GREMLIN Database
MCP1 - Methyl-accepting chemotaxis protein I
UniProt: P02942 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11034
Length: 551 (504)
Sequences: 19952 (17239)
Seq/√Len: 767.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
245_G250_G4.8291.00
337_A340_G4.0751.00
231_H236_D3.8311.00
6_K9_T3.3601.00
240_P264_M2.9921.00
257_R260_Q2.8221.00
10_S247_N2.7651.00
326_A340_G2.6711.00
27_G31_N2.6091.00
326_A337_A2.4981.00
147_K150_E2.3861.00
231_H239_K2.3661.00
225_L253_A2.3521.00
216_A220_A2.3341.00
230_R251_Q2.3071.00
326_A330_A2.3071.00
194_W198_G2.3011.00
269_D507_R2.2991.00
357_S427_K2.2991.00
445_I456_M2.2981.00
442_M445_I2.2351.00
342_K346_N2.1621.00
335_E339_R2.1341.00
330_A340_G2.1131.00
229_I259_M2.1051.00
356_T359_Q2.1041.00
353_D427_K2.1021.00
226_I255_S2.1001.00
99_K103_K2.0911.00
230_R258_H2.0801.00
232_I259_M1.9931.00
362_A425_V1.9591.00
247_N250_G1.9591.00
318_Q321_E1.9561.00
215_K219_V1.9501.00
26_G200_M1.9401.00
240_P261_G1.9381.00
410_S414_A1.9211.00
500_A503_E1.9201.00
360_K363_D1.9171.00
230_R234_G1.9121.00
229_I256_L1.9091.00
226_I251_Q1.9051.00
141_Q145_A1.9051.00
232_I260_Q1.8781.00
366_S370_G1.8491.00
109_E126_K1.8471.00
357_S423_D1.8381.00
472_Q475_L1.8381.00
240_P257_R1.8131.00
405_N408_Q1.8081.00
172_E176_R1.8031.00
191_Q195_I1.7921.00
240_P260_Q1.7741.00
450_T454_D1.7621.00
138_E141_Q1.7521.00
198_G202_V1.7431.00
10_S217_S1.7341.00
355_S432_S1.7311.00
429_D433_T1.7231.00
170_Y174_N1.7191.00
251_Q254_E1.7171.00
363_D366_S1.7121.00
190_S194_W1.7091.00
225_L252_L1.7011.00
332_S335_E1.6981.00
452_V456_M1.6931.00
229_I255_S1.6771.00
451_R454_D1.6701.00
418_K422_E1.6681.00
440_E444_E1.6651.00
257_R261_G1.6561.00
197_V201_I1.6531.00
92_E96_I1.6451.00
433_T437_S1.6331.00
8_V12_L1.6191.00
349_Q353_D1.6091.00
358_S428_V1.5961.00
412_Q416_E1.5961.00
360_K416_E1.5821.00
229_I252_L1.5811.00
342_K345_D1.5771.00
479_E482_R1.5761.00
445_I452_V1.5731.00
88_A92_E1.5731.00
471_D475_L1.5661.00
106_A110_A1.5621.00
230_R255_S1.5511.00
123_A127_R1.5491.00
165_K169_A1.5331.00
503_E507_R1.5301.00
279_S283_E1.5291.00
440_E443_A1.5241.00
193_M197_V1.5071.00
154_Q158_G1.5051.00
438_A442_M1.4991.00
18_F207_I1.4921.00
290_D293_S1.4901.00
328_H332_S1.4831.00
349_Q352_R1.4821.00
26_G30_F1.4741.00
325_Q328_H1.4651.00
176_R180_I1.4591.00
401_G404_R1.4581.00
289_N293_S1.4551.00
507_R510_E1.4511.00
352_R436_E1.4501.00
383_A401_G1.4421.00
328_H331_L1.4311.00
102_E106_A1.4291.00
369_D418_K1.4261.00
331_L335_E1.4221.00
120_A124_E1.4141.00
346_N349_Q1.4121.00
61_L64_R1.4121.00
8_V216_A1.4101.00
300_A304_E1.4081.00
350_T431_G1.4051.00
68_N72_I1.4031.00
