	144_E	0.739	0.69
263_C	272_V	0.736	0.68
34_G	215_Y	0.735	0.68
138_F	145_V	0.729	0.68
124_V	175_I	0.729	0.68
247_K	375_R	0.728	0.67
357_A	360_D	0.726	0.67
7_A	274_G	0.722	0.67
104_G	107_A	0.720	0.67
126_V	145_V	0.716	0.66
167_L	202_L	0.716	0.66
90_V	233_A	0.715	0.66
138_F	143_F	0.712	0.66
151_Y	156_N	0.712	0.66
302_E	306_A	0.710	0.65
345_Q	351_Y	0.707	0.65
70_E	273_L	0.704	0.65
48_A	307_S	0.699	0.64
75_Y	249_F	0.698	0.64
5_V	118_Y	0.697	0.64
84_F	262_M	0.696	0.64
247_K	255_R	0.696	0.64
82_L	222_M	0.693	0.64
111_G	240_L	0.692	0.63
109_K	141_A	0.689	0.63
298_V	304_L	0.684	0.63
109_K	140_G	0.684	0.63
150_W	163_L	0.683	0.62
328_K	343_L	0.683	0.62
97_A	263_C	0.683	0.62
385_N	388_R	0.682	0.62
378_V	381_L	0.679	0.62
172_A	204_A	0.678	0.62
117_R	140_G	0.678	0.62
35_L	65_L	0.677	0.62
319_I	322_M	0.673	0.61
317_T	321_A	0.673	0.61
12_P	15_T	0.670	0.61
184_N	255_R	0.669	0.61
298_V	329_V	0.666	0.61
288_P	291_G	0.665	0.60
182_C	346_R	0.665	0.60
150_W	189_D	0.664	0.60
9_A	274_G	0.663	0.60
14_L	286_S	0.662	0.60
215_Y	281_R	0.662	0.60
225_D	230_R	0.661	0.60
338_N	344_N	0.660	0.60
52_A	297_A	0.656	0.59
167_L	174_S	0.655	0.59
140_G	282_R	0.654	0.59
114_F	276_L	0.654	0.59
119_F	175_I	0.653	0.59
7_A	270_G	0.652	0.59
313_E	320_L	0.650	0.59
115_L	208_I	0.649	0.59
87_D	92_K	0.649	0.59
338_N	341_Y	0.648	0.58
268_A	271_R	0.647	0.58
184_N	215_Y	0.647	0.58
321_A	324_Q	0.646	0.58
105_S	137_I	0.641	0.58
64_S	311_E	0.641	0.58
87_D	234_S	0.640	0.57
121_E	173_R	0.640	0.57
139_A	278_A	0.637	0.57
168_K	201_I	0.636	0.57
110_V	283_N	0.634	0.57
302_E	305_K	0.633	0.57
303_A	307_S	0.632	0.57
310_A	314_E	0.632	0.57
161_N	164_L	0.630	0.56
341_Y	353_G	0.630	0.56
131_W	247_K	0.628	0.56
284_Y	311_E	0.627	0.56
29_V	385_N	0.626	0.56
201_I	204_A	0.624	0.56
114_F	118_Y	0.624	0.56
222_M	312_V	0.623	0.55
362_L	365_E	0.623	0.55
8_Y	105_S	0.623	0.55
170_L	176_V	0.623	0.55
90_V	93_Q	0.622	0.55
124_V	143_F	0.621	0.55
253_G	377_C	0.620	0.55
366_F	396_V	0.619	0.55
223_E	309_L	0.619	0.55
65_L	339_F	0.619	0.55
2_F	119_F	0.618	0.55
37_Y	250_S	0.618	0.55
180_P	228_A	0.615	0.55
309_L	313_E	0.615	0.55
46_L	218_F	0.614	0.54
239_A	262_M	0.612	0.54
68_P	236_G	0.610	0.54
88_H	96_V	0.609	0.54
320_L	324_Q	0.608	0.54
52_A	304_L	0.608	0.54
