FRSA - ECOLI - GREMLIN Contacts

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FRSA - Esterase FrsA

UniProt:	P04335	Sequences: MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEDDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11091
Length:	414 (321)
Sequences:	1179 (882)
Seq/√Len:	49.2

ECOLI - FRSA
BACSU - YUXL
HALSA - Q9HN07 Q9HS46
SULSO - Q97VD6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
268_A	409_I	4.020	1.00
263_D	266_R	3.864	1.00
223_I	410_E	3.796	1.00
169_R	187_M	3.691	1.00
283_A	293_V	3.388	1.00
172_E	180_P	3.254	1.00
188_P	224_A	3.222	1.00
288_P	355_P	3.071	1.00
254_K	289_R	2.966	1.00
221_R	410_E	2.877	1.00
174_T	180_P	2.807	1.00
279_A	293_V	2.784	1.00
196_T	224_A	2.774	1.00
255_A	259_V	2.748	1.00
169_R	259_V	2.653	1.00
294_A	409_I	2.619	1.00
323_S	326_G	2.575	1.00
378_T	384_G	2.566	1.00
198_L	290_L	2.535	1.00
185_L	226_L	2.533	1.00
349_L	352_R	2.352	1.00
255_A	258_N	2.351	1.00
171_M	183_G	2.335	1.00
280_V	295_C	2.316	1.00
196_T	226_L	2.314	1.00
188_P	194_F	2.262	1.00
117_D	407_D	2.172	1.00
265_T	291_K	2.157	1.00
207_Q	210_Y	2.153	1.00
318_L	323_S	2.107	1.00
292_A	357_P	2.092	1.00
197_V	409_I	2.078	1.00
173_F	183_G	2.047	1.00
85_L	104_Q	2.044	1.00
257_P	264_H	2.029	1.00
315_E	319_D	1.932	0.99
285_L	349_L	1.912	0.99
106_M	132_Y	1.905	0.99
311_Q	315_E	1.870	0.99
292_A	409_I	1.854	0.99
268_A	292_A	1.835	0.99
186_H	227_T	1.835	0.99
338_E	341_R	1.828	0.99
194_F	224_A	1.818	0.99
196_T	262_V	1.814	0.99
366_D	394_V	1.806	0.99
316_M	321_L	1.784	0.99
193_P	196_T	1.737	0.99
223_I	409_I	1.715	0.98
109_Q	156_A	1.701	0.98
198_L	226_L	1.695	0.98
171_M	226_L	1.654	0.98
316_M	323_S	1.629	0.98
116_D	121_S	1.604	0.98
231_P	248_L	1.604	0.98
338_E	342_Y	1.589	0.97
363_W	369_S	1.565	0.97
112_A	121_S	1.563	0.97
253_L	267_V	1.562	0.97
392_N	395_Y	1.561	0.97
250_Q	254_K	1.557	0.97
201_G	205_A	1.557	0.97
175_V	251_H	1.536	0.97
196_T	256_L	1.532	0.97
196_T	267_V	1.531	0.97
132_Y	135_A	1.508	0.97
375_R	379_S	1.504	0.96
246_S	281_R	1.503	0.96
279_A	283_A	1.488	0.96
230_M	233_V	1.482	0.96
193_P	258_N	1.474	0.96
311_Q	314_P	1.465	0.96
235_F	238_K	1.456	0.96
185_L	259_V	1.442	0.95
319_D	323_S	1.434	0.95
301_H	373_D	1.433	0.95
173_F	252_V	1.419	0.95
385_K	411_K	1.413	0.95
293_V	356_T	1.406	0.95
389_I	400_K	1.402	0.95
122_G	164_L	1.401	0.95
378_T	386_L	1.380	0.94
273_R	394_V	1.367	0.94
371_E	375_R	1.356	0.94
275_G	366_D	1.349	0.94
401_G	405_I	1.349	0.94