183_S187_A1.4001.00
243_V257_R1.4001.00
264_M268_G1.3981.00
225_L256_L1.3941.00
211_W215_K1.3931.00
294_R483_V1.3901.00
408_Q412_Q1.3881.00
236_D239_K1.3841.00
489_A493_E1.3841.00
57_W60_L1.3841.00
137_A141_Q1.3831.00
506_S510_E1.3791.00
356_T360_K1.3781.00
95_S99_K1.3701.00
367_V413_A1.3581.00
310_E314_A1.3531.00
304_E307_A1.3531.00
447_S451_R1.3531.00
493_E496_A1.3521.00
351_M431_G1.3501.00
326_A456_M1.3491.00
29_F196_L1.3481.00
483_V487_N1.3471.00
422_E426_G1.3471.00
190_S193_M1.3421.00
321_E325_Q1.3381.00
265_R269_D1.3351.00
354_I424_S1.3351.00
103_K107_D1.3301.00
262_E514_V1.3261.00
482_R486_Q1.3251.00
354_I431_G1.3241.00
343_V437_S1.3161.00
444_E447_S1.3141.00
228_S241_I1.3031.00
189_Y193_M1.2991.00
179_D183_S1.2981.00
83_S86_T1.2931.00
91_M95_S1.2931.00
67_L71_G1.2911.00
162_G165_K1.2901.00
415_R419_S1.2901.00
157_Q161_D1.2891.00
261_G265_R1.2851.00
327_S330_A1.2811.00
126_K130_D1.2721.00
383_A404_R1.2701.00
369_D414_A1.2691.00
30_F34_K1.2651.00
194_W197_V1.2601.00
353_D356_T1.2601.00
412_Q415_R1.2591.00
326_A333_A1.2551.00
352_R356_T1.2511.00
357_S360_K1.2501.00
72_I76_M1.2431.00
336_T340_G1.2411.00
464_D468_R1.2391.00
323_A326_A1.2381.00
300_A303_E1.2321.00
489_A492_E1.2321.00
106_A109_E1.2301.00
359_Q429_D1.2271.00
6_K251_Q1.2251.00
262_E265_R1.2231.00
37_K189_Y1.2171.00
286_T290_D1.2161.00
350_T430_V1.2161.00
272_N275_N1.2141.00
41_T45_T1.2091.00
345_D349_Q1.2071.00
224_R242_E1.2051.00
499_A503_E1.2041.00
269_D511_A1.2041.00
343_V348_V1.2021.00
433_T436_E1.1971.00
509_T513_A1.1961.00
24_T28_L1.1851.00
364_I420_L1.1821.00
324_R328_H1.1801.00
336_T444_E1.1781.00
511_A514_V1.1761.00
8_V215_K1.1751.00
141_Q144_G1.1751.00
100_Q103_K1.1741.00
174_N177_L1.1741.00
243_V253_A1.1711.00
311_Q314_A1.1711.00
317_K321_E1.1691.00
301_S479_E1.1641.00
140_I144_G1.1621.00
98_L102_E1.1591.00
283_E286_T1.1591.00
443_A447_S1.1581.00
19_G207_I1.1521.00
241_I257_R1.1501.00
227_D230_R1.1491.00
223_N251_Q1.1491.00
195_I198_G1.1401.00
138_E142_L1.1341.00
156_T160_Q1.1341.00
260_Q264_M1.1331.00
243_V247_N1.1331.00
282_S286_T1.1321.00
234_G258_H1.1321.00
482_R485_Q1.1311.00
270_V512_V1.1261.00
64_R68_N1.1251.00
135_A138_E1.1251.00
130_D134_N1.1151.00
330_A337_A1.1141.00
231_H234_G1.1131.00
223_N226_I1.1091.00
335_E338_Q1.1081.00
124_E128_N1.1071.00
96_I100_Q1.1061.00
271_R275_N1.1061.00
182_V186_N1.1021.00
293_S296_E1.1011.00
100_Q104_N1.1001.00
226_I252_L1.0991.00
416_E419_S1.0971.00
225_L229_I1.0961.00
293_S297_Q1.0951.00
208_F212_F1.0911.00
355_S429_D1.0891.00
288_N491_V1.0881.00
127_R131_I1.0871.00
7_I249_M1.0851.00
161_D165_K1.0851.00
272_N276_A1.0841.00
65_N68_N1.0841.00