255_R	285_S	0.608	0.54
334_M	394_A	0.607	0.54
214_A	247_K	0.606	0.53
160_F	198_V	0.606	0.53
319_I	348_M	0.605	0.53
79_I	98_T	0.603	0.53
133_N	281_R	0.603	0.53
312_V	316_R	0.603	0.53
97_A	260_S	0.602	0.53
123_G	174_S	0.602	0.53
155_T	332_T	0.602	0.53
340_D	343_L	0.601	0.53
227_Y	352_T	0.600	0.53
75_Y	79_I	0.598	0.52
119_F	122_S	0.598	0.52
35_L	377_C	0.596	0.52
3_Q	6_D	0.593	0.52
363_R	370_L	0.592	0.52
120_P	175_I	0.592	0.52
243_N	260_S	0.591	0.52
30_N	68_P	0.590	0.52
180_P	248_I	0.590	0.52
331_S	338_N	0.590	0.52
203_K	237_L	0.590	0.52
97_A	276_L	0.589	0.51
127_S	241_V	0.589	0.51
88_H	91_L	0.588	0.51
43_I	250_S	0.587	0.51
167_L	198_V	0.587	0.51
354_L	358_Q	0.586	0.51
34_G	131_W	0.586	0.51
34_G	212_D	0.585	0.51
55_R	59_Q	0.585	0.51
48_A	52_A	0.585	0.51
191_T	266_A	0.584	0.51
146_S	166_T	0.583	0.51
157_G	188_A	0.583	0.51
168_K	203_K	0.582	0.51
34_G	214_A	0.582	0.51
6_D	328_K	0.581	0.50
326_L	370_L	0.581	0.50
13_I	17_M	0.580	0.50
61_H	289_N	0.580	0.50
245_F	260_S	0.578	0.50
132_E	135_V	0.577	0.50
56_L	301_D	0.575	0.50
303_A	306_A	0.574	0.50
15_T	180_P	0.574	0.50
131_W	212_D	0.573	0.49
368_V	388_R	0.573	0.49
279_T	283_N	0.572	0.49
103_G	243_N	0.571	0.49
69_M	280_V	0.570	0.49
170_L	207_L	0.569	0.49
43_I	64_S	0.568	0.49
158_V	163_L	0.568	0.49
151_Y	218_F	0.567	0.49
171_P	207_L	0.567	0.49
176_V	209_P	0.566	0.49
15_T	105_S	0.566	0.49
131_W	375_R	0.565	0.48
132_E	282_R	0.563	0.48
112_A	126_V	0.560	0.48
156_N	337_R	0.560	0.48
131_W	215_Y	0.560	0.48
131_W	214_A	0.558	0.48
8_Y	274_G	0.558	0.48
17_M	20_F	0.558	0.48
224_E	246_S	0.557	0.48
196_D	200_E	0.557	0.48
182_C	316_R	0.555	0.47
131_W	255_R	0.554	0.47
97_A	270_G	0.552	0.47
196_D	199_I	0.551	0.47
163_L	190_L	0.551	0.47
37_Y	243_N	0.551	0.47
325_E	387_Q	0.551	0.47
313_E	316_R	0.550	0.47
324_Q	343_L	0.550	0.47
75_Y	258_G	0.548	0.46
112_A	137_I	0.546	0.46
161_N	194_Q	0.546	0.46
215_Y	349_F	0.546	0.46
83_L	90_V	0.546	0.46
199_I	228_A	0.545	0.46
97_A	273_L	0.545	0.46
197_A	201_I	0.544	0.46
228_A	231_A	0.544	0.46
217_G	225_D	0.544	0.46
293_Q	296_A	0.544	0.46
179_H	246_S	0.543	0.46
25_R	388_R	0.542	0.46
213_I	243_N	0.541	0.46
184_N	212_D	0.541	0.46
366_F	392_A	0.541	0.46
200_E	302_E	0.541	0.46
214_A	349_F	0.541	0.46
105_S	210_F	0.540	0.45