238_K	242_T	1.346	0.93
387_L	404_E	1.338	0.93
173_F	228_I	1.320	0.93
350_L	377_I	1.316	0.93
360_S	386_L	1.312	0.93
195_P	266_R	1.306	0.92
294_A	359_L	1.304	0.92
146_A	154_N	1.301	0.92
293_V	358_M	1.286	0.92
193_P	291_K	1.279	0.92
185_L	255_A	1.273	0.91
149_A	152_L	1.273	0.91
284_Y	354_C	1.273	0.91
145_L	156_A	1.265	0.91
89_V	96_N	1.246	0.90
310_Q	313_V	1.238	0.90
148_Q	151_A	1.225	0.90
314_P	323_S	1.224	0.90
301_H	304_L	1.223	0.90
230_M	245_S	1.220	0.90
371_E	388_E	1.219	0.89
304_L	376_L	1.218	0.89
201_G	229_D	1.211	0.89
185_L	262_V	1.206	0.89
117_D	130_T	1.206	0.89
189_K	194_F	1.194	0.88
160_A	164_L	1.191	0.88
100_E	103_T	1.179	0.88
234_G	267_V	1.178	0.88
145_L	148_Q	1.162	0.87
171_M	255_A	1.159	0.87
301_H	343_S	1.151	0.87
390_P	394_V	1.150	0.87
280_V	377_I	1.148	0.86
253_L	286_E	1.141	0.86
107_V	258_N	1.139	0.86
185_L	224_A	1.139	0.86
239_W	243_Q	1.133	0.86
284_Y	377_I	1.123	0.85
286_E	289_R	1.120	0.85
109_Q	152_L	1.113	0.85
95_G	99_Y	1.110	0.85
271_G	276_A	1.108	0.84
226_L	256_L	1.107	0.84
224_A	261_W	1.106	0.84
290_L	356_T	1.102	0.84
344_L	349_L	1.096	0.84
156_A	160_A	1.081	0.83
320_V	323_S	1.078	0.83
185_L	261_W	1.071	0.82
87_D	95_G	1.068	0.82
110_Q	113_C	1.065	0.82
244_D	247_L	1.065	0.82
250_Q	286_E	1.064	0.82
214_Y	268_A	1.062	0.82
333_E	337_V	1.060	0.82
320_V	324_R	1.057	0.81
320_V	326_G	1.053	0.81
88_T	100_E	1.050	0.81
316_M	319_D	1.047	0.81
301_H	376_L	1.045	0.81
273_R	276_A	1.045	0.81
195_P	263_D	1.045	0.81
311_Q	318_L	1.042	0.81
204_D	231_P	1.040	0.80
375_R	388_E	1.039	0.80
233_V	253_L	1.038	0.80
150_Q	154_N	1.037	0.80
246_S	277_N	1.032	0.80
254_K	408_W	1.027	0.80
316_M	320_V	1.021	0.79
381_S	384_G	1.019	0.79
218_F	406_T	1.013	0.79
97_W	112_A	1.011	0.79
249_H	282_L	1.008	0.78
360_S	374_S	1.006	0.78
207_Q	227_T	1.005	0.78
297_G	368_F	1.001	0.78
148_Q	156_A	0.996	0.77
380_S	383_D	0.992	0.77
201_G	230_M	0.989	0.77
121_S	128_A	0.985	0.77
148_Q	152_L	0.982	0.76
362_Y	372_E	0.980	0.76
390_P	395_Y	0.976	0.76
183_G	226_L	0.973	0.76
273_R	363_W	0.972	0.76
267_V	291_K	0.970	0.76
176_P	251_H	0.968	0.75
400_K	404_E	0.968	0.75
246_S	282_L	0.966	0.75
367_P	393_P	0.965	0.75
297_G	344_L	0.964	0.75
298_P	369_S	0.962	0.75
316_M	325_L	0.959	0.75
228_I	252_V	0.948	0.74
395_Y	405_I	0.946	0.74
270_F	294_A	0.936	0.73
391_F	395_Y	0.927	0.72
157_Y	186_H	0.924	0.72
153_S	156_A	0.924	0.72
272_F	296_L	0.923	0.72
319_D	326_G	0.919	0.72
134_I	137_Y	0.918	0.71