415_R418_K1.0821.00
28_L32_A1.0811.00
297_Q300_A1.0811.00
426_G430_V1.0791.00
103_K106_A1.0791.00
465_E468_R1.0781.00
5_I9_T1.0761.00
231_H259_M1.0731.00
501_L515_F1.0721.00
73_R76_M1.0691.00
96_I99_K1.0671.00
12_L16_A1.0621.00
309_M312_L1.0621.00
65_N69_R1.0611.00
473_V477_V1.0601.00
330_A333_A1.0561.00
253_A257_R1.0561.00
468_R472_Q1.0551.00
92_E95_S1.0551.00
31_N35_N1.0511.00
115_P118_S1.0511.00
212_F216_A1.0491.00
423_D427_K1.0441.00
258_H262_E1.0401.00
222_M252_L1.0391.00
333_A340_G1.0381.00
321_E324_R1.0381.00
360_K423_D1.0381.00
21_L203_V1.0361.00
298_Q308_S1.0271.00
281_A498_A1.0251.00
343_V346_N1.0251.00
101_A104_N1.0151.00
492_E496_A1.0121.00
149_N153_D1.0111.00
461_S465_E1.0101.00
334_S337_A1.0101.00
336_T339_R1.0101.00
508_L515_F1.0071.00
85_S88_A1.0061.00
226_I230_R1.0021.00
478_A482_R1.0011.00
314_A318_Q0.9991.00
419_S423_D0.9971.00
107_D110_A0.9951.00
503_E506_S0.9951.00
341_G348_V0.9941.00
155_P158_G0.9931.00
355_S359_Q0.9921.00
286_T289_N0.9911.00
181_A184_D0.9841.00
166_Q169_A0.9831.00
236_D516_R0.9831.00
319_N463_S0.9811.00
224_R227_D0.9671.00
258_H261_G0.9661.00
64_R67_L0.9651.00
486_Q489_A0.9641.00
275_N509_T0.9611.00
485_Q489_A0.9611.00
475_L479_E0.9591.00
228_S256_L0.9591.00
15_L211_W0.9591.00
334_S338_Q0.9561.00
241_I253_A0.9551.00
22_Q25_S0.9541.00
409_R416_E0.9521.00
60_L64_R0.9481.00
124_E127_R0.9471.00
25_S29_F0.9431.00
276_A500_A0.9421.00
461_S464_D0.9361.00
219_V223_N0.9351.00
369_D373_F0.9351.00
209_A213_G0.9331.00
310_E474_G0.9231.00
217_S221_P0.9231.00
129_Y133_H0.9231.00
142_L147_K0.9221.00
97_S100_Q0.9191.00
58_V62_Q0.9151.00
148_I152_F0.9131.00
175_D179_D0.9111.00
134_N138_E0.9091.00
187_A191_Q0.9091.00
346_N437_S0.9091.00
428_V431_G0.9071.00
180_I184_D0.9061.00
170_Y176_R0.9041.00
447_S450_T0.9041.00
469_G473_V0.9041.00
256_L259_M0.9041.00
364_I421_I0.9031.00
298_Q312_L0.9011.00
339_R342_K0.9001.00
93_S96_I0.8971.00
15_L18_F0.8931.00
254_E257_R0.8931.00
68_N71_G0.8911.00
221_P245_G0.8901.00
279_S282_S0.8881.00
430_V433_T0.8881.00
143_L146_G0.8881.00
94_A98_L0.8881.00
46_I50_Q0.8871.00
438_A445_I0.8791.00
201_I205_A0.8781.00
224_R228_S0.8771.00
506_S509_T0.8761.00
32_A35_N0.8741.00
232_I256_L0.8741.00
438_A441_T0.8721.00
327_S331_L0.8711.00
142_L145_A0.8701.00
270_V508_L0.8701.00
510_E513_A0.8701.00
246_S250_G0.8681.00
439_G442_M0.8681.00
370_G409_R0.8671.00
223_N248_E0.8661.00
442_M456_M0.8651.00
242_E257_R0.8631.00
171_M174_N0.8611.00
62_Q65_N0.8601.00
138_E155_P0.8591.00
222_M249_M0.8571.00
223_N227_D0.8571.00
370_G373_F0.8561.00
221_P249_M0.8561.00
174_N181_A0.8561.00
228_S239_K0.8561.00
380_L388_R0.8541.00