110_V	143_F	0.540	0.45
26_S	367_G	0.540	0.45
20_F	32_S	0.539	0.45
32_S	371_I	0.539	0.45
199_I	202_L	0.538	0.45
111_G	115_L	0.538	0.45
116_K	122_S	0.537	0.45
103_G	377_C	0.536	0.45
75_Y	198_V	0.536	0.45
43_I	46_L	0.536	0.45
152_D	303_A	0.535	0.45
108_L	284_Y	0.535	0.45
184_N	214_A	0.534	0.45
83_L	243_N	0.533	0.45
333_E	394_A	0.533	0.45
115_L	240_L	0.533	0.45
110_V	272_V	0.532	0.45
266_A	314_E	0.531	0.44
34_G	247_K	0.531	0.44
113_D	279_T	0.529	0.44
236_G	239_A	0.529	0.44
224_E	316_R	0.529	0.44
121_E	144_E	0.528	0.44
29_V	381_L	0.528	0.44
7_A	10_G	0.526	0.44
163_L	198_V	0.526	0.44
84_F	98_T	0.526	0.44
39_E	384_A	0.526	0.44
199_I	203_K	0.525	0.44
359_V	371_I	0.525	0.44
124_V	298_V	0.524	0.44
212_D	375_R	0.524	0.44
210_F	240_L	0.523	0.43
160_F	190_L	0.522	0.43
11_D	15_T	0.521	0.43
6_D	118_Y	0.521	0.43
34_G	281_R	0.520	0.43
43_I	63_A	0.519	0.43
131_W	184_N	0.519	0.43
53_E	57_N	0.519	0.43
124_V	138_F	0.518	0.43
232_I	236_G	0.518	0.43
46_L	312_V	0.517	0.43
225_D	308_W	0.517	0.43
167_L	207_L	0.517	0.43
43_I	182_C	0.516	0.43
182_C	220_A	0.515	0.43
212_D	255_R	0.514	0.42
249_F	304_L	0.513	0.42
18_E	21_K	0.512	0.42
378_V	396_V	0.511	0.42
176_V	201_I	0.511	0.42
152_D	155_T	0.511	0.42
159_R	165_A	0.511	0.42
79_I	260_S	0.509	0.42
381_L	385_N	0.508	0.42
86_A	234_S	0.508	0.42
132_E	136_A	0.508	0.42
25_R	33_I	0.507	0.42
179_H	216_Q	0.507	0.42
70_E	73_N	0.506	0.41
75_Y	245_F	0.506	0.41
91_L	351_Y	0.506	0.41
310_A	313_E	0.506	0.41
10_G	105_S	0.506	0.41
209_P	238_P	0.505	0.41
34_G	184_N	0.505	0.41
127_S	151_Y	0.504	0.41
99_I	210_F	0.503	0.41
214_A	375_R	0.503	0.41
316_R	339_F	0.503	0.41
114_F	275_Q	0.502	0.41
213_I	216_Q	0.501	0.41
21_K	63_A	0.501	0.41
370_L	374_G	0.501	0.41
211_L	248_I	0.500	0.41
16_L	29_V	0.500	0.41
136_A	278_A	0.500	0.41

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mebA	2	1	100	0.563	Contact Map
1yaaA	2	1	100	0.565	Contact Map
3k7yA	2	0.9924	100	0.594	Contact Map
1ajsA	2	1	100	0.595	Contact Map
4w5kA	2	0.9496	100	0.595	Contact Map
4wd2A	2	0.9899	100	0.599	Contact Map
4rkcA	2	0.9975	100	0.604	Contact Map
2q7wA	2	0.9471	100	0.605	Contact Map
2ay1A	2	0.9899	100	0.609	Contact Map
3fslA	2	0.9975	100	0.61	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0121 seconds.