280_V	358_M	0.917	0.71
239_W	242_T	0.914	0.71
90_I	93_R	0.912	0.71
312_Q	315_E	0.911	0.71
389_I	408_W	0.908	0.71
281_R	284_Y	0.907	0.71
139_H	145_L	0.907	0.71
331_S	334_A	0.900	0.70
363_W	394_V	0.882	0.68
304_L	350_L	0.882	0.68
277_N	284_Y	0.880	0.68
317_Y	321_L	0.880	0.68
191_D	387_L	0.880	0.68
314_P	320_V	0.879	0.68
202_G	230_M	0.879	0.68
335_L	339_L	0.877	0.68
147_E	151_A	0.875	0.68
159_E	162_Q	0.873	0.68
270_F	296_L	0.872	0.67
315_E	318_L	0.869	0.67
297_G	366_D	0.864	0.67
354_C	357_P	0.856	0.66
318_L	326_G	0.855	0.66
150_Q	229_D	0.851	0.66
237_S	240_K	0.851	0.66
331_S	335_L	0.849	0.65
385_K	388_E	0.848	0.65
321_L	325_L	0.846	0.65
144_D	148_Q	0.845	0.65
216_R	268_A	0.843	0.65
314_P	321_L	0.843	0.65
159_E	197_V	0.841	0.65
229_D	236_S	0.841	0.65
127_H	131_L	0.840	0.65
185_L	188_P	0.840	0.65
203_L	274_F	0.838	0.64
263_D	292_A	0.833	0.64
198_L	253_L	0.832	0.64
117_D	120_L	0.831	0.64
201_G	204_D	0.829	0.64
283_A	356_T	0.827	0.63
286_E	290_L	0.824	0.63
294_A	405_I	0.823	0.63
277_N	281_R	0.818	0.62
319_D	324_R	0.817	0.62
204_D	230_M	0.817	0.62
95_G	103_T	0.816	0.62
145_L	149_A	0.812	0.62
110_Q	258_N	0.809	0.62
318_L	325_L	0.806	0.61
366_D	369_S	0.803	0.61
201_G	248_L	0.802	0.61
250_Q	288_P	0.798	0.61
186_H	219_A	0.798	0.61
407_D	410_E	0.796	0.60
115_E	118_P	0.796	0.60
245_S	248_L	0.793	0.60
90_I	96_N	0.793	0.60
273_R	366_D	0.792	0.60
158_E	170_Q	0.790	0.60
88_T	95_G	0.788	0.60
133_N	209_D	0.788	0.60
317_Y	320_V	0.786	0.59
381_S	408_W	0.781	0.59
202_G	276_A	0.776	0.58
175_V	234_G	0.775	0.58
203_L	206_M	0.774	0.58
102_A	109_Q	0.773	0.58
403_Q	407_D	0.772	0.58
109_Q	132_Y	0.771	0.58
272_F	395_Y	0.770	0.58
133_N	138_P	0.769	0.58
169_R	172_E	0.768	0.58
362_Y	371_E	0.766	0.57
318_L	321_L	0.764	0.57
335_L	338_E	0.762	0.57
291_K	339_L	0.762	0.57
330_A	334_A	0.761	0.57
205_A	241_L	0.760	0.57
153_S	160_A	0.760	0.57
282_L	286_E	0.757	0.57
203_L	368_F	0.753	0.56
271_G	275_G	0.752	0.56
197_V	359_L	0.750	0.56
97_W	101_W	0.749	0.56
203_L	248_L	0.747	0.56
399_D	403_Q	0.743	0.55
318_L	322_A	0.742	0.55
200_C	363_W	0.738	0.55
152_L	155_R	0.734	0.54
136_A	139_H	0.726	0.53
157_Y	161_A	0.725	0.53
112_A	128_A	0.723	0.53
168_M	186_H	0.720	0.53
142_G	161_A	0.718	0.53
247_L	251_H	0.712	0.52
274_F	363_W	0.711	0.52
201_G	233_V	0.710	0.52
297_G	363_W	0.708	0.52
169_R	409_I	0.707	0.51
385_K	408_W	0.706	0.51
324_R	327_M	0.703	0.51
272_F	297_G	0.701	0.51
106_M	109_Q	0.699	0.51