186_N190_S0.8511.00
350_T434_L0.8491.00
149_N152_F0.8491.00
157_Q160_Q0.8491.00
510_E514_V0.8461.00
275_N279_S0.8431.00
409_R412_Q0.8431.00
249_M253_A0.8401.00
63_T66_T0.8391.00
220_A224_R0.8391.00
496_A500_A0.8371.00
329_L333_A0.8371.00
296_E300_A0.8371.00
347_V435_V0.8361.00
176_R181_A0.8361.00
358_S424_S0.8351.00
441_T445_I0.8331.00
165_K168_V0.8321.00
235_G259_M0.8311.00
243_V254_E0.8281.00
411_A415_R0.8271.00
229_I232_I0.8271.00
317_K471_D0.8271.00
69_R73_R0.8251.00
104_N107_D0.8231.00
89_E93_S0.8231.00
454_D457_G0.8201.00
237_L263_L0.8191.00
86_T89_E0.8171.00
401_G405_N0.8131.00
227_D231_H0.8121.00
91_M144_G0.8091.00
496_A499_A0.8091.00
312_L319_N0.8091.00
218_L221_P0.8081.00
123_A126_K0.8071.00
14_V18_F0.8071.00
344_V348_V0.8051.00
14_V21_L0.8041.00
267_V517_I0.8031.00
312_L323_A0.8011.00
150_E153_D0.7981.00
307_A311_Q0.7951.00
7_I222_M0.7931.00
338_Q450_T0.7921.00
168_V172_E0.7901.00
278_Y282_S0.7901.00
29_F33_L0.7871.00
105_W109_E0.7871.00
326_A336_T0.7871.00
488_A491_V0.7811.00
475_L478_A0.7801.00
256_L260_Q0.7791.00
326_A334_S0.7791.00
505_A515_F0.7791.00
363_D367_V0.7771.00
221_P248_E0.7771.00
8_V219_V0.7771.00
44_Q47_R0.7761.00
468_R471_D0.7751.00
340_G445_I0.7731.00
277_I501_L0.7731.00
238_V516_R0.7721.00
419_S422_E0.7721.00
472_Q476_A0.7721.00
351_M435_V0.7711.00
341_G345_D0.7701.00
143_L147_K0.7701.00
5_I13_L0.7691.00
33_L37_K0.7691.00
58_V61_L0.7661.00
426_G429_D0.7641.00
34_K193_M0.7641.00
99_K102_E0.7581.00
213_G216_A0.7541.00
134_N137_A0.7521.00
487_N491_V0.7521.00
30_F193_M0.7511.00
220_A223_N0.7511.00
93_S97_S0.7491.00
74_Y143_L0.7481.00
307_A310_E0.7481.00
160_Q163_F0.7471.00
338_Q342_K0.7471.00
277_I504_Q0.7441.00
337_A446_V0.7441.00
458_E461_S0.7431.00
360_K420_L0.7391.00
297_Q301_S0.7391.00
365_I369_D0.7381.00
431_G435_V0.7361.00
324_R464_D0.7331.00
303_E307_A0.7331.00
348_V352_R0.7321.00
465_E469_G0.7321.00
133_H137_A0.7301.00
128_N131_I0.7301.00
90_L93_S0.7281.00
282_S502_E0.7261.00
40_F44_Q0.7261.00
114_D117_Q0.7251.00
373_F384_V0.7241.00
471_D474_G0.7241.00
238_V517_I0.7221.00
56_S59_A0.7191.00
173_Q176_R0.7181.00
351_M355_S0.7171.00
59_A62_Q0.7161.00
301_S304_E0.7151.00
61_L65_N0.7141.00
259_M263_L0.7141.00
67_L70_A0.7131.00
228_S231_H0.7131.00
84_G87_V0.7121.00
7_I248_E0.7101.00
37_K40_F0.7101.00
195_I199_V0.7091.00
320_A323_A0.7071.00
268_G272_N0.7051.00
278_Y509_T0.7031.00
457_G461_S0.7021.00
42_V46_I0.7011.00
38_E41_T0.7001.00
127_R130_D0.6991.00
40_F43_L0.6981.00
354_I364_I0.6971.00
245_G249_M0.6961.00
102_E133_H0.6931.00
71_G74_Y0.6921.00
302_L305_T0.6901.00
298_Q305_T0.6891.00
207_I211_W0.6871.00
121_A124_E0.6861.00
32_A192_A0.6861.00
410_S420_L0.6861.00
269_D272_N0.6861.00
316_V319_N0.6861.00
454_D458_E0.6851.00
369_D415_R0.6851.00
470_I474_G0.6841.00
494_S497_A0.6821.00
312_L470_I0.6811.00
439_G443_A0.6811.00
177_L180_I0.6811.00
358_S364_I0.6801.00
205_A209_A0.6781.00
136_L140_I0.6771.00
341_G347_V0.6771.00
29_F32_A0.6771.00
376_N404_R0.6741.00
89_E92_E0.6741.00
136_L139_L0.6741.00
425_V429_D0.6741.00
42_V45_T0.6731.00
308_S311_Q0.6731.00
215_K218_L0.6721.00
33_L36_D0.6721.00
66_T69_R0.6711.00
353_D430_V0.6711.00
268_G517_I0.6701.00
114_D118_S0.6701.00
392_Q403_V0.6691.00
139_L143_L0.6681.00
306_A309_M0.6671.00
169_A172_E0.6661.00
288_N498_A0.6631.00
120_A123_A0.6631.00
170_Y173_Q0.6631.00
364_I413_A0.6601.00
407_A410_S0.6601.00
108_Y111_L0.6591.00
160_Q164_E0.6581.00
290_D294_R0.6571.00
428_V432_S0.6571.00
9_T12_L0.6561.00
301_S308_S0.6561.00
155_P159_Y0.6531.00
91_M98_L0.6521.00
184_D188_S0.6521.00
128_N166_Q0.6511.00
101_A105_W0.6511.00
365_I418_K0.6451.00
44_Q50_Q0.6451.00
87_V91_M0.6441.00
34_K37_K0.6421.00
191_Q194_W0.6401.00
364_I367_V0.6391.00
284_I288_N0.6371.00
37_K45_T0.6371.00
163_F167_Y0.6361.00
107_D111_L0.6361.00
28_L31_N0.6361.00
268_G271_R0.6341.00
69_R72_I0.6321.00
481_D485_Q0.6321.00
359_Q363_D0.6301.00
298_Q301_S0.6301.00
108_Y112_P0.6291.00
67_L72_I0.6281.00
24_T27_G0.6281.00
36_D40_F0.6271.00
178_H181_A0.6271.00
23_L27_G0.6261.00
344_V347_V0.6241.00
501_L505_A0.6241.00
291_L491_V0.6221.00
232_I263_L0.6221.00
363_D416_E0.6211.00
39_N42_V0.6211.00
291_L295_T0.6201.00
159_Y162_G0.6201.00
502_E506_S0.6201.00
364_I410_S0.6181.00
154_Q157_Q0.6171.00
330_A336_T0.6171.00
88_A91_M0.6161.00
144_G147_K0.6151.00
290_D486_Q0.6141.00
379_A404_R0.6141.00
449_V456_M0.6141.00
304_E472_Q0.6131.00
34_K38_E0.6121.00
228_S232_I0.6121.00
463_S466_Q0.6111.00
301_S476_A0.6111.00
346_N350_T0.6101.00
512_V515_F0.6081.00
19_G211_W0.6081.00
113_R117_Q0.6081.00
109_E112_P0.6071.00
35_N39_N0.6071.00
158_G162_G0.6061.00
64_R71_G0.6061.00
188_S192_A0.6061.00
62_Q66_T0.6051.00
354_I428_V0.6051.00
176_R179_D0.6041.00
466_Q473_V0.6041.00
163_F166_Q0.6031.00
30_F189_Y0.6021.00
332_S336_T0.6011.00
129_Y163_F0.6011.00
474_G478_A0.6011.00
162_G166_Q0.5991.00
44_Q49_Q0.5971.00
308_S312_L0.5971.00
105_W108_Y0.5951.00
343_V350_T0.5951.00
348_V439_G0.5941.00
460_A463_S0.5931.00
351_M432_S0.5921.00
504_Q507_R0.5911.00
33_L192_A0.5911.00
315_T318_Q0.5891.00
22_Q29_F0.5891.00
499_A502_E0.5881.00
239_K260_Q0.5871.00
71_G75_M0.5871.00
161_D164_E0.5871.00
31_N34_K0.5841.00
274_A278_Y0.5811.00
87_V90_L0.5811.00
132_Y136_L0.5811.00
233_A255_S0.5801.00
237_L267_V0.5801.00
271_R517_I0.5801.00