202_G	273_R	0.699	0.51
95_G	98_I	0.698	0.51
106_M	152_L	0.695	0.50
105_A	132_Y	0.694	0.50
271_G	366_D	0.693	0.50
178_G	354_C	0.690	0.50
256_L	334_A	0.689	0.50
80_R	83_D	0.688	0.50
274_F	369_S	0.685	0.49
379_S	384_G	0.685	0.49
363_W	368_F	0.681	0.49
102_A	106_M	0.680	0.49
149_A	156_A	0.680	0.49
224_A	262_V	0.679	0.49
202_G	275_G	0.678	0.49
142_G	146_A	0.676	0.48
258_N	265_T	0.672	0.48
154_N	159_E	0.670	0.48
298_P	372_E	0.669	0.48
152_L	156_A	0.666	0.47
175_V	181_I	0.664	0.47
362_Y	366_D	0.664	0.47
364_K	371_E	0.664	0.47
215_E	227_T	0.660	0.47
102_A	149_A	0.659	0.47
217_Y	402_L	0.656	0.46
168_M	184_F	0.656	0.46
125_W	159_E	0.654	0.46
80_R	267_V	0.650	0.46
236_S	344_L	0.650	0.46
269_A	282_L	0.648	0.45
175_V	179_A	0.647	0.45
107_V	111_K	0.647	0.45
146_A	153_S	0.645	0.45
268_A	294_A	0.644	0.45
310_Q	367_P	0.641	0.45
321_L	324_R	0.640	0.45
279_A	358_M	0.640	0.45
171_M	198_L	0.638	0.44
253_L	370_P	0.638	0.44
169_R	394_V	0.637	0.44
80_R	93_R	0.637	0.44
299_V	332_D	0.636	0.44
246_S	289_R	0.635	0.44
95_G	145_L	0.635	0.44
105_A	128_A	0.634	0.44
96_N	99_Y	0.631	0.44
155_R	343_S	0.630	0.44
154_N	157_Y	0.629	0.44
171_M	174_T	0.626	0.43
161_A	164_L	0.625	0.43
272_F	295_C	0.621	0.43
143_D	148_Q	0.619	0.43
176_P	179_A	0.618	0.42
232_S	363_W	0.617	0.42
291_K	357_P	0.616	0.42
288_P	356_T	0.616	0.42
310_Q	314_P	0.614	0.42
315_E	326_G	0.614	0.42
125_W	174_T	0.614	0.42
259_V	265_T	0.613	0.42
155_R	164_L	0.612	0.42
94_G	108_W	0.611	0.42
248_L	252_V	0.611	0.42
254_K	258_N	0.609	0.42
112_A	137_Y	0.608	0.41
255_A	267_V	0.604	0.41
81_T	85_L	0.604	0.41
317_Y	323_S	0.599	0.41
280_V	293_V	0.598	0.41
141_K	145_L	0.597	0.40
154_N	160_A	0.597	0.40
203_L	278_V	0.597	0.40
169_R	261_W	0.596	0.40
281_R	286_E	0.595	0.40
310_Q	316_M	0.593	0.40
237_S	248_L	0.592	0.40
212_S	218_F	0.590	0.40
205_A	406_T	0.589	0.40
144_D	151_A	0.588	0.40
233_V	245_S	0.586	0.39
304_L	373_D	0.586	0.39
297_G	369_S	0.585	0.39
113_C	162_Q	0.585	0.39
299_V	373_D	0.584	0.39
110_Q	114_A	0.584	0.39
197_V	366_D	0.583	0.39
281_R	285_L	0.582	0.39
230_M	248_L	0.581	0.39
130_T	133_N	0.580	0.39
94_G	137_Y	0.580	0.39
115_E	119_Q	0.580	0.39
182_T	205_A	0.579	0.39
148_Q	154_N	0.579	0.39
274_F	279_A	0.579	0.39
172_E	183_G	0.578	0.39
88_T	243_Q	0.578	0.39
86_Y	91_G	0.578	0.39
186_H	215_E	0.577	0.38
275_G	363_W	0.577	0.38
330_A	338_E	0.575	0.38
151_A	156_A	0.575	0.38
140_L	146_A	0.574	0.38
98_I	124_H	0.574	0.38
113_C	125_W	0.573	0.38