133_H136_L0.5791.00
243_V250_G0.5781.00
219_V249_M0.5781.00
234_G262_E0.5771.00
489_A496_A0.5751.00
7_I218_L0.5751.00
67_L74_Y0.5741.00
314_A317_K0.5741.00
302_L480_M0.5731.00
313_T316_V0.5731.00
233_A258_H0.5721.00
74_Y91_M0.5711.00
352_R355_S0.5701.00
259_M262_E0.5681.00
327_S340_G0.5681.00
46_I49_Q0.5661.00
11_L15_L0.5651.00
507_R511_A0.5641.00
248_E251_Q0.5641.00
156_T164_E0.5621.00
217_S220_A0.5591.00
326_A329_L0.5591.00
23_L26_G0.5591.00
466_Q469_G0.5581.00
146_G151_F0.5571.00
142_L146_G0.5561.00
22_Q26_G0.5561.00
283_E493_E0.5561.00
404_R408_Q0.5551.00
109_E113_R0.5551.00
170_Y175_D0.5551.00
271_R513_A0.5541.00
12_L215_K0.5531.00
344_V435_V0.5531.00
171_M175_D0.5531.00
60_L68_N0.5521.00
61_L74_Y0.5481.00
373_F411_A0.5471.00
183_S186_N0.5471.00
252_L256_L0.5461.00
158_G161_D0.5451.00
423_D426_G0.5451.00
132_Y135_A0.5441.00
174_N180_I0.5441.00
298_Q316_V0.5431.00
320_A460_A0.5431.00
339_R444_E0.5431.00
142_L150_E0.5421.00
266_T269_D0.5411.00
131_I134_N0.5401.00
469_G477_V0.5401.00
366_S369_D0.5391.00
374_Q402_E0.5381.00
456_M459_I0.5381.00
287_G490_L0.5371.00
66_T70_A0.5361.00
177_L181_A0.5361.00
144_G148_I0.5331.00
60_L63_T0.5321.00
221_P247_N0.5321.00
312_L316_V0.5321.00
185_N189_Y0.5311.00
442_M455_I0.5311.00
364_I414_A0.5311.00
298_Q309_M0.5301.00
83_S87_V0.5301.00
85_S89_E0.5291.00
139_L146_G0.5281.00
198_G201_I0.5271.00
422_E425_V0.5271.00
343_V347_V0.5261.00
235_G252_L0.5241.00
334_S340_G0.5231.00
221_P225_L0.5221.00
9_T13_L0.5211.00
186_N189_Y0.5211.00
347_V350_T0.5211.00
456_M460_A0.5211.00
90_L94_A0.5201.00
226_I249_M0.5191.00
446_V450_T0.5191.00
38_E42_V0.5181.00
377_I384_V0.5171.00
294_R298_Q0.5171.00
309_M315_T0.5171.00
365_I414_A0.5161.00
373_F377_I0.5151.00
276_A279_S0.5151.00
241_I259_M0.5151.00
353_D357_S0.5141.00
264_M517_I0.5131.00
273_G277_I0.5131.00
235_G266_T0.5121.00
57_W61_L0.5121.00
273_G276_A0.5111.00
184_D187_A0.5111.00
451_R455_I0.5101.00
431_G434_L0.5101.00
361_I421_I0.5101.00
453_T456_M0.5101.00
125_I129_Y0.5061.00
118_S123_A0.5061.00
57_W64_R0.5051.00
169_A173_Q0.5031.00
303_E481_D0.5011.00
424_S428_V0.5001.00
156_T161_D0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zx6A 2 0.5499 100 0.362 Contact Map
1qu7A 2 0.412 100 0.518 Contact Map
2ch7A 2 0.51 100 0.555 Contact Map
3g67A 2 0.3866 100 0.603 Contact Map
4i3mA 2 0.2668 99.9 0.751 Contact Map
4cq4A 4 0.1561 99.5 0.841 Contact Map
2f95B 2 0.0926 99.4 0.854 Contact Map
4gycB 2 0.1089 99.2 0.863 Contact Map
3zccA 2 0.1978 98.8 0.882 Contact Map
4i5sA 2 0.5626 98.4 0.898 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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