118_P	159_E	0.569	0.38
284_Y	349_L	0.568	0.38
189_K	265_T	0.568	0.38
269_A	290_L	0.567	0.38
204_D	248_L	0.566	0.37
156_A	159_E	0.566	0.37
89_V	97_W	0.563	0.37
357_P	381_S	0.563	0.37
229_D	401_G	0.562	0.37
370_P	376_L	0.561	0.37
296_L	401_G	0.559	0.37
262_V	299_V	0.558	0.37
288_P	293_V	0.556	0.36
134_I	252_V	0.556	0.36
189_K	220_P	0.556	0.36
117_D	410_E	0.554	0.36
93_R	133_N	0.554	0.36
94_G	113_C	0.551	0.36
100_E	135_A	0.551	0.36
203_L	335_L	0.550	0.36
346_V	351_G	0.549	0.36
301_H	342_Y	0.546	0.36
92_Y	137_Y	0.544	0.35
108_W	124_H	0.544	0.35
216_R	220_P	0.544	0.35
201_G	323_S	0.543	0.35
229_D	368_F	0.543	0.35
262_V	268_A	0.543	0.35
183_G	269_A	0.539	0.35
384_G	387_L	0.539	0.35
253_L	257_P	0.538	0.35
202_G	277_N	0.537	0.35
204_D	281_R	0.537	0.35
151_A	155_R	0.537	0.35
179_A	251_H	0.536	0.35
166_G	210_Y	0.536	0.35
85_L	93_R	0.534	0.34
120_L	144_D	0.530	0.34
135_A	281_R	0.530	0.34
112_A	122_G	0.529	0.34
321_L	326_G	0.529	0.34
281_R	408_W	0.528	0.34
101_W	105_A	0.528	0.34
128_A	135_A	0.528	0.34
274_F	300_V	0.528	0.34
109_Q	151_A	0.527	0.34
134_I	138_P	0.526	0.34
191_D	265_T	0.526	0.34
245_S	278_V	0.524	0.33
157_Y	160_A	0.523	0.33
136_A	140_L	0.523	0.33
356_T	410_E	0.521	0.33
193_P	263_D	0.520	0.33
205_A	230_M	0.518	0.33
298_P	367_P	0.517	0.33
310_Q	315_E	0.517	0.33
146_A	150_Q	0.516	0.33
240_K	243_Q	0.516	0.33
107_V	191_D	0.516	0.33
187_M	224_A	0.516	0.33
257_P	289_R	0.514	0.33
334_A	338_E	0.514	0.33
223_I	387_L	0.513	0.33
84_D	374_S	0.512	0.32
196_T	294_A	0.511	0.32
202_G	232_S	0.511	0.32
86_Y	90_I	0.510	0.32
195_P	224_A	0.509	0.32
214_Y	219_A	0.509	0.32
204_D	229_D	0.508	0.32
101_W	231_P	0.507	0.32
97_W	110_Q	0.507	0.32
87_D	96_N	0.507	0.32
223_I	404_E	0.506	0.32
189_K	224_A	0.506	0.32
253_L	357_P	0.505	0.32
203_L	297_G	0.504	0.32
211_Y	215_E	0.504	0.32
118_P	181_I	0.503	0.32
279_A	361_G	0.502	0.32
194_F	261_W	0.501	0.31
92_Y	98_I	0.501	0.31
132_Y	138_P	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4i4cA	1	0.9638	100	0.319	Contact Map
3fnbA	2	0.8357	100	0.526	Contact Map
2jbwA	2	0.8116	100	0.549	Contact Map
2z3zA	2	0.9251	100	0.549	Contact Map
1xfdA	2	0.9517	100	0.563	Contact Map
4q1vA	2	0.9275	100	0.567	Contact Map
4wjlA	2	0.9541	100	0.571	Contact Map
4a5sA	2	0.9541	100	0.585	Contact Map
2ecfA	2	0.9493	100	0.588	Contact Map
4bp8A	1	0.9734	100	0.592	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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